RNA id: LOC110502051


Basic Information

Item Value
RNA id LOC110502051
length 3372
RNA type mRNA
GC content 0.43
exon number 28
gene id LOC110502051
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15231827 ~ 15310852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAAGGGACCATTGGTAAAGGAACCTATGGAAAGGTCTAGAGTGAACAACAGGAAGGATGGGAGTCAGGCATCAGTCAAAGTCCTGCACCCAATTCATTCGACTGATGTTCATGTGTCCTCCTTGTCGAAGAATGTTGATGAGGAGATTGAGGCTGAGTACAACATCCTGAGGACTCTGTCCAACCACCCCAACGTGGTCAAGTTCTATAGCATGTTCTACAAGTCAGACGACCTCTGGATGGTTCTAGAActgtgcaaTGGGGGCTCAGTCACAGATCTCATCAAAGGCCTGCTCATGCGAAGCCAGCAGCTGCTGGAGCCCGTTATCACACACATTTTATACGGTGCCCTCTTGGGTCTCCAGCATTTACACAACAGCCAGATTATCCGTTGTGACGTCAAAGGAAACAACATGCTTCTGACCCCCGAGGGAGGAGTCAAGCTTGTTGACTTTCTAATCAATGAACGCCTTTTGGTGCCCATACGAAGTTACTACCTCACTATTGCTAATACACCTGCTTGTGTCATGTTTGTCCTGCCTGTGTCATCCCAGGTCATCGCCTGTGAGCAGCAGTATGACTCCACGTATGACGCCCACTGTGACGTGTGGTCACAGCCATAGAGCTGGCTGATGGAGACCCCCAATTGTCTGAGATGCACCCCATCAAAGCCCTCTTCAAGATCCCACGAAACCCTTCCCCTACATTACGCAATCGAGAGGAGTGGCGCAGAAGCTTCAGTCACTTCATTGCCTGGTGTCGGTTAAAATATTTTGAGACTCGTCTGTCTGTGACCCGCCTTCTGGAACACCCATTCATTAAACAGGCCCATGGCAAAGGCTCTCGGTCAACAGCTGTCCACACTCATCTGCGAGCATCAAGACCTGGGCTCCAAACTTAAGACCAAACATAAAATAATCAATACTCCTAAAACAATCATAATAGAGAGCAGTCCTGATGATGATCTGGTGAACCTGGAGGTTTTAGATGAGGAGACCCTCATCAAACACCTCTCGAAGAGATATTACGAGTGTCAGATATACACGTACGTTGGAGACATCCTTATCGCTCTCAATCCCTTTCAAACTCTAAGCATCTACTCGGAACAGTTCTCTAAGCTGTACCATGGGGTGGAGCGAGCCGACAGTCCTCCACACATCTTTGCTGCTGCTGATGCAGCATACCAGGGCATGATGACCTTCTGCAAAGACCAGGCACCTTGTGTGTGGAAtggagagagtggagctgGGAAGACAGAGAGTGCCCATCTGATTGTCCAACATCTCACCTGCCTGGGAAAGGCAAACCATCGGGACGCTGCGGGAGAAGATCCTCCAGGTGAATCCCCTGGTGGAGGCATTTGGGAACACGTGTACGGCCATTAATGACAATTCCAGTCTCTTTGCGAAGTACcagtgttgtgggggctgtgctttggcaaagtgggtggggttatatccttcctgtttggccctgtccgggggtgtcctcggagtgggccacagtgtctccTCCCAACACCAGACAGATAAAAGTGAGGTGTCTAATGCTGAGGCCTTAGAAAATGCTTCTGCCTTGCTCTGCATCGGCCCTGAGGTGCTCATGGAGGCCCTGGCGTCCCGCTGTGTGGTAACCCGGGGAGACACCATCATCCACACCAGTACTGTAGACAAAGCCGGGACGCCATGTCCAAGGCTCTGTACGGACACCTCTTCAGCTGGATAGTCAACCGCATCACTACCCTACTGCAGCCTGATATGAATAACTATGCTGCAGAAAGTGGCATGAATGTGGGAATCCTGGTCATCTTTGGATTCGAGAACTTCAAGAATAACTCCTTTGAACAACTTTGCATCAACATTGCAAATGAGCAGATTCAGTTTGACTTCAACCAGCACATTTTTTCAAATCGaatcaaaATGGAGTACCAGAGCGAGGGGCTGGATGCCAGTATGAGGACAACCATCCCATCCTGCACATGTTCCTCCAGAAGCCCATGGGCCTGCTCTCTCTGATGGATGAGGAGAGCCGGTTCCCCCAGGCCACCAACCAGACCCTAGTGGATACGTTTGAGGACAATCTGTACTACAAGTACTTCTGGAGACCAAAACTTATTGAGTTCTGCTTTGGGATTCACCATTATGCTGGCAAGacgcCTCTCCAGACACAGCGGCATCCTGGTCCTCCTCCACTCAAAGCCTCTCTCCCTGCGATGCGATACTGTGTGTGGATAAATCTCCAGTCTCCATTATCTCCTGAGAGGCTCAGCTCTCCATGGAGGgctctgttttttattttcactAAGCTGCCCCGTTTGGTTTCCTGCTGCTTGCTGCTATCTACAGATTGTGCAGCAACGGGATATTTTTGTGATAAGGTTTCCAAATACCCAGGAGATGAAGAAACGGTATTTAGAGATCATATAAGCAACTCTTCTTCCCGGTCTTTTCTGAGGGACTGTAGCACCCCTGTGCAGACAGCTTCTCCCAAATACCTATTGAAGGTGGACACCATGGAGATGATGCGGCACCCTGAGGAAACCACCAACATGAGACAGACCGTGGCCTCCTACTTCCGGTACTCCCTGATGGATCTGCTGTCTAAGATGGTGGTGGGTTGGCCCCACTTTGTGCGCTGCATAAAGCCCAACGATGACAGACAGGCGCTGGGTTCCTGTAAAGGGGAGGGTGATGGTGCAGCTGCGTTATGCTGGGGTCCTGGAGACAGTGAACATCCGCCACCAGGGATACTCCCACCGCATCCTGTTTGGAAAGTTTGTTAACAGGTATTACTACCTTGCTTTCCGGGCTCACCAGGTTCCTGCCACCAGCAAAGAGAATGCCGTTGCCATACTGGAGTCTTAGGGAAGACGAAGTTGCTTCAATGTTATGCTCCCTGGGTGTACTGTGTGTCAGTTGTTCCTGAACTACTACCATGTGGAGCAGCTGAACCTGCTGCTGAGAGAGGTGATCACACGGGGTGGTGGTGTTGCAGTCCTACATCAAGGGCTGGCTGGGGGGTGAGGCGCTAccgcagagaggaggagaagagaaaccACGAAGCCATGTTGATCAGTAGCTTTTTTCTGTCTGTAGCCTGGAGGGGCCACACGGCCCGACAGAATCTCAAGCAAACCAGGAAGGAGTGGGAAGCTGCAGCTGTTTGCATAATATCAGATATGAGGGCAGACACATTTTCAGTGATGAGAGAGAAGGTTGCCTCCGACAACCATAATAGACAAGTGAGAGACGACAGCAGAGACAAAGGGATAGAAGACACAGTAGTGAAGCcttgcagggagacaggcagTCTGCGAGACACACAGTGTAAACAAGGTAAGCCCGAGCACACAGCTGGCGGGTGCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039153 lncRNA downstream 11646 15219685 ~ 15220181 (-) True G1780931
TU2039148 lncRNA downstream 14956 15216634 ~ 15216871 (-) True G1780926
TU2039143 lncRNA downstream 18947 15212628 ~ 15212880 (-) True LOC118936393
TU2039120 lncRNA downstream 37546 15194026 ~ 15194281 (-) True G1780907
TU2039064 lncRNA downstream 68551 15161960 ~ 15163276 (-) True G1780855
TU2039255 lncRNA upstream 68580 15379432 ~ 15379685 (-) True G1781021
TU2039259 lncRNA upstream 75081 15385933 ~ 15386451 (-) True G1781025
TU2039261 lncRNA upstream 76912 15387764 ~ 15387970 (-) True G1781027
TU2039349 lncRNA upstream 223181 15534033 ~ 15534637 (-) False G1781106
TU2039350 lncRNA upstream 223181 15534033 ~ 15538622 (-) True G1781106
XR_005038963.1 mRNA downstream 17173 15211476 ~ 15214654 (-) False LOC118936393
XM_021579051.2 mRNA downstream 29192 15200372 ~ 15202635 (-) True LOC110501465
XM_021579049.2 mRNA downstream 44675 15165903 ~ 15187152 (-) False LOC110501463
XM_021579050.2 mRNA downstream 44675 15165903 ~ 15187152 (-) True LOC110501463
XM_021579047.2 mRNA downstream 78913 15148842 ~ 15152914 (-) True LOC110501462
XM_021579052.2 mRNA upstream 3307 15314159 ~ 15354447 (-) False LOC110501466
XM_021579053.2 mRNA upstream 3307 15314159 ~ 15354447 (-) False LOC110501466
XM_021579055.2 mRNA upstream 3307 15314159 ~ 15354447 (-) False LOC110501466
XM_021579056.2 mRNA upstream 3307 15314159 ~ 15354447 (-) True LOC110501466
XM_036958828.1 mRNA upstream 45998 15356850 ~ 15359998 (-) False LOC110501467
TU2036210 other downstream 1901332 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2058848 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 256651 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 375004 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1746270 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1746270 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2558677 17869529 ~ 17903951 (-) False G1783895

Expression Profile