RNA id: XM_021579049.2


Basic Information

Item Value
RNA id XM_021579049.2
length 3501
RNA type mRNA
GC content 0.46
exon number 17
gene id LOC110501463
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15165903 ~ 15187152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctaagtcAGGCCCTGACCAGAGAGGAACAATGCAaacgcagtggaactggcttttaagtagagttgagtttgagggctatAGAGGAACAGATGAACCCTTGCATACTGAGATTTGAACAAAACGTCATAATCCTAACGTTTCGGTCATTTagaagacgctcttatccagagagacaaTTAGGGTTCAattccttgctcaagggcatatcaacagatttttcacttagtcGGCTCGGGATTTCGAACCAGCGACCtgtcagttactggcccaacgctcgtAACCGCTAGGCTCCCTGATCTGTTACAGAAGAAAATCAACAATAACCTAGAAGGAGATGGGTATTTTGATTATGGTTACCTACTATTCGGATTTCTCAAGAACAAGGCAACgacaccccacccccctccccctccatcccttaTGGGCGTAATGTGTTGCTCTGCTCATAGGATCAAACTTCCCAAGTCCATGTTCGTGACCAGGATTCCAAATCGAGGTATATGGCTTCAAAGCCAATCAAGCACTTCCCAAAAGTCACGTTATAGCTGAAAGCGACACGATTCAGTGTAAATGTGCAGACAAAGCGGATCTGTTCGATATTGGGTGGAAATATGCAGCACCAGAGGAGGTATTGGTGTGACTCGTGCGTGCGTAGTAACGAATAAATAGGCACTGCACGCTCTAAATATCAGCAAATCAAACGTACTTCGCCAAAAAGGTCACCGTGGATGGGATTTTGTTGACAATAGATATTCAAAACCCTGTGTTTCTTAGTGTCAAAAGCGCACCAGACGTTGCGTTGCCAAAGGACTTTATTTGATCGTCCTCGCATAGTTTCTTTTTTGGACTCTACTTGGGTCACCTGTACCCATCCTCAGCACGGAGTGATGGCGGCGTCTGCACCTTCCTCCTCTGGCGGGGAACCGGATCCCAACTCGACAAATTTACGACCACCAGGCACAAGCTATGACGCTTGGTGTGGAGTTGCTCATGGATGCACTAGAAAATTGGGAATGAAGATATGTGGATTTTTGCAGAAGAACAATAACCTCGAGGAGAAAATTAGTTCCTTCAAGGAAAGATCGTCTAAGGACCTGCTTGATAACAGCGACAGGGATTCCCGTTTCAGACGCACGGAGACGGACTTTTCCAATCTGTTTGCTAGAGATTTATTACCAGCCAAAAATGGAGAGGAGCCAACCATGCAGTTCTTGTTGGAGGTGGTGGATATTCTCACAAACTACGTCCGGAAGACCTTCGACAGATCCACCAAGGTCCTGGACTTCCACCACCCCCACCAGCTGCTGGAGGGCATGGAGGGCTTCAACCTGGAGCTGTCCGACCAGCCTGAGTCTCTGGAGCAGATCCTGGTGGACTGCAGGGATACCCTGAAATATGGAGTGAGAACAGGTCACCCCAGGTTTTTCAACCAGCTATCCACTGGTTTAGACATCATTGGGTTGGCAGGAGAATGGCTCACCTCCACTGCAAACACTAACATGTTCACCTATGAGATCGCTCCAGTCTTTGTGCTCATGGAACAGCTGACGCTGAAGAAGATGAGGGAGATCATTGGCTGGCCTGACGGAGAAGGCGATGGGATATTCTCACCAGGTGGAGCGATTTCCAATATGTACAGTGTGATGACCGCCCGCTACAAGTTCTTCCCTGAAGTCAAGACCAAAGGCATGACTGCTGCCCCCAGATTGGTGCTCTTCACCTCGGAGCACAGTCACTACTCTATAAAGAAAGCCAGTGCTGCTTTGGGCTTTGGAACAGAAAACCTGATCCTGTTGAGCACAGATGAGAGAGGGAGAGTCATTCCTGCTGATTTGGAAGCCAAGGTCATCGACGCCAAGGCGCGGGGTTGTGTCCCAATGTTCGTGAATGCTACAGCTGGTTCCACAGTGTATGGAGCGTTCGACCCCATCCATGAGATTGCCGACATCTGCGAGAAATACAACATGTGGCTACATGTTGACGGTGCATGGGGAGGAGGCCTACTGATGTCCAGGAAGCACAGGCACAAGCTGCGTGGCGTGGAGCGGGCCAACTCAGTCACCTGGAACCCTCACAAGATGATGGGTGTGCCACTGCAGTGCTCTGCCATTCTGGTCAGAGAGAGGGGAGTTTTATCAGGCTGCAACTCAATGTGTGCTGGCTACCTCTTCCAACCTGACAAACAGTACGATGTATCGTACGACACGGGGGATAAGGCCATCCAGTGTGGACGACACGTAGATATCTTCAAATTCTGGCTCATGTGGAAAGCAAAGGGAACAATAGGGTTTGAACACCACATCGACAAGTGCTTGGACCTCTCGCATTATCTCTATACTAAAATCAGGGACCGTGAGGGCTATCAGATGGTGTTCGAGGGAGAGCCCCAGCACACGAATGTCTGCTTCTGGTACCTTCCGCCAGGCATTCGTGACATGCCCGATGGTCAAGAGAGGCGGGACAGGTTGCATAAGGTGGCCCCCAAGATCAAGGCGTTGATGATGGAGTCTGGAACTACCATGGTGGGCTACCAGCCTCAGGGAGACAAGGTCAACTTCTTCCGCATGGTCATCTCCAATCCTGCCGCCACCAGGTCAGATATCGACTTCTTGACCGATGAGATTGAGAGACTGGGGCATGACTTGTAAGGGCCACGCTCAGTAGGAGGATGTTGCCCTTTGACCTTTCGGTCTCAGCTTTGTCATGTCCAGCTCGAAAAAGACCCTGAACTACAGCAAGCTTCATATTCCTGTTGTCTCTTGACCAATCATGTAGGACTTTGAAACTTCAGCTGCTTGTAGGACCTTTTTAGGTAAGCTGTGATCtcatgtgtttcctgtctgttctgtcttttAGCAGTGACTATGCCATAGTTAAATCTAACAATAACTGTTGTACAGTAGAGCCTACATAAGAGAATACATATTCAAATCCTGAGTGACCTTGAGAGATCTTTTTCAGTAAGAGACAGAGCACAATGCAAAGGACCTCATGGCATGGATGTGCACAGTATTGtaagttactgtatatatacagtatacctagatatatacagtatattataatgtACTGACTATTGGTGCTGTGTGTTGTCCATGTAATTATTAGGCCAGATGCACTATATGAAACACTACATTATATCCTGGCTGCTCTTCCCCTTCCATATTAAGAAGAGGGAATATAACACAGTCATTGTAACAGGTACTGTATTCTGTTGCTGCGTTTGAGATAATGCATTTTGGGGAGATTGTGTATAGTATGGTTACATTGCTTTTGTGGAAAATATATATGTCCTAGTTTTTCAGTAACACACGTTCCAATTATTATAAAAACACTAAATATACATAATTTAATAGACAAATCACTATTTATATCCAGACAGTATGTGTGTGAAATAGTTACCGATTTCCATTTGTAATGTGTCCTTACTTGTATTTTGAAACAGTACTGTATATTACCCGAATGTTTTGAATAATGAGATTAAAGGTATTTTAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039064 lncRNA downstream 2627 15161960 ~ 15163276 (-) True G1780855
TU2039105 lncRNA downstream 9752 15155873 ~ 15156151 (-) True G1780892
TU2039001 lncRNA downstream 122247 15037998 ~ 15043656 (-) False LOC110501455
TU2039002 lncRNA downstream 122247 15037998 ~ 15043656 (-) True LOC110501455
TU2039003 lncRNA downstream 144294 15016155 ~ 15021609 (-) False LOC110501455
TU2039120 lncRNA upstream 6874 15194026 ~ 15194281 (-) True G1780907
TU2039143 lncRNA upstream 25476 15212628 ~ 15212880 (-) True LOC118936393
TU2039148 lncRNA upstream 29482 15216634 ~ 15216871 (-) True G1780926
TU2039153 lncRNA upstream 32533 15219685 ~ 15220181 (-) True G1780931
TU2039166 lncRNA upstream 51414 15238566 ~ 15238822 (-) True LOC110502051
XM_021579047.2 mRNA downstream 12989 15148842 ~ 15152914 (-) True LOC110501462
XM_021579039.2 mRNA downstream 66213 15096036 ~ 15099690 (-) True LOC110501459
XM_021579040.2 mRNA downstream 66287 15096036 ~ 15099616 (-) False LOC110501459
XM_021579033.2 mRNA downstream 77516 15065745 ~ 15088387 (-) False LOC110501457
XM_021579036.2 mRNA downstream 77516 15065745 ~ 15088387 (-) True LOC110501457
XM_021579051.2 mRNA upstream 13220 15200372 ~ 15202635 (-) True LOC110501465
XR_005038963.1 mRNA upstream 24324 15211476 ~ 15214654 (-) False LOC118936393
LOC110502051 mRNA upstream 44675 15231827 ~ 15310852 (-) False LOC110502051
XM_021579052.2 mRNA upstream 127007 15314159 ~ 15354447 (-) False LOC110501466
XM_021579053.2 mRNA upstream 127007 15314159 ~ 15354447 (-) False LOC110501466
TU2036210 other downstream 1835408 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 1992924 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 380351 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 498704 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1869970 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1869970 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2682377 17869529 ~ 17903951 (-) False G1783895

Expression Profile