RNA id: TU2039001


Basic Information

Item Value
RNA id TU2039001
length 1110
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110501455
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15016155 ~ 15043883 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGACAACAACAGAGATGCAACAGTGTACAGAAATGGCGGTTTGGGACAGCCCTACTGAAAAGCTGCAGATGGAAGATTGAGATGGAGCGTGCCCACAGGTCTGGAAAACATGTAACCTGCCTAGGTGACAGTTCCTGGTCAAGTTCTAGAGGTTTAAGGACAAGATGGCTGTTCTGGagagagccaagaacttgagaggaatgaacatcttcctcaacgaggactTCACAGAAGCTGTCGGCCAGAGGCGGAAAGAACTTATCCCAGCTATGAAAACTGCCAGAGAGCATGGGAGCATTGCTTACATCCACtacgacaggctcattgtccaccctccctcccaaaagCCTTGTGAGGAATGAGATAGCCATGCCTCAGGGTCAGTAGCTTCAGCACAACATCACATGCACATATATTGATTGATTTTGTTAAGAGGTCTATTTTCTGGGTGACCTGACGATTGACTAGTTAGCAACTAGCTCTCCATTCTGACTAATGCCTGTAATATGATCCAGGTTCACTCAGCCAACTAGAGTGCATACCAATAGTGTTGGTTCTGTTACATCTACTTGTATTGATCATATCTTCACTAATACTGCAAAGCTTTGCTCCAAAGCAATACCAGCTTCCATTGGCTGTAGTGATTATAACATTGTGGCATTAACAAGGAAAGTGTAAGTGCCAAAGGTTGGGCCTAAAGTAATTCATAAGAGGTCATACAAAATGTTTCCTCGATTATTTTGTTGAAAATGTATGTTGGTCTGATGTTTATGAGGAAGTGAATTCAGGTGCAACACTGGAAGTATTTGTAAAAAATGTCATGCCAACTGTTGACAATATACCCCATGATTGATGATGGTTCAAAGAAAGAAATGATGCAAAAGTTGTCTGCTCAGCTGATTAGTTGGCATACTCTAAATTGAGAAATGTTGTGACTAAACTTAACAAGAATAAAATATATTACCAAACAAAGATAAATACTTTGGAGTACCATTTATAATAAAACCTTTAGTTATTGCCAGTCATTTCAATGACTATTTCATTAGTGAAGTGGAAAAACTGAAATGAAAACATTGAACAGTGAACCATCATATTTTTTAATAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039003 lncRNA downstream 16389 15016155 ~ 15021609 (-) False LOC110501455
TU2038371 lncRNA downstream 97942 14939854 ~ 14940056 (-) True G1780264
TU2038348 lncRNA downstream 136458 14901334 ~ 14901540 (-) True G1780243
TU2038347 lncRNA downstream 139863 14897907 ~ 14898135 (-) True G1780242
TU2038145 lncRNA downstream 505950 14531052 ~ 14532048 (-) True G1780050
TU2039105 lncRNA upstream 112217 15155873 ~ 15156151 (-) True G1780892
TU2039064 lncRNA upstream 118304 15161960 ~ 15163276 (-) True G1780855
TU2039120 lncRNA upstream 150370 15194026 ~ 15194281 (-) True G1780907
TU2039143 lncRNA upstream 168972 15212628 ~ 15212880 (-) True LOC118936393
TU2039148 lncRNA upstream 172978 15216634 ~ 15216871 (-) True G1780926
XM_021579030.2 mRNA downstream 57253 14975338 ~ 14980745 (-) True LOC110501454
XM_036958816.1 mRNA downstream 103674 14903644 ~ 14934324 (-) False LOC110501452
XM_036958823.1 mRNA upstream 22089 15065745 ~ 15087917 (-) False LOC110501457
XM_021579035.2 mRNA upstream 22089 15065745 ~ 15088311 (-) False LOC110501457
XM_021579032.2 mRNA upstream 22089 15065745 ~ 15088313 (-) False LOC110501457
XM_021579034.2 mRNA upstream 22089 15065745 ~ 15088358 (-) False LOC110501457
XM_021579037.2 mRNA upstream 22089 15065745 ~ 15088358 (-) False LOC110501457
TU2036210 other downstream 1707503 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1865019 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 523847 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 642200 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 2013466 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 2013466 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2825873 17869529 ~ 17903951 (-) False G1783895

Expression Profile