RNA id: XM_021579053.2


Basic Information

Item Value
RNA id XM_021579053.2
length 7596
RNA type mRNA
GC content 0.49
exon number 40
gene id LOC110501466
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15314159 ~ 15354447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACTAGTTACTGCCACCATTGGCATTATCATTCCATAGTTAGGGATTAGCTAGTTTACTGTAATCGTGGGTTGTGATGGTTTATCTATATAACTTTTGGTGTACAAAATTGCATGGTCACGGTTGATCAGCTGCCTACTGGACAGCAGTAGCCGAGACTACTACACAGCTTGATCACCTGCCAAACTGGATGTGGATTTGCAATGAAGCCAGGTCAGTGTGTTTGAACCAGTGATTTATATACGTCATTGGTTTAACACAATAGACGCGGAACACAAACAGTGAACACAATATCGAATGTATCGCGAGAAATTACGAGAACGtagcaacaggacaacaaaaatACATTTGTGTACAAGCCAGAGTGCATGATGGCGGCGTTGCTGCTACGCCGGGACAAGAAATCTACTGCTGCTCATTTAAAGTCAGACCTTAATCGgactgacaacagctctggtgtccGACAACTTCAAGAGCTGCTTGATTCTGTTCTTAATCCAGAAAAGCCACCGGCAGACACCGAGGCTCTTGACTGGTGTAAATGTCTAATAGCAGGAGAAGAAGGTTTCGAGGAGTTCTGCAAAACGGTCCGGTCCTATGACAATGCTACTCTATGCGGCTTGGTTTGGACAGCAAATTTTGTGGCATACCGCTGTCGGACTTGTGGCATTTCTCCTTGCATGTCACTCTGCGCAGAGTGTTTTAACAACGGCGATCACACAGGCCATGACTTCAATATGTTCAGGAGCCAGGCTGGTGGGGCCTGTGACTGTGGAGATAGTAATGTCATGCGAGAAACTGGGTTTTGCAGACGGCATCGGTTAAGAACCGGGGAGAATGTTCCTTCAGTCCCCCGAGACTTACTACTGATGTCAGAGATGGTCCTCCCTCGCTTCATCATCTGTATCATACAGTACCTAAGGGATGGATACACTGAACCAGACACATCAGCTGAGAGGGACCTACAGAAGGTCTTACAGCAGCTAGAGCCCCAGATCACCTTCCTAGAAGAACTGACGAAGATGGGCGGAgcaatgagaactgtgctgacaaagaTCCTAACGAATCAGCAAACATTCAAGGACCTGAGCATGGGTCAAGAAGAGAATGTATTTGCAAAAAAGAACTACGAGAACTACCTGTCAGCACTGAAGAACTCAGGCCTGGTGTCTGTGGAGGAGAAGGCCCAGACTGGGGCTGCAGAGCCCACACAAGGTTCTGAGACAGGGGCTCTGGGCTTACTGGGAGCCGCAGCACCATCCAGCTCTGAGTCCAATAAAGAGGAGGATCAAGATGGGCAATCTattggacagagaaagagggtgaaACTAAGTAGCTCAACCAAAGATCCATCCATTATGGACTCTCTGAAACACAAATGTTTTCTGGAGGAGTTGCTGTTTTGGACAATAAAGTACGAGTTTCCGCAGAAGATGGTTACTTTTCTACTGAACATGCTGCCAGATCAAGACTACAAGATCACCTTCACGAAAACATTTGTTCAACATTATGCGTTCATCATGAAAACTCTGATGAAAAGCCAGGAGTCAGATACCATGTCCAACCGCATCGTACATATCAGTGTACAGCTGTTCAGCAATGAGGACTTAGCACGTCACGTGACGGAGGAGTGTCAACTCCTCGACATCATGGTCACTGTCCTCCTCTACATGATGGAGAGTTGCCTTATCAAAAGTGAACTTCAAGATGAAGAGAACAGCCGCCACGTTGTGGTCAACTGCAGCGAGGCTCTGCTGAAGAACAACACTTACTGGCCTTTAGTTAGCGACTTTATTAATATTCTCTCACACCAAAGTGTAGCGAAGAAATTCCTGGAGGACCACTCACTGCTCATGCTGTGGATGAGCTTTGTGTCCTTCTTTCAAGGTATGAACTTGAATAAGCGGGAGTTGAGTGAGCACGTGGAGTTTGAGTCCCAGACGTACTATGCAGCATTTGCGGCCGAGTTGGAGGCCTGCGCACAACCAATGTGGGGTCTCCTCACACACTGCAAAGTCAAAGAGACACAGGAATACACCAAGACGGTGGTGCGCTACTGCTTGGAGACTCTGCAGATCTGGTTTGATGCCATTGGCTTTGTGGATGAGcTTGCTCCAAATCAGGTGACGTTTCACCTGCCACTGCACCGTTACTACGCCATGTTCCTAAGCAAGGCAGTGAAGTGCCAGGGGCTTGACCTGGAGAGTCTCCTCCCAGACCAAGAGATGCTCATGAGGATCATGGTCCATCCACTCCAGATTCAGGCAAGCCTGTCGGAGATCCACAGTAACATGTGGGTCAGAAATGGTCTGCAGATTAAAGGACAGGCTATGACCTACGTGCAGTCTCACTTCTGCAACTCTATGATCGATCCAGACATCTTTCTGCTCCAGGTGTGTGCCTCGAGGCTAGATCCAGACTACTTCATCTCTTCCGTGTTCGAGAGATTCAAAGTGGTGGACCTGTTGACCATGGCCTCTGTGCACCAGAATACTGCACTTGACGGGGAGCAGGAGAGGCCAATGCTGGAGGGAGCCTTGACGTTTCTCGTCATCTTGTCCAGTCTTCGCATCCACTTGGGCATGGCAGATGACGAGATTCTTAGAGCCGAGATGGTCTCCCAACTGTGCATGAACGACCGTACCCACAGTTCACTGTTGGACCTCATTCCTGAGAATCCCAACCCCAAGAGTGGGATCGTCCCAGGAAGTTGCAGCTTTGAGGAGATGCTGTCTGCCGTGGCTGACTTCAAAGCCCCCGTGTTTGAACTAGGGGGTTCCATGCAGCAGGGCATGTACACACCTAAAGCGGAGGTGTGGGAGAAGGAGTTTGACCCCATCATGGTTATTCTCAGAACAGTCTACCGTCGTGATGTCCAGTCAGCAATGGACAGATACTCAGCATTCTTGAAACAGTCCGGGATGCACACGACGGGGAATCCATGGCCACCGTACAAAGAGAGGACTCCTCTGCACCCATGTTACAAAGGCCTGGACAGGCTGTTGCACTGCAAGACACTGCACATTGTCATCTTCACACTGCTTTACAAGatCTGGCTGGATCACTCCAACATGTCTGAGCACGTTCTGTGCATGGTGCTCTACCTGATTGAGCTGGGCTTGGACAACCAGGTTGAAGAGGACAAGGGGGATGAGGAGCCTTGCATTGAGGAGCACTGCCATGACAGCTGGTTCCCAGGCACCAACCTCTTGTCCAACCTGCACCATGTCATCAACTACGTGAGGGTGAGGGTGCCTGAGACTGCCCCCGaggtgaagagggagagggagcccCCTGCCAGCACCAGCGCCGAGGCATCCAACTTCGGCCAGAATTCCAGGCGTCTGACAGGGAATTGGAGAGAGAATGTGCGGGAGGCGCAGGTGTTCAGCCTGGTGGCGGAGCGCCGGAGGAAGTTCCAGGAGATCATCAACCGCAGCAGCACAGAGGCTAGCCAGGCGGTGCGGCCCAAGAGCAGCTCCACTCGCTGGGTCCCGCCCGGCACGCCTCCCCAGCTGGTCACCGAGATCCTGGAGATCCACGAGAGCATGCTCTCCCTGCTCATCAAGCTGCACCAGAAGTTGTCGGCCAAGCAGAACTCCCTGTCGGCCACCTGGCTGGAGGACATGGACGCCAACCCAAACCGCCACGCCCACGGGGACGGCATCACCGCCATCGAGCGCATCCTCACCAAGGCGGCCACGCGTAGCCACCAGAGCAAGCGCAGCATCCAGGAGATCTGTGGGAAGGTCTTTCCTCCCGTCGCTCCCAAGAAGAACAGCCCCACTGCCAAGAAGACCATGGATAAGGAGGAGAGGCGTCAGAGGGCTCGAGAGAGACAGCAAAAACTCCTGGCTGAGTTTGCCTCCAGACAGAAGAGTTTCATGGAAACAGCCATGGATGTTGAATCCCCGGACACTGAAGCAGCCATGGACCTGGGTGCCTCTGAAGTAAAGGAGTCTGAGGTCCTCTATGACTGTGTGATCTGTGGCCAGAGTGGCCCTTCCACTGAGGACCGGCCCACTGGCCTGGTTGTTCTCCTCCAGGCCTCCTCAGTGCTGGGACACCGATGCAAGAGCGACGAGGCGAAGAAACTGCCAACCACTGACGAGGAGCGCATCTACCCAGCGGACACGTGCGGAGCTGCTCACGACGTCAGGCTGGCTCTCATGCAGAGCTTCTTCAAAGATAGTTCCTGTCTGCAGTCAGTCTCAATAGGCTGGGATGGAGGTGTGTATGTGCAGACCTGTGGACACACCCTGCACATAGACTGCCACAAGTCCTACATGGAGTCACTGCGGAATGACCAGGTGATGCAGGGCTTCTCTGTGGATAAGGGAGAGTTCACCTGCCCGCTGTGCAGACAGTTTGCTAACAGCGTGCTGCCCTGCCGCCCGGGCCGGAGCACCGAGGTGGTCAGCTGGCACATGCCCAGCAACAAGAAGACCTCTGTGCTGGTGAAGGAGGTGGAGGACCTGCAAGAGCAGCTGGGATTTTTCCCAACGGAGTCCAACCTCAGTAAGGAGATGGAGTTGGTTATCAAGGACATCAAGAACACCACCCAGAGGAAGTACATGGACTATGGCAAGAACCCTGGTTCCCCTGACAACGACTTCCTCTTCATGTACTCTGTGGCCAGGACAAACCTGGAGCTGGAGCTGGTGCACCGTGGAGGTAACCTGTGTTCTGGAGGTGCCAGTGGTGCAGCCAAGCGCTCCTGTCTCAATCAGCTGTTCCACGTGCTTGCCATGCACATGCGTCTGTACAGCATTGATTCTGCTTACAACCCCTGGACCAGGTTGACCCAGGTGGCTCCGAGCAGAGACAACTGCCTGGATGACGAGAGACCAGAAGTCCCCATGCTGTTCAGAGACTGCCCATCCCTGCTGATCATCTTTGTGTTGACCATGCCACAGCCGCTACGCAAAGaACACTTCATCTGTCTGGTGAGGATGCTGTACAACCTGCAGTACACCCAGGCCCTGGCTGCTCTCTCGGCCAAGTTCAGCCCCGAGGAGAGGCAGGCCTGGAGCACGTCTGGAACTCTCAAGAAGAATGCTTTCAATGCCGAGAAGTCCTATGAAGCTCTTCTCAGCCATGTCATCACTGAGCTGTCCAAGGTGAAGACTGTGTATGACGTGAACACCGACGAGCCATCCATGCTGAGCTCCAGTGTGTGGTCCCCACAGTCCATAGAGTACAGCCTCCAGCAGTTCTGCCTGCCTTACCTCcgcctctcctgtctcctgcagCACCATCTTTATGGGGACAACCTGTCAGGCTGCCCGGAGGAAGAAGAGTTCTCAGGCCTGGCTGGCTGTTTAGGGCTCCTTGACCCAGCCCCTCAACCATCTAACCCCATGTACAGTGCCTCATGTCTGGACTGGACGGTCAGTGCTTTCGACCTGATGTCTCAATGGTGCTCTGAGGTCACAGGGCTCGCCGACACTCAGGCTGAGAAATCAATGACTTTGCTTGTCCAGGATCTGCAGTGGGCGTCCCCCCACCTCCTCCACTTACCGGACAACTACAACACCATCTTCCAGTACTACCACAAGAAGGCCTGCACTGCCTGCAAAAAAGTGCCAAAGGACCCGGCGCTTTGCCTCGTCTGTGGCACCTTCGTCTGCCTCAAAGGGCTGTGCTGCAAGCAGCACGGGATCTGCGAATGCGTTTGGCACTCTCAACACTGTGGCGCCGCCACAGGCATCTTCCTATTGATCAACGCCtcggtcatcatcatcatccgaGGACACCGCTTCTGCCTGTGGGGCTCCGTTTACCTGGATGCCCATGGAGAGGAGGACCGCGATCTACGCCGTGGAAAGCCCCTGTTTCTATGTGTGGAGAGGTATAGAGTGCTGGAGCAACAGTGGGTCTCGCACACCTTCGATCACATCAACAAGCGCTGGGGGCCTCACTACAACGGACTGTAAGGTCACCTGAACCCACACCCTTATGGGAAAGAATCTCTTTGGTTTATGTGTCTGCCTCTGTATAACATATGGGAATCTTATCATGTGatataaacaaacatgcagtgaGGGTGTTACTGCCACAGCCTTGGTTTATGTGAAGTTTTGTGTACAATCATGCCTAAAGACTAACAGtgtgtgatttttttattttatttaagtgATTTACTGTGTGGATTTTAACTGGGAGAAAGCACAAATTTTCCCAGTAACAGATTGGTTCTGAAGTGGTTTAGAAGACAGAAATATTTTACACTGATTGGCTAACAGTATGAGCTCGAGAGATATACATATAGACAAATTTGCCCTTGGTAATGTTAATGATAAGCATATTGTCACAATGTATGGGTTGGTGCATATCCCTCATTTTTCAGACTTTGTACTGCTGGCATGGGTTTAAAGCTCTTGATAAGTATAGCGATGTTATTGCAAATTGTGTTCTCGGTGTGTTTGTTGGGACATTATGGTAGGTGACAAGTCCACTCAGAGTTTATTGCCGTCAAGCACAGGCTCTTCTTTTTTACAGTGTAGTTGCAATTCATCCTCAGGTATATTTGTTTTGTTGCTGTAGTTTTAGAATACAacattttaaatatttaaataaatgCTGGTGCTCATTGTTCAAATAAGTAATTTTACTTTTTGTAAAGATTTTTTATTTTCTAAAGAAATAAATGCTTTACGTTTATGGTAGATGACTGGCAAACATGGTCGCCATCGCTATTGGTCTTTGCAGTCCTGCCTTTACTTAGGCTCCGGCCAGGTCCCTGAGGAAACTCAATGACCACTCACCAGTCTGGCCACAGTAGAGTACACATAAGACTGGTGTGGAGTATCTGTCGACTAATTGGCATGCTCTTTTTCCAAAACTTACATTGCTGAAAATCATTTCAAGTGCATTGGGATTTTGCTAGAGTTTAAATATTTGAATTTGGGGACTCAATGCATAAGTTATACTACTGATATGGCATTCTGTAAGGGAATGGTTGTAGTTTCATCTTTTTATGCTGATGAAGACTTTTGCAGTTTTAGATAGTACAGTTGAATAATTTTTTGTGAGTACATGGGCAATACTGGTTTGGCCTTTCACATTTCCTTTGAGTTGCTCTGTGAAGTTATAGTAAATGTATTGGGAGATGTATATGGGCGCAAATGCAAAACCCTATCTTTGATTAACTTAAGGAACTAGTTGAAGATGGCTTTCGGTCTCTTCAAATCGTTATCTTTGAAACTCCATAAGATGTCATTTAGTTGGTTTTGAGAAGTGTAATAGTGTTAACCTTAACAAATGGATGTCATTCACCTAATCCACACTTGTggtacaatattttttttatactgtCAAATAACCAATCTGTTTATTTGCTTTTGGTTGCCAAAGGTTATAATTAAAGTAgctatatttacagtgccttcggaaagtattcagaccccttgactttttccacattttcagTTACAGGCTTATTCTGAAATTGTTTTTTGCCCTCAatttacacacactaccccataatgataaagcaaaaatatatttttttaaaacaacaaaaaaactgatattacatttacataagtattcagaccctttactcagtactttgttgaagcacctttggcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039145 lncRNA downstream 44030 15269756 ~ 15270129 (-) True G1780923
TU2039192 lncRNA downstream 44569 15267522 ~ 15269590 (-) True G1780969
TU2039186 lncRNA downstream 52208 15261474 ~ 15261951 (-) True G1780964
TU2039184 lncRNA downstream 54395 15259561 ~ 15259764 (-) True G1780962
TU2039181 lncRNA downstream 55918 15258018 ~ 15258241 (-) True G1780959
TU2039255 lncRNA upstream 24985 15379432 ~ 15379685 (-) True G1781021
TU2039259 lncRNA upstream 31486 15385933 ~ 15386451 (-) True G1781025
TU2039261 lncRNA upstream 33317 15387764 ~ 15387970 (-) True G1781027
TU2039349 lncRNA upstream 179586 15534033 ~ 15534637 (-) False G1781106
TU2039350 lncRNA upstream 179586 15534033 ~ 15538622 (-) True G1781106
LOC110502051 mRNA downstream 3307 15231827 ~ 15310852 (-) False LOC110502051
XR_005038963.1 mRNA downstream 99505 15211476 ~ 15214654 (-) False LOC118936393
XM_021579051.2 mRNA downstream 111524 15200372 ~ 15202635 (-) True LOC110501465
XM_021579049.2 mRNA downstream 127007 15165903 ~ 15187152 (-) False LOC110501463
XM_036958828.1 mRNA upstream 2403 15356850 ~ 15359998 (-) False LOC110501467
XM_021579057.2 mRNA upstream 2403 15356850 ~ 15360326 (-) False LOC110501467
XM_036958829.1 mRNA upstream 3263 15357710 ~ 15360327 (-) True LOC110501467
XM_021579059.2 mRNA upstream 7196 15361643 ~ 15365325 (-) False klhl23
XM_021579060.2 mRNA upstream 7196 15361643 ~ 15365568 (-) False klhl23
TU2036210 other downstream 1983664 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2141180 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 213056 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 331409 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1702675 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1702675 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2515082 17869529 ~ 17903951 (-) False G1783895

Expression Profile