RNA id: XM_036958860.1


Basic Information

Item Value
RNA id XM_036958860.1
length 2803
RNA type mRNA
GC content 0.49
exon number 11
gene id galnt3
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15990139 ~ 16000472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCTACCTGAAAGGAGCGCACCTGGATCCAACGAGACGGAAGTAGTTTGCAAAGATTGAGAAACGCTgcacaactgtatttttttggggggcaaCAATTACTCTGGAATTCCACGTTATTTCGAAGATGATTTTTATTTAGCGATATGCTCGACAAAACTTGATGGACTTTTAAATCAATCATTTGGAGTCCATTTCCCATACTTTTTATGTAACGTCCCGGTTACCTCCTCTGGTGGCGCAACTGACTGGTAGGTGAAGTACTGTCTCAAAGCTATCTACCCCACACATCTCCAGAAGAATGAGTGGTCTCCGCAGAGTTCTCAGAAGGCGATTACACCCCTTAAAACTGGTGATAGTGGCCCTTATTTTTGTCACATTTCTCTTCCTAATACAACGTGAGGTAGTAAGCCAAAGTCCCTCCCTAGAAGAGCCCTGGCTGAAGGAGATGGCTGTCAAACGGGATGCCATGCTGGGCATGGTGATGGGTGCTGTCAATAACTTTAGGGACGCCATGCCAAAAATGCAGATTAAAGCCCCAGTGcgtcagcatgacaatgcaggGGACTTCTCCTGTTTGCCAGGGACCTACACGGCTGCTGAGTTGAGGCCAGCCCTGGAGCGTCCACCTCAGGACCCCAACAGCCCCGGGGCCTCTGGGAAGCCCTTTCACACAGATAAACTGAGCCCTGCTGAACAGAAGGAGAAGGACCGGGGAGAGGAGAAACACTGTTTTAACCTCTACGCCAGTGACCGCATTTCTCTCAGCCGTGACCTGGGTCCTGATACCAGACCACCAGAATGTATCGAGCAAACGTTCAAGCGCTGTCCCCCTTTGCTGACCACCAGCGTGATCATTGTGTTTCACAATGAAGGCTGGACTACTCTGCTGAGGACGGTGTACAGCGTCCTCCACACCTCCCCTGCCATCTTCCTCAAGGAGATCATCCTGGTGGACGATGCCAGTGTGGACGACGCCTTGAAAGAGGAGTTGGATGAATATTTGAAGCGGCTGCACATCGTGCATGTGGTGCGGCAGCGGGAGAGAAAGGGCCTGATCACCGCTCGGCTACTGGGAGCCTCGGTGGCCACCGGAGACATCCTCACCTTCCTCGACGCTCACTGTGAATGCTTCAGTGGCTGGCTTGAGCCTCTACTGGCCAGGATAGCAGAGAACTACACTGCAGTAGTGAGTCCTGACATCACTACCATTGACCTCAACACTTTTGAGTTTATGAAGCCCTCGCCGTACGGGCAGAACCACAACCGTGGTAACTTCGACTGGGGCCTGTCCTTCGGCTGGGAGAGTCTACCGGACCACGAGAAACAACGGAGGAAGGATGAGACCTATCCTATTAAGACACCGACTTTTGCTGGGGGACTCTTCTCTATCTCCAAGGACTACTTCTATCTCATCGGAAGCTATGATGAACAAATGGAAATCTGGGGCGGCGAGAATATTGAAATGTCTTTCAGAgtgtgGCAGTGTGGAGGTCAGCTAGAAATCATCCCTTGCTCCATCGTGGGTCACGTGTTCCGCACCAAGAGCCCCCACACCTTCCCCAAGGGCACCCAGGTGATCGCACGCAACCAGGTGCGGCTGGCCGAGGTCTGGATGGACGACTACAAGGAAATCTTCTACCGGCGCAACCAGCAAGCCGCCCAGTTGGCCAAAGACAGGGCCTTCGGAGACGTCGGGCGTCGTGTGGACCTCCGGGAGCGGCTGCAGTGCAAGAGCTTCTCCTGGTATTTGAAAAATGTGTATCCAGAGGTCTTCATGCCTgatctcaacccgctccactttGGCTCGGTGAAAAATGTAGGTAAAGACTCGTGTCTGGATGCAGGGGAGAACAACGAGGGAGGGAAACCGCTGATCTTGTATCCATGCCACGGCCTCGGAGGAAACCAGTATTTTGAGTACTCGACCCATCATGAGATCCGGCACAACATTCAGAAGGAGTTGTGTTTGCATGGGACGGATGGAGCcgtgaagctggaagactgccAGTATAAAGGCCGCAATACGTTTGTAGGAGCAGAACAGAAGTGGGAGTTAAGGGAGAACCAGTTATTCTACATCCCAGGATGGAACCTGTGTCTGAGTGCTCGTCATGAGCACCCCTCGTTGGTGGCCTGTAACCCCTCAGACAGATACCAGCTGTGGCTCTACGTCTGACTACAGGACACACATGGTGGACGATGTGTGCCTTGGTATCCTAGGACCATTAGAACAAGTAGCAATTGGCGTACATTTTTGTTACGTTTTATTATCGAAgttgaatttgtatttatttttatacgTAGAAGAACTGCTGCTGGAAAGTTTGCGATTTTTGAGGAGAACGTGACCTCGGGAAGGAAGCGTTCAAACTGATACTAAAGACTGTTTGTTTtactcctttaaaaaaaaaaaaaatcatgattTGGGTAAAGGAATTGTTTTTCTTGTCTTACACGCCAAATGCTCTCTGTAGATTGACGGAGGTAGCTAGGACTGTGGAAAGACTTTGGATGGATACTGAATGAAGAGAGATTTCTTTGAAGAATACGTCTTTTTTTTATATAGTGTGTACTTCGGCGGGAAATCAACATTACATTTTATGTAATTACCAAGGTTTGTTCTTTATTGCCCACACTGAATAATTTATTAATATAAATGTGAAAACCAACAACAATGGACTGTCAAATAATGCAGTAGTGCACTTGCCTCTTGCACAAACTGAATAACTTCGATGTTATACACCAAAGACtaatcaagtttttttttttttttttttctattaaagacatgctccagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039819 lncRNA downstream 24154 15964004 ~ 15965985 (-) True G1781526
TU2039741 lncRNA downstream 98414 15828499 ~ 15891725 (-) True G1781449
TU2039514 lncRNA downstream 193483 15785021 ~ 15796656 (-) True G1781260
TU2039456 lncRNA downstream 299972 15689789 ~ 15690167 (-) True G1781203
TU2039444 lncRNA downstream 312113 15672223 ~ 15678026 (-) True G1781192
TU2039860 lncRNA upstream 60563 16059976 ~ 16060205 (-) True G1781564
TU2039863 lncRNA upstream 66792 16066205 ~ 16066526 (-) True G1781567
TU2039866 lncRNA upstream 75113 16074526 ~ 16074811 (-) True G1781570
TU2039903 lncRNA upstream 105776 16105189 ~ 16105649 (-) True G1781607
TU2040018 lncRNA upstream 149294 16148707 ~ 16151986 (-) True G1781715
XM_021579090.2 mRNA downstream 32640 15946465 ~ 15957499 (-) True LOC110501489
XM_036958850.1 mRNA downstream 120094 15837019 ~ 15870045 (-) True xirp2b
XM_036958852.1 mRNA downstream 131041 15837019 ~ 15859098 (-) False xirp2b
XM_021579091.2 mRNA upstream 3134 16002547 ~ 16020650 (-) False ttc21b
XM_036958862.1 mRNA upstream 3134 16002547 ~ 16021067 (-) True ttc21b
XM_036958863.1 mRNA upstream 46110 16045523 ~ 16077030 (-) False LOC110501493
XM_021579092.2 mRNA upstream 46110 16045523 ~ 16088614 (-) True LOC110501493
XM_021579108.2 mRNA upstream 541842 16541255 ~ 16578678 (-) False LOC110501500
TU2039451 other downstream 164925 15685856 ~ 15825214 (-) True b3galt1b
TU2039382 other downstream 421605 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 2659644 13279280 ~ 13330495 (-) True G1778224
TU2036124 other downstream 2817160 13168780 ~ 13172979 (-) False G1778140
TU2041294 other upstream 1057709 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1057709 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 1870116 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 1870715 17870128 ~ 17903951 (-) True G1783895
TU2044261 other upstream 3176154 19175567 ~ 19177740 (-) False LOC110501547

Expression Profile