RNA id: NM_001195179.1


Basic Information

Item Value
RNA id NM_001195179.1
length 3117
RNA type mRNA
GC content 0.47
exon number 16
gene id ifih1
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16501461 ~ 16519607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTCGATGTGACCAGGCATTTCGTGTATATCTCTGATCAACCTGATCGATGGCCGCTGACAAAGATAACACCGCCAACATCAGTCTGATTGAGGACTTCAGACCTAGGCTGCGGAAACTCATTGAAATCGAGTTTGTACTGGATCACCTGAACTTCTTAGACAATGACAACAAGGACTTGATCCGAACTAAGGCGAGAAAAGAGAGCAATCTAAAGGCAGTGGATCTACTTATTGATACAATCATCAGGATCCGGCCACTTCCGAAAGGTTGGTTCAGGGAGTTTGTGGATGCACTGTCAGCTGGGGGTTGTAAACATGCTGCCACCTACGTGGAGGATAGCCCTCCATGTCCTGCTCTGGAGGCAGAGAATGACAACTGCGTCAGACTAATTGAACTTCTGTCGCCAAGTCTTTTGGGGATGAAGACTACTGATGTTTGCTGGGACTGTTTTTCTAAAGGTATTCTCACCGCAGAGGACCGTGAAATTATTTTAGCTGAATGTCAAAACCGAGGAAATATGGGTGGTGCTCGTGAACTGCTCAGGAGAATCGTGAGATTCCCGCCCGGATGGTTCTCCACCTTCTTGAAGGCCTTACAGGTCACTGAACACAATGACCTGTGTAAAGAATTGACAGGGGAGTCACCTGGTGATAACTTGATAGATGAGCCAGGTGTCCTGATGGCTGTGAATGAAGCTCCAGGGAATGTGGATCCAATGGTGGAGGAGGGTCCTGTAGAAGCAGCTGGGAAATCTTTTCTCCCAGAGCAGGAGACATTGGATAGCAGTGTGACCAGCATGCATCTGGATGAACCTTCAGAGGCTGACTCAGAAATTGCAGACCTATATAGTGGCACAGAAGAACCAATGGAAAATGGGAAACCGGAAAATAGCTTGGATCTCTCAATGTCAGGCTGTATTGCCCCTGCTGCTGAAAGCCCCCCAAAAGCTGTCATTGTTCTTCGAGATTATCAGATGGACGTGGCCAGGCCCGCCTTGGAGGGAAAAAACATCATCATATGCCTCCCGACAGGAAGTGGTAAAACCAGAGTTGCTGTCTATATTACCAAAGAACATCTGGACAGCAGGAGGAAAGAGGGCCGACCAGGGAAAGTGGTCGTCTTGGTTAACAAGGTGCCCCTGGTCGAGCAGCATTACTCCACAGAGTTCTGGAAGTTccttaaaaacaaatacaaagtTGAGAGGGTCAGTGGGGACTCCCAGCTCAAAATCTCCTTCACAGACATTGTCCAGAAAAACGATATTGTCATCTGTACAGCCCAGCTTCTGGAGAACTACTTGGAAAGGGCTCACAGTGGAGATGACGATGGGATTAAACTTTCAGATTTGTCACTAATTGTGATCGATGAGTGCCACCACACACAGAAGGGAGGAGTCTATAACCACATCATGATCCGCTACCTCAAGCAGAAGCACAAGAACGCCAAGTTAAAGAAAGAGCAGAAGGATACAGTGGCCATCCCACAGATCCTAGGCTTGACCGCCTCACCCGGCGTCGGGGGAGCCAAGAAAATTGAAAAAGCAGAAGAGCATATTCTACGAATCTGCGCAAACTTGGACGCATACAAAATAATGACGGGGAACCTTGGGGAAAACAAAAAAGAACCGCACAAAAAAATTGCCACTGCCGAAGAGAGAAAAGAGGATCCCTTTGGCGATGTTCTCAAAGGAGTCATGAATGCCATTCACATCCATGCTGAACTGAACCCTACCTGTGACCTAGGCACCCAGAACTATGAGCAGTGGGTGGTCCAGAAAGAACAAAATGCTGCAAAAGAGGAGAATCAAAAAGTGCGAGTTTGTGCTGAGCATCTACGGCAGTACAACGAGGCCCTGTACCTAGGCAAAACCATCCGCATGTGGGATGCCTTCAGCTTCCTGGACAAATACTTTGACGAGGAGCTGAAGAAGAAAGTGGCCCCAGAGGACGAGGAGGCCATCATTAAGACTGATACAGAGCGATTCCTTTTCACACTCTTTAAAGATAGCAAAGTGAAACTGCAGGAGTTGGCTAAGCTTCCCCAGTATGAAAATAATAGCCTAGCTAAGCTGAGAACCAAAATCCTGCATGAATTTACATCTAGAGAAAAGGCTAGAGGGATCATTTTTACGAAAACCCGTCGCAGTGCCATCGCATTAGCTCAATGGGTTCAGGAGAACTCCAAGTTCGAGGAGGTCGGAGTAAAAGCTTGCCATGTGATTGGAGGAGGAGGCCAGAGTGTCGTGAAACCAATGACCGCTGCAGAACAAAGGGATGTTTTGAACAAGTTTCAGAATGCGGAGATCAACTTGCTGATTGCAACAACAGTGGCTGAAGAGGGTCTGGACATAGCAGCATGTAACTTTGTGATACGATATGAGCTTGTGACCAATGAGATCGCTATGATTCAGGCCCGAGGCAGAGGCAGAGCTGAGGACAGTAGTTATACCTTAGTGGCAGGGGAGGGTTCTGGGGTCGCTGAACGAGAGAGTGTCAACGAGTACCGTGAGAAGATGATGAGCAAAGCTATCGATAAAGTCAAGAAATTAGATCAAGAGGAATATGAAAAGAGGATTAAAGAATTCCAGATTCAGGCGATCATGGAGGAAAGAGTGCGAACAACCAAGAAGAAGCAGAAAGGAATGAAAAAGGAGAGCCCGTCCAAAGTGAAGTTCAGTTGTAGAAGCTGCAACAAACCAGTCTGCTCAGGGGAAGATGTTGAAATCATTGAAAATATGCACAGAGTCAACGTAACACCCCAATTTAAGGAACTTTTCATTCAAAGAGAAAACACCTCACTTGTTAAAAGGCTACTGGACTACGAGTCCAATGGTTTCATAGCATGCAAAGACTGTGGACAGAGGTGGGGTTCAATGATGCTCTACCGTGGAATCGAGTGTCCCTGTCTTCACGTCAAGAACTTCCTGGTGACGTATGATGAAAAGAGGAAGAACGTCAACAAGTGGAGCGAGCTGGGTATCCAGTTACCTGCCTTTGACTATGCTGAACACGCTCGATCTGTGGCCGAAAGCTCAGAGGATGAAGAATCAATGTAATAATATGGTAACGACAAGGATTTTTTTGCGAAAAGTAAGAAGCAAAACAAATGCATGCA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12647 IFIH1, MDA5; interferon-induced helicase C domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2040332 lncRNA upstream 96319 16405002 ~ 16405282 (+) True G1782020
TU2040316 lncRNA upstream 105276 16396115 ~ 16396325 (+) True G1782004
TU2040298 lncRNA upstream 115103 16385946 ~ 16386498 (+) True G1781986
TU2040121 lncRNA upstream 226328 16274832 ~ 16275273 (+) True G1781818
TU2040119 lncRNA upstream 228050 16273298 ~ 16273551 (+) True G1781816
TU2040460 lncRNA downstream 80813 16599532 ~ 16599874 (+) True G1782131
TU2040466 lncRNA downstream 86731 16605450 ~ 16605680 (+) True G1782137
TU2040469 lncRNA downstream 91148 16609867 ~ 16610209 (+) True G1782140
TU2040472 lncRNA downstream 95745 16614464 ~ 16614726 (+) True G1782143
TU2040473 lncRNA downstream 96305 16615024 ~ 16621383 (+) True G1782144
XM_036958870.1 mRNA upstream 7150 16444038 ~ 16494451 (+) False LOC110502057
XM_021579104.2 mRNA downstream 16619 16535338 ~ 16537328 (+) True LOC110501499
XM_021579122.2 mRNA downstream 149772 16668491 ~ 16733286 (+) False LOC110501504
XM_021579117.2 mRNA downstream 149775 16668494 ~ 16722810 (+) False LOC110501504
XM_021579116.2 mRNA downstream 149775 16668494 ~ 16733286 (+) False LOC110501504
XM_021579118.2 mRNA downstream 154194 16672913 ~ 16722810 (+) False LOC110501504
TU2040116 other upstream 228491 16272389 ~ 16273110 (+) True G1781813
TU2039714 other upstream 438200 16062757 ~ 16063401 (+) True G1781423
TU2039549 other upstream 653006 15839604 ~ 15848595 (+) False G1781293
TU2039550 other upstream 653006 15839604 ~ 15848595 (+) True G1781293
TU2038754 other upstream 1067781 15424711 ~ 15433820 (+) True G1780575
TU2040736 other downstream 487315 17006034 ~ 17041673 (+) True G1782390
TU2041484 other downstream 777234 17295953 ~ 17296359 (+) True G1783087
TU2042053 other downstream 1223038 17741757 ~ 17742435 (+) True G1783622
TU2042125 other downstream 1391181 17909900 ~ 17911226 (+) True G1783691
TU2042522 other downstream 1583212 18101931 ~ 18222726 (+) True kalrna

Expression Profile