RNA id: XM_036958856.1


Basic Information

Item Value
RNA id XM_036958856.1
length 4347
RNA type mRNA
GC content 0.46
exon number 5
gene id csrnp3
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15922382 ~ 15988118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcagaCAGCAGGAGCACAGGCACGCCTGACTCTCTCGCAGACATCCCACCCATGTGATCTCACAGGCGCCCTCCCTCCACTCCAGTCAGGATCCAGCCTTTCAGCCTGCAGAAGCTAATGAGTCTTTGTGTGGCTAGGGTGagtaagacagagagggggaggtagagaggaagggatagggagagttaaagagagagtgCCTGTCTTCATTTAACAATAAACATATGGTACCGGCAGTGGCAGTCAGGGCTGGGAAATGTACAggtctctctgtgcctctccctatctctccctctcagccGGCACTCAAGCCCTCAGAGTGGCAGGGTCGCAGCAAGTCAGTGGACTGAAGCAAAATGGGAGCCCTTCATTTATCCTGTGTCACCTCTTTTTGAGTGCTTCATTTTGCTCCCAAGTCTCACTGTGAGAAGGGGGTCAAAGGAGTCGGAAAACACGCCAGTGGACACAGGTGCAGTGGCGGAGACGGAGAGGAAGGCCATGAGCGGAATACTTAAGAGAAGGTTTGAGGAGGTGTCCTCCTCGCCGTGCTCCTCGTTGCGGGAGTCTGATTACGAGGTCTCCTGCAGCGAGAGCGGGGACAGCAGCGACAGTGTCAACCCCTCGGCCTCGGGTACCTTCACCCCTGACTCCATACTGAAGCGAGAGAAGCGTGTGAGGACGAGGAGGGTGCACTTTGAGAACGTGACGGTGTACTACTTCAGCCGGCGCCAGGGTTTCACCAGTGTGCCCAGTCAGGGAGGCAGTACGCTGGGCATGTCCAACAGACACAGCTGTGTCAGGCAGTTCTCCCTGGGAGAGTTTGCCCTGGAGCAGGAGAGGATCCACAGAGACATGCTCCGAGATCATCTGAAGGAGGAGAAGATCAACTCCATTAAACTCAAGCTGACTAAGAACGGTACAGTGGAGTCGGAGGAGGCCAACACGCTCACGGCTGAGGACATCTCTGACGATGACATTGATCTGGAAAACACGGAGGTGGACGAGTACTTCTTCCTCCAGCCCCTCACCACGAAGAAGCGCCGGGCTCTGCTGCGGACCTCGGGGGTGAAGAAGATTGACGTGGAGGAGAAGCACGAGCTGCGGGCCATCCGGCTGTCCAGGGAGGACTGTGGCTGCGACTGCAGAGTGTTCTGTGACCCAGAGACATGTGCGTGCAGCGTAGCAGGAATCAAATGTCAGGTGGACCGCATGTCTTTTCCCTGTGGCTGTACCAAGGAGGGGTGTAGCAACGCGGCCGGCCGGGTGGAATTTAACCCCATCCGTGTACGGACCCACTTCCTGCACACCATCATGAAGCTAGAGCTGGAGAAAAGCCGCGAGCAGCAGCAGGCCTCCCCTGCCAATGGTTACCATGGCGAAAGCAACGGCCACAGCCACGGCAACCCGCTGGTCCAGACCCAACATAGTCTGGAGTACTCTCTGACAGACCCAACACTTCAACAGTCTGCCATCATGCACCTCCAGACAGCTGACAACATGGAAGAGCCTCTAGATGATGAGGATGAGGACGatgaggagaatgaggaggatgaggaggacgaAGAGGACAACAGCAGTTTATGCAGCGGACTGTCTGACTCCAGCACTCAGAGCTTGGCAAACAGTGactctgaggaagaggaggaggatgaggaggagaagttGGAGGACTTTGAGGATGGTGTGAGCACGCCGCCTGTGTCCCACACAGAGGTAGTTCCcctgtcctctgtgttgtgttaCTCTGATGGTACCTTGCCACAGGACAACCACATTGAAAAGCACATTAATGGAAACTCTTATTTACTCAGCTCCCAAGCCGAGTATTATCAGCAGGAGAACCCCAGTGCTGTTGCCTCTGCCAACGGGACGGCCAGCCAACCCAGTGAAACTTACGGAGAGGCCTTATCATTCCCACACCCAGTTAGCACTAGCAACGGGGCCATGCCACAAGGACCATTCAACATGGCCGCCGACAAGGCAGAGCAGTACACAGACTACCCCCACCAGGCTGAGGAACAGTACACCAATCAACACTTTACCCTGACCAACGGCAGAGCAGCAACAACTGCCATGGGCTGCTGCACAACTGACCTGGAAAACAACATGGTCCAATCTAAAGGAACATTCCCTGAGCAGCCTGGGGGCATTAGCCAGATGGagttccacaacaactacctgaaCAATAAGAGCTCCCAGGAAGGCTACGGTAGTACTGGGAAGTGTTTTGTAGCAGAGCAGCCAAAGGAAGTGTCTAGTGCTAATGATTTGTCTGAAGGGCCTTCTCTAGCAGACAGTACAAAGACACCTGCATTAGCAGAGAATCTCCCCCAGGGCGCACCAGTTTAGTTGGCCTAGCTTACCTGTCTGTAGACTTCATGTTGTGTCTTTTCTTAATGAACGACCCACTGGGCACAGTTCaatgtcaactaacgtgaattcaacgtgaaatcaacaacaaatgttACCGTGTcactggatttaggttaaaagctAGGTGAAAGAAAAGACTAAATGCCCTTACATTGATtattttttgcaaatccaatcagttttcgacattgattcaatgtcatcgcATAGATTTttgggttgaaatgacgtggaaacaacattgattcaaccagtttttggcCCGTGGGAAGGCTGACCAAGTGTTGAAGATCTTTATGGCCTTTAATGGGAACTAAACTTTCCAAGTAATTCGCGAGACATTACTTAGCTACAGGTTCCATGATGAGAAACATTTCTAATGAACCCGCTGATTTCTAGTATTCTAAAGTGCAAGATGGAATCAGTCAACAAAAACTGAACGCTATAAGCCTGTGCATTGTATCTCGTAATTTTAAAGGTAAAGTTTTAAGCATTATATTGTGAGTGGGACTTTTCTATGTCTGTgtcaaatgtgcaaaaaaaatatTGTCACAGTTTATTTATTGGTTCTGAAGTATGTGTATACTTATGTTTTGATAACTATAAATGCATGTTCTTTTGGGTCTTTCAATGGAATTTATGAGAAATTGACCATGGTCAATTTGGGTTGATAAAATATGTCTCAATGTACTGTACAAACCTTATTATTGTGTTGTCACTTGTAAATCCACGCTTTTATATGGTCTGGAAAAGCTTGAAACAGACTACCActtgtatgtatttattttgaaTTATAATGCCAAGAGCATCATTTCATTGGAAACATTCAAGTGTTTAGACTACGAATGTAGTACTTTGACAGCTCTCAAAGACCACATACAGCTATCAAATATATAGGAACAACAGGACAATAATATGATCAGTAAATCATATTTTATGGGGCTTAATTTAAAAAGAAATGTCATAATAAAAAACACAAACTGGGGACAACATAGGTATTGCGGAGTTGGACAGGGAAATGATTTCAAGTACATATTTACACAAAAGTTCCATTCTCTTATGACAATTGACAGTAAATACCTGAAGAGATTGGTTGTACAGACGAGAACGTTATCGTGTGACACAATTATTGAAGTGTGAAGAGCAATAATAAGAGGGCATTTCGAaggttttaatgaaagtttgaatgaAAGCCATGTCATACTCTTGAGAGCCACATTCAGGCATTTGAGGTCGGACAATCAAGCAAGCCTATGATTCATATCAGCGCCAAGTTAGAGAATGACTGATCAGCCTGGGAGAAAAGGCCATTGAACGTAAGGCCATTGAACGGAATGCTCCAGATTTGTATTGCTACAACTGTATTGAAACGTTAGGGACAGCCTTTACAATGAAATACCAACATTCCCTCTCCATAAAAGGAGTGGGCAGCCCTGCATGTATCCCTGTCTAAGTCTGCACCGTGTCTCTATTCAACCAACACTACTTGATTTGTGATTCTGCACCTGACTGAAACACAATATGTTACCTCACCTCATTGGCAAACAAAGTGTATCCAGCTGTCATCCAATCAGTGCTACTGTATGGACTGTACAGTATCAGTGCCAAAGCATTTAAGGGAAGGCAAGATACAGCAACATTGCATCCAATTGAGTAATTCTGCTGTGTTTATGATTTTCAGTATTTATTATGAATGATGTATTTATTGTGCTTTACTGAACTGTCTGTATTGGATAAAAACATGTTTCTGTCTAAAATGTTGCTCGTTTCATGACGGTTGTGAGTCGTACAGCTCCATGTGCCTGATTTCCTTATATCGCTTACTATAATGTGAAACAGAATACTTTTTGTATGGAATGGTATAAATGTTTCAATGTGTTTTGGTTTCTTAACGTTAGATAAAGCCAAAATGTTATGCAATTTTTTTGTTGCGTTTTTGCTTTAACAATACATGACCtttaaataaaatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039597 lncRNA upstream 4333 15953553 ~ 15972242 (+) True G1781333
