RNA id: XR_005038963.1


Basic Information

Item Value
RNA id XR_005038963.1
length 2401
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118936393
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15211476 ~ 15214654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcggggattcaatcttgcaacatttcggttactagtccaactctctaactgctaggctacctgccacccagtgCAATTTGAATGCATCTCATTGTGTAGTGGTTATCCATTGGGGCTGTTACAGCACTGCGTATCAGTGTGGaattttgttttggttgttgttgttgttgtaagaggATCCCACTGGGTGCCatgtctctgtgctgtgtctgGGTGATTTGTCTCTGTTGCAGGTCCAGTGCTCAAGCTGCAGCAGCGAACCCCTCGCCGGCGGGGCCAGCAAACTGCTGAACAGCCCTGAAGACAGTCTCTATTACAACCAGCTAAATAGAAATCTGGATTACCAAGGGAGCAAGAGGAAGCTGAGAACTTGGCTAAATCCAAGTGCTGGACAGAGTACTACAAATTACTGTCACCGGTGGAGTCAATCCCCGAGGAAGGCTACTCCACTGGGGCCCCTCCCACCCTGTCAAGAGGGCCACTCTTCAGTCAGAACTGAGCTACAACCCCTGTCAACTAGTAAGAGTCAAAGAGCACTAGCCAGACACACACTGAAAGAACATTTCCTCCATATGCACCATGTATTACAAGTACCAGTGATGTACAACAAGAGACCAAAGCAAattatttttaattattattattatttatttattttaattatttttaagAATGACTAATGATGCTCCCCATGTACAGGTATGTGTGTATCTGGCTGATCATGAACTTTTCTCATGAATATAGTTCCGCTGCCATGTTGTACATCAGCAGTTCCTTGTACATTGACACCTCCCCCACACACCTCTCAATTTAGTCAGATAGGCTCCAGTAATGGAGGGATTAGTTATGGTGTCGTTCATTCCTCTTCTGGCTTGTTTTGAACAAATCTGGTTCACACAagagactcatgttaaaagaaaTATCATGACAAATCATGACAAAATGGTACAGATGTTGCATCCATACATTAAAAGTCAACGACAAATGCACGTTTGTGGGGAGAAAATGACAGCTGTTTAGCGGAAGAGGAAAAGACCAATGAAATCATATATTTTTCTTCTATGAAGTTTCATTGTCAGGGAATATTGTACAATAGACCCTGACTAAGACTCCCCTAACAGCAAGCTTGAGCCAAAGTAGATACTGTAGGAAAACAGCTCTatttagagaggaggggtggaaatcAGTCATGGAACCAGACTCTGAGAACTAGACATTTGCCCATCATCCTCAGTCTGTGCAGACCAGGGCTAGCATTCGAAAGGAGTAATAGTGTCATGATCGGTGTATCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTATCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTCTGTTCACTGTGGTACACTAAATTAAGTGTAGCAATTCTGTTGTCAAGTCCTCTCCCTGAAAAGCTGTATTGAGAACATAGAGGTATACTGCAATGTGAATAGTCAATGTTGTTATTTAACCCTTTGCGgttaattattcaacccctttcagTGAATTATTCAATAATGATTgtaatatgtttttttatttttatcattatACCCAGAGTGATCTATAGATGCTGTGTACTAGAATCTCCAAAAATTGTCTTTCACTGAAACAGAGCTAGTCGTAACTCTGAATTTCCCCCAAAGTATAAGAATTTCCTTTTAAGATGTGTCGGAAATGCGGGGCTGGCAAGTTGATTTGTAGTGGGGGGTAATTTGCATATCATTTACTGCATCTCCTTTTGTTGACACCCCAGGGCCCAAGCCAAGATTTTGATCTTAATAGGAAGAGTAGGGGGGtatgactagttaaataaaggttaaataaataaaataaataaaaatgactgAAGATCCCTTCCTCCTTATTCTTACTCAGTGAGAAACACATTAGAGCTCTGCCGAGATAGCAGGACCAGCCACAGTCAGTCCaggttctactctactctaattcCTTTGGGTTTTCAGAAGCCCTAGTTGGCCATCAGAGAGCAAGACTACTTACAATACGCGTCAGGACTAGGTCGAGTTGCATTCAGGTTTTGTGGGACTTTAAAGCTAACATGTTGTCTGGCTTTTTCACATTGTGAGACATACTGTACTAATATGTACTAATAATGTTATTCATACCTGCGTACAttttatttgccatatcttcaatctaagcctactagaaagtctGTGCCCTCATGCCTGGAGGGAAGCTAGAAGTAattctgctacccaagaatagtaaagccccctttactagTTCAATTAGCCGAGCAATCAGCCTGATACCAACCCTtcgtaaacttttggaaaaaattgtgtttgactagatacaatgctattttact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039120 lncRNA downstream 17195 15194026 ~ 15194281 (-) True G1780907
TU2039064 lncRNA downstream 48200 15161960 ~ 15163276 (-) True G1780855
TU2039105 lncRNA downstream 55325 15155873 ~ 15156151 (-) True G1780892
TU2039001 lncRNA downstream 167820 15037998 ~ 15043656 (-) False LOC110501455
TU2039148 lncRNA upstream 1980 15216634 ~ 15216871 (-) True G1780926
TU2039153 lncRNA upstream 5031 15219685 ~ 15220181 (-) True G1780931
TU2039166 lncRNA upstream 23912 15238566 ~ 15238822 (-) True LOC110502051
TU2039169 lncRNA upstream 28860 15243514 ~ 15243823 (-) True G1780947
TU2039170 lncRNA upstream 29223 15243877 ~ 15244111 (-) True G1780948
XM_021579051.2 mRNA downstream 8841 15200372 ~ 15202635 (-) True LOC110501465
XM_021579049.2 mRNA downstream 24324 15165903 ~ 15187152 (-) False LOC110501463
XM_021579050.2 mRNA downstream 24324 15165903 ~ 15187152 (-) True LOC110501463
XM_021579047.2 mRNA downstream 58562 15148842 ~ 15152914 (-) True LOC110501462
XM_021579039.2 mRNA downstream 111786 15096036 ~ 15099690 (-) True LOC110501459
LOC110502051 mRNA upstream 17173 15231827 ~ 15310852 (-) False LOC110502051
XM_021579052.2 mRNA upstream 99505 15314159 ~ 15354447 (-) False LOC110501466
XM_021579053.2 mRNA upstream 99505 15314159 ~ 15354447 (-) False LOC110501466
XM_021579055.2 mRNA upstream 99505 15314159 ~ 15354447 (-) False LOC110501466
XM_021579056.2 mRNA upstream 99505 15314159 ~ 15354447 (-) True LOC110501466
TU2036210 other downstream 1880981 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2038497 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 352849 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 471202 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1842468 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1842468 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2654875 17869529 ~ 17903951 (-) False G1783895

Expression Profile