RNA id: XM_036958862.1


Basic Information

Item Value
RNA id XM_036958862.1
length 4522
RNA type mRNA
GC content 0.49
exon number 30
gene id ttc21b
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16002547 ~ 16021067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGTCTATCTTCattactgtactgtctttaatgAAACTGTGGAAGGACCGTCTTCCGTTTGCCAACGAACGAAATTACACTACTCGACCactggtcgtcactagttaccacagccacaaagtcaaagaccccgcctatttctacaatttatcttcttcaAATTGTTGTTTTCATGAATTGTTATAGACATTTTTACTTTGTGGTAACTAGTGTAAACCTCGACCATTTAGAATCGGTTTAAGGGTCACAGATTGAAGATGGGAACCTAGGTCACTTTTATCCAAACGAGAAAACACCACAAAGTAGCTACAAGCCTCTTCTCACAGCCTTTGTGCCAAAGGGCCACAAGCGCGGCATGCGGGTGGGTTTGAGGTGAAACATTATGGCAGAAGTGGAGGACGAAGAGTCGATGCTGGCCTTGATCAACTACTATTGCCACGAGAAGTATTTCAATCATGTATTAAATGCTGCAGCTGTGGCACAGAGGAAATTCAGCAATGATCCAATCTTCAGCTTTTTCCATGCCTACGGCACCCTGATGCAAGATCAAATTCAGGAAGCCATCCATGAGTTTGAGACAATAAAAGACAGAAGAGATATGTCCCTCTGTACATTCATGGCTCTTGTTTTTGCTGAAAAGAAAAGGCCAAACCCAGATCGAGATGTCATTCAGGAACTGGATGCCAAGGTGAAAGAGGACCGTAAAAGTGCAACACCTAAGGGTCTCTACTATGCTGGGATGTTCCTCTGGCTTCTGGGACGAAATGACAAAGCAAGGGAATACATAGAGAGGATGATCAAAGTCTCTAATAATGGTTCCCGAGAAGGGATTATCCTAAAAGGCTGGATAGATCTGACCTCTGGTAAGGATGCATATGCCAAGAAGGCTGGGAAATACTTTGACGAAGGCCTGAAAGAGAAAGCAGATGTTTTTGCTCTGATGGGAAAGGCACATTACTATGAGTATCGGCATAATTATTCTGGAGCATTGGAGACAGTCAACCAAGTGATTGTTAGTTTCCCTGGGTTCCTTCCTGCCTTTATCAAGAAGATGAAGCTTCTATTGACCCTGCAGGACTGGGAGCAAACTGTAGATGCAGCACAGAGGCTCTTGCAGAAGGATAAAAACAACCTAGAAGCCCTGAGAATGCTCGCTCTTCACTCCTTATGCAGAGAGGGGGACATCACAGAGTCATTAAACATGCTCTCAAGTCTCGTCAGCAACTTGGACGTCCAAGAGCCTCACAGCCCAGACCTTTTCTACAGGATGTCCTTGGCTTTCACACGGGTGTGTGGAAGAAATGAGAAAGTGATTCAGCAGACTCACATCATGGTGGACAGAGCCTTCTCCCAAGCCCAAGGGGATTCTGATCTGGCCACAGAGCTGGGCTACCAGTTGGTTCTGCAGGGAAGAATCAAAGAGGCTATGAAGTGGTACAAGACTGCCATGACTCTGGATGAAACAAGTGTCTCAGCTTTGACAGGTATTATCAGGTGCCAGCTGATCGAGGGAAACTTGGAGGATGCAGAGCAACAGCTGGAGTTTCTCACAGAGATCCAACAGTCTATTGGGAAATCAGGGGAGCTGCTGTACCTGCGCGCCATGCTGGCTGTGAAGAAACGCAGGTCACAGGATGAGGTCACCAACCTGCTGAATGATGCTGTGGACACTCACTTCTCCACACTGCAGGGCCTGCCGCTGGGGGTGGACTACTTTGAGAAGCTCAACCCTGACTTCCTGCTGGAGATCGTCAAGGAGTACATAGCACTCTGTCCTGCTAAGCCTCCAGCCCAGGGCCAGCCTCCTGCCCCTCAGCTCCAACACTGTGCCTCTGTGTTGGACACTGTGGTCAAGATAGTACCTGGACTCCTACAAGGTGTCTTCCTATTGGCCAAAGTTAGGTTTCAGTCTGGTGACATTGACTCTGCTCAGAGCAGCCTCCAACACTGCCTGGACCAGTGTCCCTCCCATGCTGAGGCCCACCTGCTCATGGCACAGATCCACCTCTTACAAGGCAACTACAAGCTCTCCTCCCAGTCTCTGGAGCTTTGCCTCAGTCACAACTTTGCGGTCCGAGAGCACCCTGTGTATCACCTTATAAAGGCCCAGGCCCAGAAGAAGATGGGAGAGCTCCAAGAGGCCATCCAGACTCTGCAGATGGCCATGATCCTGCCGGGGGTCCGCAGGGCCGGTGCCTCAGCCAAATCCAAGAACAAGAAGGTGGAGCTGAGCTCTGCTGACTGTGTGTCCGTGTTCCTTGAACTCGCCGAGGCCCTCTGGCTCAACGGAGAACAGCACGAAGCCGCCAAAGTGATGCAAGACGCCATCAACGAGTTCTCGGGTACTCCTGAGGAGCTGCGTGTCACCATCGCCAATGCTGACCTGGCTCTGCTGCGTGGCGACACCGAGCTTGCCCTGAGCATGCTCAGAAACATCACCCCTGAGCAGCCCTACTATATCCAGGCCAAGGAGAAGATGGCCGACATATATCTGACTCACAGGAAAGAGAAGCGCCTTTATGCCAGTTGTTACAGAGAATTAGTAGAGAAGCTGCCGAGTCCTCATACATATCTTTTACTTGGGGATGCTTATGTGAATATCCAAAAGCCAGAGAAGGCCATTGAGATCTACGAACAGGCTCTGAAGAAAAACCCCAAAGATGGAGCTCTGGCCAGCAAGATTGGGAAAGCTCTTGTCAAGACTCACAATTACGTCAAGGCAATCAATTACTATGAAGCTGCTCTGAAGACTGAGCAGCAGAACTTCCTGCGATATGACCTGGCTGAACTGCTAATGAAGATGAGACAGTACGAGAGGTGCGAGAAAGTTTTACAAGAGGCTCTCGCCCATGACCCAGTAAATGAGCTGCCGTTGCTAACCGATGATTGTCGCTATCTGGTCCTGTTGGCCAAGATCCAAGGCAAGGTTGACAAAAACGAGGATGCTTTACTTTCCTTGCAGCGAGCCCGGGATGTGCAGGCCAAGGTGTTGAAGCGTGTGCAGTTGGAGCAGCCAGACGCTGTCTCCATGCAGAAGCAGCTCGCTGCAGAGATCTGTGGCGAGATCGCTAAACACTACACGAGTCTTAGAGGCTATGAGAGAGCAGTGAAATTCTACAAAGAAGCTCTTGTCTATTGTGAGAGTGATGGCAAGGTGATGCTGGAGCTGGCGCGGTTGTACCTCACTTTAGATGATGTGGATGGCTGCCAACAGCAATGCAGTGTCCTTCTGAAGAGTGACCAGGTCAATGAAGATGCAACACTGATGATGGCTGACCTGATGTTCAGGAAGCAGGACTATGAGCAAGCCGTTTTCCACTTTCAGCAGCTACTGGAGCGCAAACCAGACAACTACCCAACGCTGTCACGTCTAATCGACCTGCTGAGGAGAGCTGGGAAGTTAGAGGAAGTTCCCAGGTTTCTGGAGATGGCTGAAAAACATTCCTCCAGGGCAAAGTTTGACCCTGGGTTTAACTACTGCAAAGGACTTTATCTGTGGTACACAGGTGAACCCAATGATGGGTTGCGACACTTCAACAAGGCACGGAAAGACAACGACTGGGGTCAGAATGCTGTGTACAACATGATTGAGATCTGTCTTAACCCAGACAATGACACCATGGGAGGAGAAGTCTTTGAGAACCTAGATGGTGACATGGGGAACTCTACTGAGAAGCAGGAGTCAGAGCAGCTCGCCGTGAGAACAGCAGAGAAGCTCCTGAAGGAGTTAAAGCCCCAGACAGCCGGTGGACACGTCCAACTACGGATCCTAGAGAACTACTGCTTTCTGGCCACCAAGCAGAAAGCCAACGTCGAGAAAGCCCTGAATGTTTTCACAGAGATTGCAAATAATGAGAAGGACCATGTGCCTGCACTGCTAGCCATGGCGACAGCCTACATGATTCTCAAACAAACCCCTCGAGCCAGGAACCAGCTCAAACGCGTAGCTAAGATGAACTGGAGCATTGTTGACGCTGACGAGTTTGAGAAGAGCTGGCTGCTCCTGGCCGACATCTACATCCAGTCAGGGAAATATGACATGGCCGGGGACCTCTTGAAGAGGTGCCTTCGTCATAATAAGTCATGTTGTAAAGCTTATGAATACATGGGCTACATTATGGAGAAGGAGCAGGCATTCCGAGATGCAGCGCTGAACTATGAAATGGCTTGGAAATATGGCAATCAAACGAACCCCACTATAGGATACAAGCTTGCATTCAACTACCTGAAAGCAAAGAGGCATGTTGATGCCATAGATGTCTGTCATAAGGTTTTGGATGCTCACCCCAATTATCCAAAGATGAGGAAGGACATCTTGGACAAAGCTCGGGCAGCTTTGCGGTCTTAACATAAATGTTTTAgcgagagagtgcagtgtgtgggTGTATTATTGCTCAATCTTTTTTGATGTGTTTTGTTAACAAGCATTATTACTTGGGTAAGTATTTGGATGTAATTATAAATGGAATtttggagggatgagagagtgcTTTTTATAAACGTGATTACAATACAAAACA

