RNA id: XM_021579064.2


Basic Information

Item Value
RNA id XM_021579064.2
length 3175
RNA type mRNA
GC content 0.43
exon number 13
gene id LOC110501472
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15394975 ~ 15401706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCAAAATGCACTGACTTTTCCTGTCGCGCCATCTTTAGAAAACATTGTGGAGGAAGCGCTGAATGAAACTCGATTTCACCTTGTTGAGGAGAACTACCGTGAGATATTGGCCTCAGttgaccaactgagctaatttCTACAGAAGTTTGATAATGGGAATAAAAGTTCAGCGTCCACGCTGCTTTTTTGACATTGGCATCAGCAACGTGCTGGTTGGCAGAGTTGTGGTAGAATTGTTTTCTGACGTCTGCCCCAAAACCTGTGAGAACTTTCGATGCCTCTGCACAGGTGAGAAAGGAATTGGAAAAGGTACACAAAAACCTCTGCATTACAAAGGATGCCTATTCCACAGAATTGTGAAGGACTTCATGATTCAAGGAGGAGACTTCAGTGAAGGCAATGGAAAAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAGATGAAAGCTTCTCTGTCAAACATAACAAGGAGTACCTCCTGTCAATGGCAAACAGGGGTAAAGATACCAATGGATCCCAGTTTTTTATAACAACAAAACCCACACCGCACTTGGATGGTGTCCATGTGGTTTTTGGCCAAGTGATCTCTGGCCAAGAGGTCGTTCAGACAATGGAGAGTCAAAAGACAGATACTGGCAGTAGACCATACTCTGAAGTGAAAGTTATGAACTGTGGAgagctcattccaaaatcaaaaGCCAagaaagaagagaagaaaagaCTAAAGGCCGTCTCCAGTGGCAGCGACAGCTCAAGTGACTCTGACAGTTCTGACGATGACTCTTCTGAATCTGAGGGTGAATCTGATAAGGAATCCAAGAAACGGAAGAAGAGGCACAAGAAAGAGTCCAAGAAAAAGAAGGAcaagaaacagaagaagaagaaagataaAAAAAAGTCTGAGGCTGGCAGTGGTgatgagaaagaggaagaggttaCGTCTACGGTACGGCCAGAGGAAATCCCTGTTATCCCAGAAAATAGTTTCCTTATGAGGAGAAGTCCTCAGCAGCAAAAAGAAGAGTTTGGAAAGGAGagggaaaaaaagagggagagggaaaggcctAGGGAGAGAATGTTTAATTGTCAGTCAGCATATCAGAGGAGCCTTCTGATGACAAGATCAGGCAGGACGATTAAAGGCAGAGGTCCAAGACGGTACCGAACTCCGTCACACTCCAGGTCGAGGTCAAGGGACCGTTTCCAGCGTAGTGAGACTCCTCCACACTGGCGCCATGAGATGCAGCGTGCACAAAGGGCACCAAGAGCATCCAGCGGAGACCGTTGGATAAAGGGTGACAAGGGTGACATGACAGAGGACAAGAATGAGAGTGGCATAGCtccaagaggaagagagaggaagacctCTGAAAACAAGCATGAACACGCTGCTGAAATACAGAGTAAAAACCGAGAGGAGAAGAAAGGTCGCTCCCATAGATCCAAGAGCAAAGAAAAGGACACTTCTAAAACTGAAGACAAGCACAACAAACACAAGGCAAAGAAGGCCAAATCTCGAAGCCGCAGTAAGAGCAAAGAGAAAAGTGGTAGGTCCAaaagcagagagagggatcagAAACATAGCAAAGGGGATGATAAGAGAGGCAGCCTAAGAAGCAAGGACAGACAcctcaaagaaaaagccacagAGTCTGGAACTCAAGACAGTGTTAGAAGTAAAGAACACTCTAAACCCACTGAGGCTGACAAGAACCGAGAGGAGACCAAAGGAAGAAATGGTGAGAAGCTTAAGGCAAAGTCTAGAAGCAAGGAGAGGAACTCTGGAAAGGACAGAAACCGATCTCTCAGCAGaagcagggacagggggagacatGCCTCATCTCGAGACAAAGAGCAAGGACGGGACAGAGAGCGAGGTAGGGAGCGCAGTAAGAGCAATGAAAGACGgcgccacagagagagagaggacaaaaggAGAGGTAGATCCAAGAGCCGAGACCGGACAAGGAGTCCAGACAAGGTTAAGAGCAGAGACTCCCGTAGAGGCAGGCGCTCCAGGAGTAAGAGCAACAATCGAGACCATAGCAAAGACGGTTCATCTCATCAGAGGAAGAACAGAGACAGTGAAGACACTCACAGACGAAGGAGGTCCAAGAGCAGCAACTCTGAGAGTGAAGGGGAGGGAAAAGGGAAGGACAGGGGTAGAAAGAGCCCCATCTCCAAGAAGAAAAGGGAGGGAAGCCCAGAAAAGGAGTCCTCTCACAAGTCCAAAGACACAGGGAAAAGCCCTGAGCGGAATCAAAAGTCAAAGAGCCAAGAGAAGGATAAAAACCACAGCAAGAAAAAGAAGTACAGCTCAAGTTCTGATGACTGTGATTAGTCCAGTCAATGTCCACTCTTGTCCATCATCTAAATGAAAAATTCACACGTTTATACCTAATAACGTGTGTGGGTGGTTCTGCTGTAGAACGATTTTAGACAAATACTACAACCAATCCAATTCTGGAACATTTGTACAATTTAAGATTTCAAAAGTTTTGACAGCTAGGAGACATTttttgggggaggaggggggttcAGTCAGACAAATTTTTACAAATGTTGGAAATGTAATGTGCATTGAGGGTTAGTGGTGAAATGGCTGAACATGTGACTTTTGGAAGGAACATTTGACAATAAAAAGTTTGTCAGGTTGAattattatttttacttttaTTGTTGTCTGGTACTGAGGGGTCATGTTATTCCAGTGTGATAATTGTAATGGAAGGGATGAGTTTGATGTCCTGTGTTGTTCTTTCTGGCCTTAATGCCTGACTTAACTAATATTACATGGATACATCACCAGTATGACTAATCATATGGTTATTTTTTATTAAGTGTTTgcattaccaactgtcacatttGTCACTGAACATACTGTAAGTGCTACATATAAAACTGTCTGACATAAGTGTATATGTCAGTAGAGGCTCGATTTGATTTGAAGGGCTGATTATTAAAATGGTTGTGGTGTTAACagatacataaaaataaaaaaaagtttgttACCTGGCTGTTTCAGAGAATTCTAACTTTTTCCTGACAGTCTCAAATTAATTAGGAACGGACACATTGCTTTTTGTATTATTGtatacattttcttttttttttagacGTGCTTATGTTCAGATTCCTGCCCGTACAtcttttaaaatgtaaaaaaataaa

