RNA id: XM_021579075.2


Basic Information

Item Value
RNA id XM_021579075.2
length 5027
RNA type mRNA
GC content 0.47
exon number 28
gene id abcb11a
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15590720 ~ 15607266 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTCCTCTCGTAGGAGGGATTCTTTATTGTTGGTAGTGACCAAATGGCTAGGATATCAGAGGAGTCCTTGACAGGAAGACAAAACAGACCCAGCGAGGACGTGCCTGTCAGAGTTAAAGCTACAAAAATGAAGGATCCTATTTACTTGAAAAAGGTCACTTCTCTACaggaggacacagacagagaataTTGCCGTACAAAAccagacagagaagaagaagAGAATGAAAAAGGAGAtggaaagaaaaaagaaaagctCTTGGATGTTGGATTCTTTCAActgTTTCGATTTGCAACATGGAAGGACACACTGATGATGGTAGTGGGGGGCTTATGTGCACTAGTCCACGGGGCAGCCTCCCCTCTCATGCTCTTGGTGTATGGCATGATGACGAACACCTTTGTGGCATACGAGCTAGAGGTCCAAGAACTGGCAGACCCCAACAAAACCTGCATTAACAACACCATCACCTGGATCAATGGCTCCATATTTGAAATAGCAGAGAACACAACGGTCTTCTGTGGGGTGGATATTGAAGCACAGATGACCATGTTTGCATATTACTATGTTGGTATTGGATTAGGAGTCTTGATTGTTAGTTATTTCCAAATTGCCCTCTGGGTGTCTGCTGCTGCCAGACAGATCCAGAGAATCAGGAAGACTTACTTTAGGAAGGTGATGCGAATGGAGATTGGCTGGTTTGACTGCAATTCAGTGGGAGAATTAAACACCAGGATATCAGACGACATCAACAAGATCAACAATGCGATAGCTGACCAGGTGTCTATCTTCATTGAGAGGATCTCCACTTTCATCTTCGGCTTCATGGTGGGGTTCATTGGAGGATGGAAGTTGACCCTGGTGGTCATCGCAGTAAGCCCACTAATAGGACTTGCTGCTGGACTAATGGCCATGGCTGTTGCCAGACTGACAGGTCGGGAGCTCCAGGCTTATGCCAAGGCAGGGTCAGTAGCTGATGAGGTACTGTCATCCATCAGAACAGTGGCAGCCTTTGGAGGGGAGGACAAGGAGGTTGAAAGGTATGACAAAAACCTTATTGAGGCTCAGAACTGGGGTGTGAAAAAGGGGACGATCATTGGAGTGTTTCAAGGATACCTGTGGTGTATCATCTTCCTCTGCTATGCTTTGGCATTCTGGTATGGCTCAAAACTGGTCATCGAAACCAAAGAGCTATCCCCTGGTACTCTCATCCAGGTATTCTTTGGAGTTCTCATGGCAGCTATGAACCTGGGTCAGGCCTCACCATGCCTGGAAGCCTTCGCCTCAGGTCGAGCTGCAGCCAAGACCATCTTCGATACCATTGACCGAGAGCCAGAAATCGATTGTTTCTCGGAGAAGGGCCACAAACTAGACAAGGTCACAGGTGACATTGAATTCCACAACGTCACATTTAACTACCCCTCTAGGCCAGATGTGAAGattttagattctttgaGCATGCTGATCAGAGCAGGAGAAACCACAGCTTTTGTTGGGCCAAGCGGATCAGGGAAGAGCACCACAGTTCAACTCTTTCAGAGATTCTACAACCCCAAGGAAGGAATGTTGACTTTGGATGGCCATGACATCCGCAGCCTGAACATCCAGTGGCTTCGCTCTTTGATTGGTATAGTAGAGCAGGAGCCGGTGCTGTTCGCCACGACTATCGCTGACAACATCCGCTACGGGCGACCCGGGGTCACCATGGACGACATCATCCAGGCCACCAAGGAGGCTAACGCCTATAACTTCATCATGGACCTCCCGCAGAGGTTTGACACGCTTGTGGGTGAGGGTGGTGGtcagatgagtggaggacagaagcAGAGGATCGCTATTGCCCGAGCTCTGATCCGCAACCCCAGGATCCTGCTGCTGGACATGGCTACCTCGGCTCTGGACAACGAGAGTGAGGCCATTGTACAAGAGGCGCTTGACAAGGCTCGGATGGGCAGGACAACCATTACCATCGCCCACCGCCTCTCCACTATCCGCAATGCTGATGTCATTATTGGCTTTGAGCACGGAAGGGCAGTGGAAAGCGGTACACACAATGATCTTCTAGAAAAGAAGGGGGTCTACTTTACTCTCGTTACCCTTCAGAACCAAGGAAATGACATGCCCAGTGACAAAACAAACACAGATCCGGACAATGAAACCATTGAGGAAGAAATCCTTCAGAGTTTCAGTCGAGGAAGCTACGAATCTGGGTTGAGGCAATCTCTTCGCCTGCGATCTCACACCCAGCTGTCAAACGAACTCATCCCTGATGCCATAACTGGCAGTATCAGAATTAAATCAGACAAATTCCTTGCCATAATGGAAAACGAGATGGAACCTCAAAGGTCAAAGCATTCCAAGGAGGAAGCAGAGGAACGTGTGGAGCCAGCACCAGTGGCTCGAATCCTGAAGTACAACAAGTCAGAGTGGCCTTACATGCTATTGGGATCTATAGGAGCTGCCATCAACGGCTCCGTCAATCCAATCTATGCTATCTTATTCAGCCAGATCCTTGGGACGTTCTCTATACGTGACCTGGATGAACAGAGAGCGCAGATCAATGGAATATGTATCCTGTTCTGCGCTGTGGCGGTTACAAGTTTCTTCTCTCAATTCTTACAGGGCTATGCATTTGGGAAGTCTGGGGAGCTCCTGACCCGCAGGCTAAGGAAGGTGGGCTTCCAGGCCATGTTGAAACAGGAGGTAGGCTGGTTTGATGACCCCAGGAACAGCCCTGGAGCTCTCACCACCAGGCTGGCCACCGACGCCTCCATGGTCCAGGGGGCAACTGGATCGCAGATTGGGATGATTGTGAACTCCTTGACCAACATCGGAGCGTCTTTCATCATTGCGTTCTCCTTTAGCTGGAAGTTAAGCTTGGTAGTGGTTTGCTTTTTACCACTTATTGGCTTGTCTGGGGTCTTCCAAGCCAAAATGCTGACAGGTTTTGCAAATGAGGATAAGAAGGCAATGGAAGCAGCAGGACAGGTGTCCAGCGAGGCTCTAGCCAACATCAGGACCATCGCAGGGCTGTGCAAGGAGAGCACATTTGTGGAGACCTATGAGCAGCAGCTGGAGGCTCCGTATAAGTCTGCCAAGAAGAAGGCAAACATCTACGGCATCTGTTTTGCCTTTGCCCAGTGTGTTATCTTTATGGCGTACGCCGCCTCCTTTAGATATGGAGGCTATCTGGTCAGCTCTGAAAGATTACACTACCTGGTGGTCTTCAGAGTGATCTCTGCCATTGTGATCAGTGGGACGGCGCTGGGAAAAGCTTCCTCATTCACCCCAGATTATGCCAAAGCCAAGATTGCAGCGGCCCAGTTCTTTAAACTGTTGGACCGAGTCCCCAAAATCAGCATGAGTCAGATAGACGGGGAGAAATGGGATGATTTCAAAGGGGAGTTAGAATTCATCAACTGCAAGTTTACATACCCAACCCGGCCTGACATCCAGGTGCTAAATGGACTACTGGTGTCTGTGAAACCGGGCCAGACCCTGGCCTTTGTGGGCTGTAGCGGCTGCGGGAAGAGCACTAGTGTGCAGCTGTTGGAGAGGTTCTATGATCCAGATGAGGGCAGAGTGTTGATCGATGGCCGTCCATCACACACTGTCAACGTGCCCTTCCTGAGGGCTCAGATTGGCATCGTCTCCCAAGAGCCCGTGCTGTTTGACTGCAGTATTGCTGAAAACATACAGTATGGTGATAACACCAGGAGCATGAGCATGGAGGAGATTGTTGATGCTGCAAAGAAAGCTTATCTCCATGACTTTGTGATGACTCTGCCAGATAAATATGAGACTCCGGTTGGCGCCCAGGGCTCCCAGCTCTCCAGAGGGCAAAAACAACGCATCGCCATCGCTCGGGCAATAGTCAGGAACCCTAAGATCCTGCTTCTGGATGAGGCCACCTCTGCGTTGGACACAGAGAGTGAAAAGACAGTGCAGGCGGCTTTGGATGAGGCCAGACGTGGACGCACCTGCATTGTCATTGCCCACAGACTGTCTACCATCCAGACGGCAGATATCATAGCCGTCATGTCCCAAGGTGCTGTCATAGAAAGGGGGACACATGAGGAGCTCATGGCTAAGAGGGCTGCCTACTACAAACTAGTCACAACAGGGGCTCCGATCAGCTAAACCTGATAGATGCACATTTTCTATAGAGGGGATGCTTTATGAGGAAATGGAGTTTGTCACTAACCAAAGTGCATAAATGTGACATTTTTGAAAGAGTAACTATGGAAAAAAACATAAAAGTCCATGGGGGGGAAAGGCTATATTTGCTTGATATACTATTTATTTACTTAATGTCTCTTGAGTTTTTTTTTATATgatattatacactgagtgtacaaacattaggaacacctgctctttccatgtcatagactgaccaggtgaatccaggtgaaagctataatcctttattgatgtcacctgttaaatccacttcaatcagtgtagatgaaggggaagagtcaggttaaagaaggatttttaagcctttagacaattgagacatggattgtgaatgtcTGCCGTTAAGAGGGTGGAAGGGCATAAGGTTTTTTACACTCATTGTATATGGCCATAGAGATCAATTAGGTTTTATTTTTGCAAAACAGATGGAACCTTTAAAGTAATTAATTGAAGTATTTTGTAATCCAATGTATGTTTTTGCTCAAGAAGGTTACAATTATTGGTATGAATCATATGATCTGTCGCCGATTTAAATATTTATTTgcattcatttgtttacagaaaaatatattttattttattaacctTTAGTGTTTGATGCTTGATCTTTTGTCAACTAAAAAAATCCATGTCAGAACGGATTGTTAATTTTATTTAATTCATACAGATACATTAGTTTAAAAATGCAGTTCTTTGAAAGGAAAGCTACGTACACTGGGTAACGTAACTTGTGTCGTCCTTGAGAAAGTGCTAGTCTAATGCTGACAGGGTGTGCTGCAACCATAAACGACGGATAACGTCCGGCATTGTTTTTTTCTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2038818 