Function

GO: NA

KEGG:

id description
K19673 TTC21B, IFT139B; tetratricopeptide repeat protein 21B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039819 lncRNA downstream 36562 15964004 ~ 15965985 (-) True G1781526
TU2039741 lncRNA downstream 110822 15828499 ~ 15891725 (-) True G1781449
TU2039514 lncRNA downstream 205891 15785021 ~ 15796656 (-) True G1781260
TU2039456 lncRNA downstream 312380 15689789 ~ 15690167 (-) True G1781203
TU2039444 lncRNA downstream 324521 15672223 ~ 15678026 (-) True G1781192
TU2039860 lncRNA upstream 38909 16059976 ~ 16060205 (-) True G1781564
TU2039863 lncRNA upstream 45138 16066205 ~ 16066526 (-) True G1781567
TU2039866 lncRNA upstream 53459 16074526 ~ 16074811 (-) True G1781570
TU2039903 lncRNA upstream 84122 16105189 ~ 16105649 (-) True G1781607
TU2040018 lncRNA upstream 127640 16148707 ~ 16151986 (-) True G1781715
XM_036958861.1 mRNA downstream 2075 15990139 ~ 16000472 (-) True galnt3
XM_036958860.1 mRNA downstream 3134 15990139 ~ 15999413 (-) False galnt3
XM_021579090.2 mRNA downstream 45048 15946465 ~ 15957499 (-) True LOC110501489
XM_036958850.1 mRNA downstream 132502 15837019 ~ 15870045 (-) True xirp2b
XM_036958855.1 mRNA downstream 143449 15837019 ~ 15859098 (-) False xirp2b
XM_036958863.1 mRNA upstream 24456 16045523 ~ 16077030 (-) False LOC110501493
XM_021579092.2 mRNA upstream 24456 16045523 ~ 16088614 (-) True LOC110501493
XM_021579108.2 mRNA upstream 520188 16541255 ~ 16578678 (-) False LOC110501500
XM_021579105.2 mRNA upstream 520188 16541255 ~ 16578680 (-) False LOC110501500
XM_021579107.2 mRNA upstream 520188 16541255 ~ 16578681 (-) False LOC110501500
TU2039451 other downstream 177333 15685856 ~ 15825214 (-) True b3galt1b
TU2039382 other downstream 434013 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 2672052 13279280 ~ 13330495 (-) True G1778224
TU2036124 other downstream 2829568 13168780 ~ 13172979 (-) False G1778140
TU2041294 other upstream 1036055 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 1036055 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 1848462 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 1849061 17870128 ~ 17903951 (-) True G1783895
TU2044261 other upstream 3154500 19175567 ~ 19177740 (-) False LOC110501547

Expression Profile