RNA id: TU2038818


Basic Information

Item Value
RNA id TU2038818
length 2368
lncRNA type sense_over
GC content 0.39
exon number 4
gene id lrp2a
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15503060 ~ 15572970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgaaacgttggtgttTTACCCAagaaattactgggagtttatttacatttttattttatttcacctttatttaaccaacaatctatgtacagtgtgtgcgtacgtagaagagtagggagatatactgtatacatagAGCGTGCGActgtcacggtcttcctcctcttcatctgaagaggagagacgaaTCGGAGGACCAAAAAGGCGGGGTTTGTGTTCATCTTGatatttaataaagaaaacactgaacactgaaacacactatacaaaaacaataaacaaaataatGACCGTGAcgctaatgagaactgtgctgacacaagcaatcaacatagacaatcacccacaaaacctaacacaaaacaggctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggcccaaacacagaaacagacaaactagacatccaacatagaatgcccacttagatcacaccctgaccaaacaaaacatagaaacatacaaagcaaactatggtcagggtgtgacagcgaCTCTCTTTATTTTTCTAGCTTCCAGTTTATTCttcattagtcagcacctccactcTAAATAATGTTCTCTGGGGGTGCTCCAGCTCCAGCTTTTTATTACTGTGTTATTAACAACACTAATAGACAGTCAACACATTCCCAGCCAGGGTTCAGTAGTTAATAAGGTAAAGCACAAATTGCAGGGCATTGCGTTCATACTACAAACCTGAAATACATGTAGGTGATAGATAGCAATGTGTCATCTTTGAGGGACATGATGAataacactgtctctctttcaGGATGACAACTTTGCAGTGGAAGCGGGGAGGCAGCCAATCACATTTGAGAACCCTCTGTATGGCACTGCAGCGGCTGGATCGTCTAGTGAGCCTGCTGTCATCCACGCCACACAGGTGACTGTTACTGTTAGTGGTGAGCAGATAGAGAAGAACCTTGCGAACCCAGCGTACCACACAGATCAGATTGTGTGCACCGTGGACAGTTCCACAGCCAGAGCCAAGCCTGTTCAGGAGTCCAGGTGGAGCTTCTTCAAAAGAAAATTTAAGCCAAGCACAACTTTTGAAAACCCTACCTACTCAGAGATGCAGAATGAAAAAGCAGTAGGAAGCAATGAGGACAGTTCCTCCACTGACCCCTCTCCCTTTGCCCCACCCGCCAAACCCTTCAAGAGGGATCGTCCCAGCACCTACTCACCAACTGAGGACACTTTCCGAGACACAGCGAACCTTGTTAAAGAGGACAGCGATGTGTAATCCCGTTTCCCACAGATGGGAATCAAAGACACACTCTCCTTTGCACAGAATCTATTTTTATATGCAgcctgtgtaaaaaaaaaaaaaaaacgaagatTGTTTTGAGAAAAGAAATTAGACAAACGTTTCTTTAGCATACAGAAAAGAGGTCTGTCGTGACTATGCCTTCGGATATTTCTGATGCCAATTTTTGtttcctgattttttttttattgtgatgtTATATATGTATATCTTTGCACTGAAGCTGCTGATAGAAATGTTATAAATATGTTGTACATTTGTAAATTTGAAGAGTACGATTTTTGTCGATAATATTCTCTGGCTGTTGGAAGTAGATGAACGTATCGATAGTGCTTCATAAACAAAGTAACACATGACAGGTGAAGTGCATTGTGAATGTACAGTAGATATATCGCATTAGGACAATGTTTTGAAAGGATAACTAACTATTTTTACCACTGAACCAAACTGAAGATGTATGCATTTTATCTTGCATGTTTATATACCTCATTTCAGGGAGCAAAACAAACACAAACTGATCCAATTACCTTAGCTATTCTAAATCTCTAGATGCTGTAAAAAGAAAACTATCAAAATTCTGAATGTCTCGAAGAATAGTATGCTAAGCATATTTACATGGTACTTACGTTCAAACTTGTAAAAACAATTCCCTGACTTTTTTTGGCATATATAAATCAAAACTATCATATTTAGGTAAGACTTTTTAATGAATAATGATGGCctctttttaaaattaatttggAACAATACTTGAATATGCCAATGATTTTAATGTGTGAAGATGTAACATTTTGGACATCTCTAGTGACTCTGGAGCTGGTAAAGTCCAAGAGCATCTGAAGATACGGAATTTGAAGAAATTAGGAATCTGACTGTCATTTTCTAAACATGGATTATACATCCTGTGCTCTTTGATTGTTTTATATTGTGATGAAAATGACAAATAAAGACTGTATCAATGATCATTCTAAATATGCTCAAATGGTTTTCTAGCTAGCAAAGTGGGAGACGAAATTTATGCTGCTGAGACGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038809 lncRNA upstream 89277 15480346 ~ 15481005 (+) True G1780625
TU2038766 lncRNA upstream 124543 15444706 ~ 15445739 (+) True G1780585
TU2038765 lncRNA upstream 128112 15441928 ~ 15442170 (+) True G1780584
TU2038764 lncRNA upstream 129112 15440926 ~ 15441170 (+) True G1780583
TU2038761 lncRNA upstream 132377 15437689 ~ 15437905 (+) True G1780580
TU2039548 lncRNA downstream 264043 15837013 ~ 15838727 (+) True G1781292
TU2039560 lncRNA downstream 286483 15859453 ~ 15860977 (+) True LOC110501488
TU2039597 lncRNA downstream 380583 15953553 ~ 15972242 (+) True G1781333
TU2039630 lncRNA downstream 475883 16048853 ~ 16049113 (+) True G1781365
TU2039701 lncRNA downstream 476824 16049794 ~ 16050057 (+) True G1781415
XM_021579065.2 mRNA upstream 155162 15401792 ~ 15415120 (+) False fastkd1
XM_036958831.1 mRNA upstream 155162 15401792 ~ 15415120 (+) False fastkd1
XM_036958832.1 mRNA upstream 155162 15401792 ~ 15415120 (+) False fastkd1
XM_036958833.1 mRNA upstream 155162 15401792 ~ 15415120 (+) False fastkd1
XM_021579066.2 mRNA upstream 155450 15403692 ~ 15414832 (+) False fastkd1
XM_021579075.2 mRNA downstream 17750 15590720 ~ 15607266 (+) False abcb11a
XM_021579077.2 mRNA downstream 17843 15590813 ~ 15607266 (+) True abcb11a
XM_021579079.2 mRNA downstream 37277 15610247 ~ 15614355 (+) False spc25
XM_021579080.2 mRNA downstream 37398 15610368 ~ 15614355 (+) True spc25
XM_036958848.1 mRNA downstream 74943 15647913 ~ 15665784 (+) False stk39
TU2038754 other upstream 136462 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 222616 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 526639 15038099 ~ 15043643 (+) True G1780353
TU2037699 other upstream 667022 14902795 ~ 14903260 (+) True G1779636
TU2037181 other upstream 1490543 14079497 ~ 14079739 (+) True G1779170
TU2039549 other downstream 266634 15839604 ~ 15848595 (+) False G1781293
TU2039550 other downstream 266634 15839604 ~ 15848595 (+) True G1781293
TU2039714 other downstream 489787 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 699419 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 1433064 17006034 ~ 17041673 (+) True G1782390

Expression Profile