RNA id: XM_021579097.2


Basic Information

Item Value
RNA id XM_021579097.2
length 3192
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110501496
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16152239 ~ 16217207 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAAACACCTGTCTAGGGAGAACGCGTGGACTAGATGAGCAAACACCTCAAAGGCAGGGATGAAGACGAGAGAGGAAGCGATATGCAGTAACAGTGCCATTTCAGCCAGCGGCAGgaaaaTTGAAGAGGGAGAGAAGTCTCTGCTGGCTGCTCCTGTTCCAAGCCTTTTCCCAGAACTCATTCCCTCAACCGTCTCATCCCTTGTCTCCGATTGTTTATTACCCTCGACCAAAAGTGGCGCAACTCAGGTAATCAAAGTGTATAATGAGGACAATACAAGTCGAACAGTAGAGGTTCCCACTGACATCACAGCCCGGGACATATGCCAGCTGTTTGTCCTGAAGAATCACTGCATTGACGACCACAGCTGGACTCTGTTTGAGCATCTCACCCATCTAAGCATAGAAAGAATCATAGAAGACCATGAATCTGTTATGGAGGTGCTGTCTGGTTGGGCCATGGACACAGACAGTCGGTTATATTTCCGGAAGAACTATGCCAAATATGAATTCTTCAATAAACCGCTGGATTTTTTCCCAGATCACATGGTGTCCATATCAAGTGAAACCAACGGGATGATGAACCACTCTCAGCTAATACAGACTTTTCTCAACTCGAGCACTTGTCCAGAGATCCATGGGCACCTCCATGCCAAAGAACAAGGCAGGAAGTCTTGGAAGAAGTTCTACTTTGTCTTGAGGAGGTCAGGTCTCTACTTCTCCAACAAGGGGACATCAAAGGAACCAAGACATCTCCAGTTCATCGCCGAGTTCAGTGACGGCGACGTCTACACGTTACTATCAGCGAGAAAGATACACGGAGCGCCTACGGACTATGGCTTCTGTGTCAAGTCTACCAAGCGTGGCTCTCCACGGGACCTCAAGCTGTTATGTGCAGATGACGAGCAAACCAGAACCTGCTGGGTCACTGCCATGCGCCTCTTTAAGTATGGGATGCAGCTGTACCAAAACTTCATTCAACCACACCAGAAACAGAAAACACCTATGAGAAGTATCTCCGAGAACTCCTTGGTGGCCATGGACTTCTCAGGACACAAGAGCCGGGTGATCGAGAACCCCTCGGAGGCGCTGTCCGTAGCCGTGGAGGAGGGGCTCTCATGGAGGaGGAAAAGCTGCCACCGTCTGAGCTCCCATGGAAGCCCGTCCACCTCTCAGAGTCCCATGTCAAACATAGCTCTCCATATGGCCCAGCCCTGGTTCCACAGCAAACTGTCCAGAGATGAGGCACACCGCTTAATCACTCAACAGGGTCTGATTGATGGAGTATTTCTTCTAAGGGACAGCCAAAGCAACCCCAATACATTTGTACTGTCACTGTGTCACACACAGAGAATCAAACACTTTCAGATCTTACTGGTGGATGAAGAGGGGGAATTGTTCTACAGCCTAGATGACGGTCACACGCGCTTCACTGATCTGATCCAGCTAGTGGAGTTCTACCAGCTCAACCGAGGAGTGCTGCCCTGCAAACTCAAACACCACTGTGCCAGGATCACCCTCTGAGGGGGAAGGGGTCTCCAAGGGCCCCATACATACCTTTAATCACAGCCAATATCCCTCTGGAGAACCAACCACCCAcgcatccctccttccctcccatgCCATGGCAAAGGAGACACCGAGAACACCTCCAGACATAAACAAACTGAAACCACTTATCACCTTCTAGAATCCATTCTCTTGGAGAAAACCGTGGTGATCCAATATTTTGTAATGACTTGTGTTTTTCACTAAACTATGAAATGGGTGTTATGGTGAAAAAAATAGATGACGACATTGTGTCATACGTGACCATAGGTGTTGAGAAACATGGCGTTGGAAAAAAGTGAATCTACTGTAGAATTGATGTGACTGAGAGGGCTCTATTGCGAGCCCATTGGTTGGCCCTGTATGTTAGCCCAGGTGTGGTGACGAATCACAAACACCACGGGGACTGTGTCGAGTCCAAACTTCcgttaatatactgtatacacaatgCAAGCATGATCCACATTGTATCGGCTCACTTTACTACACTCTATGGGAATAAACATTTACTGTAGCCAACGGTTGAAACCGTAGAGCGAGAGCTGATATTTGACAGTGTGTGTTCACACCTCGAGAGTAGAATGACCAGTGTGGTATAGCCATCAATGTGCATTATCGGCACAGTTAAGCTGAACCTGGTAATTAGTCAGTAGAAGGGGATCACTGCTACCAGACAAGACGAGGCATGATGGGAAATGTAGTATGTTGACtctagaggaggctggtgggaagagcTATAGGATGAAGGGCTCATTTGTAATTGCTGGAATGGATTAAATGAAACTGGGGGtgaacatgtggtttccataagtttgataccgttccattaattccattccagccgttACAATAAGCCCatcctcctacagctcctcccACTAGCCTCCTCTGGTAGGCTACAGTGGTCCTCTGGCCTTGGTCATCTCCTGGGTAAGCGAAGCTGTTTTATCACATCTCAAGGAATTCCGGTgtatttctaaaaaataaatgtaaaagactgtttattttctattttcgAGGTATGAGTAGCCGAGGAGAATTCAAAGTGGTTTCATGTTGTTTAAGCTGGACATTGACCGCTGTAGGGAGAGCATGCACAACAACATGCTTTTACTAGCCTGCACTGTACATTTATTGGCAATGTATTGGTTGCATTTGAATCAATAAACGGAAGGCTGCTCCCTTTTTGTTCTCGCAAGAGCAGCAGAATATATTTTTGACTGATTTGAGATTCAAAGATAGAAATACAGTATAATATTGTGATTTTTTTATTGATCAAAATCTGAATTGTTGTACAttgaaatgaatgttttatagtatttttttttctttctccaaGATTCAGGTAAAGCATGTGCAGCACCTGAAATGGTTACATTTTGACGTAAAGAACCATGACTTATATCATGTACTGTTTTGTTGCTTCATTTTGGAAACGGTACTGTAATCATGCAGCAATTTATACAGACAGGTTTCACCAGTACAATATAATAAAACAAGGTGTAACTTACTTTGATACAAGTGACAAGCAAGACATGTTAACAATGCACTTCACACAATATTTCGTTTTAACATAAAGAACAGTGCATTTAAACAGTAATGATGTCATGGACTGCAATGTTTTATAAAGGAAACAAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2039909 lncRNA upstream 40533 16109574 ~ 16111706 (+) True G1781613
TU2039735 lncRNA upstream 67203 16084796 ~ 16085036 (+) True G1781443
TU2039729 lncRNA upstream 72795 16079147 ~ 16079444 (+) True G1781438
TU2039723 lncRNA upstream 78622 16073373 ~ 16073617 (+) True G1781432
TU2039722 lncRNA upstream 79386 16072452 ~ 16072853 (+) True G1781431
TU2040107 lncRNA downstream 49017 16266224 ~ 16266438 (+) True G1781804
TU2040108 lncRNA downstream 49433 16266640 ~ 16266865 (+) True G1781805
TU2040119 lncRNA downstream 56091 16273298 ~ 16273551 (+) True G1781816
TU2040121 lncRNA downstream 57625 16274832 ~ 16275273 (+) True G1781818
TU2040298 lncRNA downstream 168739 16385946 ~ 16386498 (+) True G1781986
XM_036958865.1 mRNA upstream 249 16118186 ~ 16151990 (+) False LOC110501495
XM_036958864.1 mRNA upstream 249 16118307 ~ 16151990 (+) False LOC110501495
XM_036958867.1 mRNA upstream 249 16128127 ~ 16151990 (+) False LOC110501495
XM_036958866.1 mRNA upstream 249 16134134 ~ 16151990 (+) True LOC110501495
XM_036958857.1 mRNA upstream 164121 15922382 ~ 15988118 (+) False csrnp3
XM_021579103.2 mRNA downstream 111571 16328778 ~ 16338520 (+) True LOC110501497
XM_036958873.1 mRNA downstream 226829 16444036 ~ 16494451 (+) False LOC110502057
XM_036958869.1 mRNA downstream 226831 16444038 ~ 16494451 (+) False LOC110502057
XM_036958870.1 mRNA downstream 226831 16444038 ~ 16494451 (+) False LOC110502057
XM_036958872.1 mRNA downstream 226831 16444038 ~ 16494451 (+) False LOC110502057
TU2039714 other upstream 88838 16062757 ~ 16063401 (+) True G1781423
TU2039549 other upstream 303644 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 303644 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 718419 15424711 ~ 15433820 (+) True G1780575
TU2038660 other upstream 804573 15291362 ~ 15347666 (+) True G1780491
TU2040116 other downstream 55182 16272389 ~ 16273110 (+) True G1781813
TU2040736 other downstream 788827 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 1078746 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1524550 17741757 ~ 17742435 (+) True G1783622
TU2042125 other downstream 1692693 17909900 ~ 17911226 (+) True G1783691

Expression Profile