RNA id: XM_021579084.2


Basic Information

Item Value
RNA id XM_021579084.2
length 2602
RNA type mRNA
GC content 0.43
exon number 2
gene id b3galt1b
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15684423 ~ 15825221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGTTTCGCTTTAGGATGCTGAAGGCACCGCTCTCGCATCAGGACCAGAAGTCTGAATGGGATGGAGACGAAAAAATAGATGTAAATGGAGACGCACAAGTGTCAAGAAGAAAAACAGGACATCTGCACGGTTTCAAACCGGATTTTCATTAAAAGGCAAACAACGACATCCCATCACTTTCCTCTAAAACAATCCATTACTGACAATTAATGTCAAGCAGCACATCAGTGCAGCATTATGCTGCCTTGCTGGAAGGAACACTGCTAATGGAAAGAAAGCCTTTTAAGATTCAATACATTAAATACATATAAATGCACCAGAATGCCTTCAAAAGTCTCATGCTTGTACGTGTTGACGGTCGTTTGCTGGGCAAGTGCTCTTTGGTACTTGGGTATATCCCGGCCGACATCCTCCTATGTCAGTGGGCAGATGTCTTTGCCGATCCGGAAGACTGTGAAAACCCTTAAGAACACTACGTTCAGCAACATCCGGACGCGAACGCTGAACCCACACGCCTTCGACTTTGTCATCAACGAGCCTAAGAAATGTGAGAGCAACACGCCCTTCCTGGTCATCCTGATCAGCACCACACACAAAGAATTCGATGCCCGTCAGGCCATCCGGGAGACCTGGGGAGATGAGAGCACCTACAGCGACATCCGCATCATCACCCTCTTCCTGCTGGGCCGCAACACGGACGCCGTCCTCAACCAGATGGTGGAACAGGAGAGCCAGATCTTCCACGACATTGTGGTGGAGGACTTCATAGACTCGTATCACAACCTCACCCTCAAGACCCTGATGGGCATGCGCTGGGTGGCCACCTTCTGCTCCCAGGCCCAGTACGTCATGAAGACGGACAGTGACATTTTCGTCAACATGGACAATCTGGTCTACAAGCTTCTGAAGCCCACCACCAAGCCCAAGAGGAGGTACTTCACGGGCTACGTCATCAACGGCGGTCCCATCAGAGACATGCGCAGTAAGTGGTATATGCCCAGAGACCTGTACCCCGAGGCTAAGTACCCCCCCTTCTGCTCGGGCACAGGGTACGTGTTCTCAGTGGACGTGGCTGAGCTGATCTATAAGACCTCTCTGCACACCAGACTGCTCCACCTGGAGGACGTGTACGTGGGACTGTGTCTGAGGAAGCTGGGCATCCACCCCTATCAGAACAGTGGCTTCAATCACTGGAAAATGGCCTACAGCCTGTGTAGGTACCGTCGTGTTATCACTGTCCACCAGATTTCACCGGAAGAAATGCACCGGATCTGGAACGACATGTCCAGCAAGAAACACCTCCGATGCTAGCACCTGGGGACAACTTGGACCCTtcttctgttttgttttgtttttttacctctCAACCTGGTGTTCTAACAAAGTTGTTTTCATTTTCTGACAACATTAGTTCTCTATAGGCTACTAGTATACTTCTACTGAATCCAATGTAGCTGTTGGGTGCATGAGGCTTGTAAAGTGCATGTTCTCATTCAAACACACACTAAGATAGTGTTGTTGCCAGTCATTTTGTAATCTCTGGTCTAGAGCTGTAGACTTCAACAACTCATTTCGATGAACATTTACTCTGTACATTTACAAGTGAAACCAGAGAGGTATTACTGAAAGACAAAATGATGTATATGTCAGTGCAAGTGTCTATCTACTTTCTGCCAAGTTCTCATGCTGTTTTGGGGATGGTACTTCCTTACAGCAGGAGAAAGCCTCCCCCACACCATGTCTCATCCCTCCTACCAGGCTTATGGATGGCCAACAGTTGTAGGCTACACCATAGTAAATACACATTGAAATAGAAACTAATGCTGCAACAATGAAAACAACAATATCTATATTCTGCAAATGTAGAACAAGTTGGAATGTTAATTGTTCTTTTCTATTGTTGCGATTTAATAAGAAATGAATACATCTCTACTGGATGTACTTTATCACTATTGGTAGTGATGTTCACTATTCACTATTGTTCAAAACTACATGTGTGGGTCAAACAGATGTTATAAatgtgatccccccccccccccggatatCTTTGTTTACATATTGGTGTAAATGTAACTGCCTCTTCATCTGGGAAGAGACAGGAAAATGCTTTTTACATTTAGATGTCATTGATCATTTCTACTCAAATTATTTTCTTACAGTGTACTTGAAGTATTTCATGGTGTCGTGCTACCTGCTTCTGATAAAACTGGCTACTATTACTGTACTCTACGTAGGTCGGATTCACGACCACGACCAAGTATCAACAGACGTTACATATCATCTTGTGCACGTGGCAATTTACATAGTAACTTTTATCTAAATTCCCAAGTGAATCTATTATAATGTGTTATTTGGCATATCTTTACTGAATCACTGCTATAGAAATAATGGGAAATAATTCAATTTTCTGGAACTTGGGATAGCTGTTATGGCCCAAATGTCATTTTcaaatgtttattattatttttgaagTATTTAGTATTATAAGCTATTGTGACATTTGACTGTGAAAGTATAAAGATATATCCTGAAGGAGGTTGTTGTGATATAAAGtatgttttttttacataaaaaaatattcatacTTGAAAAGTAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039444 lncRNA downstream 6397 15672223 ~ 15678026 (-) True G1781192
TU2039383 lncRNA downstream 115889 15567929 ~ 15568534 (-) True G1781137
TU2039350 lncRNA downstream 145801 15534033 ~ 15538622 (-) True G1781106
TU2039349 lncRNA downstream 149786 15534033 ~ 15534637 (-) False G1781106
TU2039261 lncRNA downstream 296453 15387764 ~ 15387970 (-) True G1781027
TU2039741 lncRNA upstream 3278 15828499 ~ 15891725 (-) True G1781449
TU2039819 lncRNA upstream 138783 15964004 ~ 15965985 (-) True G1781526
TU2039860 lncRNA upstream 234755 16059976 ~ 16060205 (-) True G1781564
TU2039863 lncRNA upstream 240984 16066205 ~ 16066526 (-) True G1781567
TU2039866 lncRNA upstream 249305 16074526 ~ 16074811 (-) True G1781570
XM_036958847.1 mRNA downstream 38794 15623457 ~ 15645629 (-) True cers6
XM_021579081.2 mRNA downstream 38796 15623457 ~ 15645627 (-) False cers6
XM_036958846.1 mRNA downstream 65742 15614412 ~ 15618681 (-) True nostrin
XM_021579074.2 mRNA downstream 98026 15581319 ~ 15586397 (-) True dhrs9
XM_021579073.2 mRNA downstream 103464 15577071 ~ 15580959 (-) True rdh1
XM_021579085.2 mRNA upstream 11798 15837019 ~ 15859097 (-) False xirp2b
XM_036958851.1 mRNA upstream 11798 15837019 ~ 15859097 (-) False xirp2b
XM_036958852.1 mRNA upstream 11798 15837019 ~ 15859098 (-) False xirp2b
XM_036958853.1 mRNA upstream 11798 15837019 ~ 15859098 (-) False xirp2b
XM_036958854.1 mRNA upstream 11798 15837019 ~ 15859098 (-) False xirp2b
TU2039382 other downstream 115889 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 2353928 13279280 ~ 13330495 (-) True G1778224
TU2036123 other downstream 2511444 13168780 ~ 13172979 (-) False G1778140
TU2041294 other upstream 1231901 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1231901 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 2044308 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 2044907 17870128 ~ 17903951 (-) True G1783895
TU2044261 other upstream 3350346 19175567 ~ 19177740 (-) False LOC110501547

Expression Profile