RNA id: TU2039166


Basic Information

Item Value
RNA id TU2039166
length 257
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC110502051
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15231827 ~ 15310852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actccatattaatgcccatgattttggaagaagatgttcgacaagcaggtggccaaatacttttggtcatgGAGTGTATGATAAAGGTCAGACAGTAAAATGTCATATCTTTCCCTCACCCCTTTTTCATAGGTATTACTACCTTGCTTTCCGGGCTCACCAGGTTCCTGCCACCAGCAAAGAGAATGCCGTTGCCATACTGGAGTCTTAGGGAAGACGAAGGTAAAGTGGTGATGATTATCCAGATACATTGTAGT

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039153 lncRNA downstream 18385 15219685 ~ 15220181 (-) True G1780931
TU2039148 lncRNA downstream 21695 15216634 ~ 15216871 (-) True G1780926
TU2039143 lncRNA downstream 25686 15212628 ~ 15212880 (-) True LOC118936393
TU2039120 lncRNA downstream 44285 15194026 ~ 15194281 (-) True G1780907
TU2039064 lncRNA downstream 75290 15161960 ~ 15163276 (-) True G1780855
TU2039169 lncRNA upstream 4692 15243514 ~ 15243823 (-) True G1780947
TU2039170 lncRNA upstream 5055 15243877 ~ 15244111 (-) True G1780948
TU2039174 lncRNA upstream 9272 15248094 ~ 15248408 (-) True G1780952
TU2039175 lncRNA upstream 10827 15249649 ~ 15249964 (-) True G1780953
TU2039176 lncRNA upstream 13455 15252277 ~ 15252486 (-) True G1780954
XR_005038963.1 mRNA downstream 23912 15211476 ~ 15214654 (-) False LOC118936393
XM_021579051.2 mRNA downstream 35931 15200372 ~ 15202635 (-) True LOC110501465
XM_021579049.2 mRNA downstream 51414 15165903 ~ 15187152 (-) False LOC110501463
XM_021579050.2 mRNA downstream 51414 15165903 ~ 15187152 (-) True LOC110501463
XM_021579047.2 mRNA downstream 85652 15148842 ~ 15152914 (-) True LOC110501462
XM_021579052.2 mRNA upstream 75337 15314159 ~ 15354447 (-) False LOC110501466
XM_021579053.2 mRNA upstream 75337 15314159 ~ 15354447 (-) False LOC110501466
XM_021579055.2 mRNA upstream 75337 15314159 ~ 15354447 (-) False LOC110501466
XM_021579056.2 mRNA upstream 75337 15314159 ~ 15354447 (-) True LOC110501466
XM_036958828.1 mRNA upstream 118028 15356850 ~ 15359998 (-) False LOC110501467
TU2036210 other downstream 1908071 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2065587 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 328681 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 447034 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1818300 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1818300 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2630707 17869529 ~ 17903951 (-) False G1783895

Expression Profile