lncRNA upstream 17750 15570282 ~ 15572970 (+) True lrp2a
TU2038809 lncRNA upstream 109715 15480346 ~ 15481005 (+) True G1780625
TU2038766 lncRNA upstream 144981 15444706 ~ 15445739 (+) True G1780585
TU2038765 lncRNA upstream 148550 15441928 ~ 15442170 (+) True G1780584
TU2038764 lncRNA upstream 149550 15440926 ~ 15441170 (+) True G1780583
TU2039548 lncRNA downstream 229747 15837013 ~ 15838727 (+) True G1781292
TU2039560 lncRNA downstream 252187 15859453 ~ 15860977 (+) True LOC110501488
TU2039597 lncRNA downstream 346287 15953553 ~ 15972242 (+) True G1781333
TU2039630 lncRNA downstream 441587 16048853 ~ 16049113 (+) True G1781365
TU2039701 lncRNA downstream 442528 16049794 ~ 16050057 (+) True G1781415
XM_036958840.1 mRNA upstream 17813 15503060 ~ 15572907 (+) False lrp2a
XM_036958841.1 mRNA upstream 17813 15503060 ~ 15572907 (+) False lrp2a
XM_036958842.1 mRNA upstream 17813 15503060 ~ 15572907 (+) False lrp2a
XM_036958843.1 mRNA upstream 17813 15503060 ~ 15572907 (+) False lrp2a
XM_036958844.1 mRNA upstream 17813 15503060 ~ 15572907 (+) False lrp2a
XM_021579079.2 mRNA downstream 2981 15610247 ~ 15614355 (+) False spc25
XM_021579080.2 mRNA downstream 3102 15610368 ~ 15614355 (+) True spc25
XM_036958848.1 mRNA downstream 40647 15647913 ~ 15665784 (+) False stk39
XM_021579082.2 mRNA downstream 40650 15647916 ~ 15683499 (+) False stk39
XM_021579083.2 mRNA downstream 40653 15647919 ~ 15683499 (+) True stk39
TU2038754 other upstream 156900 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 243054 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 547077 15038099 ~ 15043643 (+) True G1780353
TU2037699 other upstream 687460 14902795 ~ 14903260 (+) True G1779636
TU2037181 other upstream 1510981 14079497 ~ 14079739 (+) True G1779170
TU2039549 other downstream 232338 15839604 ~ 15848595 (+) False G1781293
TU2039550 other downstream 232338 15839604 ~ 15848595 (+) True G1781293
TU2039714 other downstream 455491 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 665123 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 1398768 17006034 ~ 17041673 (+) True G1782390

Expression Profile