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039261 lncRNA downstream 7005 15387764 ~ 15387970 (-) True G1781027
TU2039259 lncRNA downstream 8524 15385933 ~ 15386451 (-) True G1781025
TU2039255 lncRNA downstream 15290 15379432 ~ 15379685 (-) True G1781021
TU2039145 lncRNA downstream 124846 15269756 ~ 15270129 (-) True G1780923
TU2039192 lncRNA downstream 125385 15267522 ~ 15269590 (-) True G1780969
TU2039349 lncRNA upstream 132327 15534033 ~ 15534637 (-) False G1781106
TU2039350 lncRNA upstream 132327 15534033 ~ 15538622 (-) True G1781106
TU2039383 lncRNA upstream 166223 15567929 ~ 15568534 (-) True G1781137
TU2039444 lncRNA upstream 270517 15672223 ~ 15678026 (-) True G1781192
TU2039456 lncRNA upstream 288083 15689789 ~ 15690167 (-) True G1781203
XM_021579062.2 mRNA downstream 15831 15365708 ~ 15379144 (-) True phgdh
XM_021579060.2 mRNA downstream 29407 15361643 ~ 15365568 (-) False klhl23
XM_021579061.2 mRNA downstream 29407 15362529 ~ 15365568 (-) True klhl23
XM_021579059.2 mRNA downstream 29650 15361643 ~ 15365325 (-) False klhl23
XM_036958829.1 mRNA downstream 34648 15357710 ~ 15360327 (-) True LOC110501467
XM_021579068.2 mRNA upstream 13194 15414900 ~ 15423802 (-) True klhl41a
XM_036958835.1 mRNA upstream 23012 15424718 ~ 15432603 (-) False bbs5
XM_036958836.1 mRNA upstream 23012 15424718 ~ 15433656 (-) False bbs5
XM_021579071.2 mRNA upstream 23012 15424718 ~ 15433868 (-) False bbs5
XM_021579069.2 mRNA upstream 23012 15424718 ~ 15433880 (-) False bbs5
TU2036210 other downstream 2064480 13279280 ~ 13330495 (-) True G1778224
TU2036122 other downstream 2221996 13168780 ~ 13172979 (-) False G1778140
TU2039382 other upstream 165797 15567503 ~ 15568534 (-) False G1781137
TU2039451 other upstream 284150 15685856 ~ 15825214 (-) True b3galt1b
TU2041294 other upstream 1655416 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1655416 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2467823 17869529 ~ 17903951 (-) False G1783895

Expression Profile