TU2039560 lncRNA upstream 115598 15859453 ~ 15860977 (+) True LOC110501488
TU2039548 lncRNA upstream 137848 15837013 ~ 15838727 (+) True G1781292
TU2038818 lncRNA upstream 403605 15570282 ~ 15572970 (+) True lrp2a
TU2038809 lncRNA upstream 495570 15480346 ~ 15481005 (+) True G1780625
TU2039630 lncRNA downstream 60735 16048853 ~ 16049113 (+) True G1781365
TU2039701 lncRNA downstream 61676 16049794 ~ 16050057 (+) True G1781415
TU2039702 lncRNA downstream 61945 16050063 ~ 16050759 (+) True G1781416
TU2039704 lncRNA downstream 64966 16053084 ~ 16053332 (+) True G1781417
TU2039706 lncRNA downstream 66828 16054946 ~ 16055968 (+) True G1781419
XR_002470215.2 mRNA upstream 115531 15859166 ~ 15861044 (+) False LOC110501488
XM_021579082.2 mRNA upstream 293076 15647916 ~ 15683499 (+) False stk39
XM_021579083.2 mRNA upstream 293076 15647919 ~ 15683499 (+) True stk39
XM_036958848.1 mRNA upstream 310791 15647913 ~ 15665784 (+) False stk39
XM_021579080.2 mRNA upstream 362220 15610368 ~ 15614355 (+) True spc25
XM_036958865.1 mRNA downstream 130068 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA downstream 130189 16118307 ~ 16151990 (+) False LOC110501495
XM_036958867.1 mRNA downstream 140009 16128127 ~ 16151990 (+) False LOC110501495
XM_036958866.1 mRNA downstream 146016 16134134 ~ 16151990 (+) True LOC110501495
XM_021579097.2 mRNA downstream 164121 16152239 ~ 16217207 (+) False LOC110501496
TU2039549 other upstream 127980 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 127980 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 542755 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 628909 15291362 ~ 15347666 (+) True G1780491
TU2038500 other upstream 932932 15038099 ~ 15043643 (+) True G1780353
TU2039714 other downstream 74639 16062757 ~ 16063401 (+) True G1781423
TU2040116 other downstream 284271 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 1017916 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1307835 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1753639 17741757 ~ 17742435 (+) True G1783622

Expression Profile