RNA id: TCONS_00004881


Basic Information

Item Value
RNA id TCONS_00004881
length 858
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_002624
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10564261 ~ 10607118 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCAGATCTCCAGCATTCAGACTGTCAATACGAGCCCACACACTCGCTCAAGCTGCCAATTTAATGCTAACCTGCCAACAGACATTCACTGGAGCTCTGCAAATAGCCtttgtgaacgtgtgtgtgtggtgtttctcACAGGGCGATGCTCTGCTCACGACGTGCAGATTCAACACCGAGGACAGAAGCAAAGTTACTGTGGGTGGTTTTGGAATTATGGAGGAGATGTGCGTCAATTACGTCCATTATTACCCCCGAACGCAACTTGAGCTGTGCAAAAGCCACGTGGACACAGATTACCTGCAGAAATACTTCAGCCTCATCAACagGTTTCAGGGCCGCGAGAGCTGCAGTTGTCCTCAGACCTCTGTGGAAGAACAGTTCTCCTCAGTGTCCTGGGACAGTTTCAGTGGAGAGGTGCTGAACTCGCTCTACGTCACAGCACCATTTTCAATGCACTGCAACCAGTCCACAGCGCAGCTCTTTCCTGGTGACTGGGAGAAGCAGGAGATCCCGGTGGTGACAGCGCAGCTTCAGAGAGCCCCATACCCATGTGAAATAAACAGGAGAGTGGCTTCTAATAATGACAGCCCTACAGAGGTGCGAGCGGACAGCAGCGGCTGATCTGCACCTTTACCATCTGAAGCTCGATAACAGATCCACACAGCGGCCCGCTCATTACACTCTCCACAATTAATTACTCAATAACTGCTTTGTGTTTAGACTGTTATTGAAGACTATGTTACGATTCGCATGAGAAcactaaaaaaaactatttattcttagaaattatcatttaattgtgcaaaatatgataaaaatacaGCAAGCAGCagctactgcaaaaaaaaaccaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0042420 dopamine catabolic process biological_process
GO:0042421 norepinephrine biosynthetic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0030431 sleep biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0009060 aerobic respiration biological_process
GO:0001501 skeletal system development biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0007275 multicellular organism development biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0006589 octopamine biosynthetic process biological_process
GO:0030667 secretory granule membrane cellular_component
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0004500 dopamine beta-monooxygenase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00350 Tyrosine metabolism
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-990621-3 Predicted to enable copper ion binding activity and dopamine beta-monooxygenase activity. Acts upstream of or within sleep. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and secretory granule membrane. Is expressed in endocrine system; head; interrenal primordium; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including alcohol use disorder; attention deficit hyperactivity disorder; dopamine beta-hydroxylase deficiency; hypertension; and migraine with aura. Orthologous to human DBH (dopamine beta-hydroxylase).

Ensembl:

ensembl_id ENSDART00000139403

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006008 lncRNA downstream 233130 10327167 ~ 10331131 (-) False XLOC_002623
TCONS_00006007 lncRNA downstream 233641 10324509 ~ 10330620 (-) False XLOC_002623
TCONS_00006006 lncRNA downstream 275578 10287455 ~ 10288683 (-) True XLOC_002621
TCONS_00006004 lncRNA downstream 275595 10261345 ~ 10288666 (-) False XLOC_002621
TCONS_00006005 lncRNA downstream 285728 10273729 ~ 10278533 (-) True XLOC_002622
TCONS_00004883 lncRNA upstream 133346 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00006009 lncRNA upstream 133346 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00006010 lncRNA upstream 205502 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00004895 lncRNA upstream 753137 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006011 lncRNA upstream 1316541 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00004875 mRNA downstream 545467 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004877 mRNA downstream 546141 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004876 mRNA downstream 547913 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004874 mRNA downstream 602773 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004866 mRNA downstream 1154193 9397305 ~ 9410068 (-) True XLOC_002617
TCONS_00004884 mRNA upstream 281927 10860759 ~ 10863936 (-) False XLOC_002627
TCONS_00004885 mRNA upstream 281927 10860759 ~ 10864331 (-) True XLOC_002627
TCONS_00004886 mRNA upstream 300705 10879537 ~ 10969444 (-) False XLOC_002628
TCONS_00004887 mRNA upstream 301833 10880665 ~ 10969596 (-) True XLOC_002628
TCONS_00004888 mRNA upstream 422062 11000894 ~ 11012000 (-) True XLOC_002629
TCONS_00004879 other downstream 231834 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 234707 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 1025935 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 1422582 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 1474625 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004903 other upstream 1182548 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 2726233 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 3028195 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 3033301 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 3352737 13931569 ~ 13931696 (-) True XLOC_002648

Expression Profile

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