RNA id: XM_021579105.2


Basic Information

Item Value
RNA id XM_021579105.2
length 6503
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC110501500
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16541255 ~ 16596674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAAAATCAACAGAGGGAGTGAGTGTGCATTTGTAAGGCTGTTCCTGTCATCGTGAGAAGGTAGACTGCTTTGCAGAGTGTGTGCCTGTCCCGGCAGCAGAGGCACACAGGTACTACGGAGCTCAGCTCAGCCTCCTGACCTCGGATCAGCAGCACTCCTAAGTACAAGAGGACACCTTAAGGATATGTTCATGCATTCTGCTGGAGGCTTGGGTCCTAAAAGTCGTTTTTATTCTTTAAAGAGAAATGATGAAGAGGCTGTGGTGGACAGAGGTGGATACCGGTCCATGGTGAAAACCAATTTTGAGAAGGAGGAACTCGAAGGTCACAGGACACTCTACATTGGGGTACATGTCCCCATTGGGAAGAAGAGCCACCGGAGACATCGGCATCACGGACACAGACACAGGAAGAGAAGCAGGGAGCTGGACTCTGGAGTGGACAATGGAAGAGAGTCTCCCACATACTACACGCCATCCCAGAGAGTGCAGTTCCTGCTGGGCACAGAGGATGACGACGAGGAGCACATCCCCCATGACCTCTTCACTGAGCTGGACGAGATCTGCCTGAAAGACGGAGAGGACGCCGAGTGGAGGGAAACCGCCAGGTGGCTGAAGTTTGAAGAGGAcgtggaggatggaggagagcgCTGGAGTAAGCCCTACGTGGCCACGCTGTCCCTGCACAGCCTGTTCGAGTTGCGCAGCTGCATCCTCACTGGCATCGTGCTGCTAGACATGAGGGCCAGCTCCGTGGAGGAGGTAGCAGACATGGTGTTGGACCAGCAGGAGACCGTGGGTCCTCTGGGGGACGAGGTGAGGAGGAAGGTGAGAGAGTCCCTCCTCAAGCAGCACCACCACCAGAACCAGAAGAAGCTGGCCAACCGCATCCCCATTGTACGCTCCTTCGCTGACAAGAAGCAGTCCGAGCCCCAGTCCATGGACAAGAACGGTCAGGTGATTCCTCCCCAgacctctctacccatccctaaTGACGGCAAAGCTGATgtcagcagagagaacagtgctGTGGACTTCAGTAAGATAGACCTCCACTTCATGAAGAAGATTCCCCCGGGAGCGGAAGCGTCCAATGTGTTGGTGGGTGAGGCGGAGTTCCTAGACAAGCCTGTGGTGGCGTTTGTACGTCTCTCACCTGCAGTCATGCTCAACGGGCTGGCTGAGGTCCCCATCGTTACCAGGTTCTTGTTCATTCTACTAGGGCCTCTTGGAAAAGGGCCACAGTACCATGAGATTGGCCGATCCATCGCAACACTAATGACAGACGAGGTTTTCCATGATGTTGCCTACAAAGCGAAGGACCGCAATGATCTAATTGCTGGAATCGATGAGTTCCTGGACCAAGTTACTGTCCTGCCACCAGGGGAGTGGGATCCTTCTATACGAATAGAACCACCAAAAAATGTGCCGTCTCAGgagaagaggaagatTGCAGCACAGACCGGCATAGACCTAGGTGATGAAGACGAGCACGAGGGACATGGTGGTCCGGAGCTGCAGCGGACAGGACGATTATTTGGTGGTCTCTTGATGGACATCAAACGTAAGGCGCCCCACTACCTGTCCGACTACACAGACGGTCTCAGCCTGCAGTGCTTGGcctccttcctcttcctgtaCTGTGCTTGCATGTCACCTGTCATCACGTTCGGCGGTTTACTGGGAGAGGCAACAGAAGGACGCATAAGTGCAATTGAATCACTGTTTGGCGCCTCAATGACAGGAATAGCTTATTCCCTCTTTGCTGGCCAGCCACTCACCATATTGGGCAGCACAGGGCCTGTGCTGGTGTTTGAGAAGATATTGTACAAATTCTGCAAGGAGTATGGATTATCCTACCTCTCACTGAGAACCTGTATAGGGCTGTGGACAGCATTCCTCTGTCTGCTCCTGGTGGCCACAGATGCCAGCTCCCTGGTCTGTTACATCACACGATTCACAGAGGAGGCCTTCGCCTCGCTCATCTGCATCATCTTCATCTACGAGGCCTTGGAGAAGCTCATCCACCTGGGGGAACACTACCCCATCAACATGAACAACAACCTGGACAAACTCACACGATACTCGTGTTCATGTGTTGAACCTCCGGATCCCAGTAATGCCACCCTACGGTACTGGGAGCAGAACAACATTACTGCTTCGGAGATCTATTGGGAGGCACTTGAGGTCAAGGACTGCATAAAGAGGCGAGGGGAGTTTGTGGGCACCGCCTGTGGCCCTCATGGACCCTACATTCCAGATGTTCTCTTCTGGTCTGtcgttctcttcttctccactgtcttcaTGTCGGCTTTCCTCAAAGAGTTCAAGTTCAGCCGTTACTTCCCCACCAAGTTGAGAGCCGTCATCAGTGATTTTGCTGTGTTCATCACCATCTTTACCATGGTCCTGGTGGACTATGTCTTAGGGGTCCCGTCTCCAAAACTAAAAGTCCCCAGTGTGTTTAAGCCGACCAGAGATGACCGTGGTTGGTTGATCAGCCCGCTAGGCGGCAACCCTTGGTGGACCACCTTAGTGACAGTgatccctgctctgctctgcaccATCCTCATCTTCATGGACCAGCAGATCACCGCGGTCATCATCAACAGGAAGGAGCACAAACTAAAGAAAGGCTGTGGGTACCATCTGGATCTGTTTGTGGTGGGCATCATGCTGGGGGTGTGCTCCATCATGGGGCTGCCCTGGTTCGTGGCTGCCACCGTGCTCTCCATCTCCCACGTCAACAGTCTGAAGCTGGAGTCGGAGTGCTCGGCCCCCGGGGAACAGCCCAAATTCCTGGGCATCCGGGAGCAGCGCTTCACCGGCCTCATGATCTTCCTGCTCATGGGCTGCTCCGTCTTCATGACCTCTGTGCTCAAGTATATTCCCATGCCTGTCTTGTATGGAGTATTCCTGTACATGGGAGCATCTTCGCTCAGAGGGATACAGTTCTTTGACCGTCTGAAGCTGTTTGGAATGCCAGCCAAGCACCAGCCAGACTTCATCTACCTGAGATACGTTCCCCTGAGGAAGGTCCACCTCTTCACCATCATCCAGCTCAGCTGCCTGGTCATGCTCTGGGTCATCAAGACCTCCAATTATGCCATTGTCTTCCCCATGATGGTGTTGGCTCTGGTGTTTATTAGGAAGCTGATGGATTGCTTCTTCACCAAGAGAGAGATGAGCTGGCTGGATGATCTCATGCCAGAGAGTAAGAAGAAGAAATTGGAGGAAGCCGAAGAAGAGGAGGAGGAGCAAAGCATgttgggagaggaagagggagtagTGCAATTACCATTAGAAGGATATCAAAAGAGTGAATCCGTACTCAACATCACAGATGAAATGTCCAAAGGCTCTTTTGGAAACACGTGGAATGTCAACTCCGACAACTCAAAATGGTATTGCATTGCCTCAAGCATGTTTCCCCAAAATCAGCACATTGGGGTTTTCCATTTAAAACGTATCTTTGTTTCTCTTCTGTCAGTTTGTATAAAAAATGTGTCTTAATTTAAGATATGTGCCTGCAACTCAAACTTTCTTGCACATTTCCCCATGGCATCAATCCTTGTGAAAATATGGAGTTTGTTGAGAATATCTCAAGTTAGGATACCTCCTATACTGAATAGATACCGTGTCATAACCATTATATTGGAAACAGATGACAATGTACCATTGAATTCATAAAATGCCTCTTATTGACCCAAGTTCTATGCTCCGAGAATTTTCAGGATATCGATATGTCATGGCTATTGTATATGAACGAAATTGCAGATTCACCGTTCGGTTGAAACTAGATGCTACTTATTCACTGTAGAAAGGAGTTGTCTCTCCACTTTAGAACTGATGACTTTTCTTGACTGTATTTTCCCATTCCATCTCTGTCATAAACTCTCTTGTGTCCTCTAAGATGCTGAACCCCTCAAAGGTAAGAGTCTGATCCCCGTGCCCGTTTGAGCTTCCTTACTCCATTTGGTGACCATCACTTTTTGGAATAAAAATAATTATGTTTATCTTTGCATGATATGAGGCAGGATTGTACAATGTCTTATTCCTCAATTTACCATCAGGTTGAAATTAGATGCTGCTTATTTTTCAtctttcaaattgtcatgttatGCATTTTCGAGTTCATGAACACTGGGAGAGCACATGCTCTTTGAAACTCTTTGATGACTGCCAATGTTAGGCAAAGGTAAATATTATGGATGCTAAATCCATTACCTGTTCACTGCTTGGAATATAAACCCAGCGTATTACAGGCAGTGACAGATGAATGTGCTCAGTCTAAAGTGACATGACTGAGAAAGCAAGGATGTAAAGTGCATGTAGGAAAGTGCATCTctgacaacatgatgctgctgtgCCAATCAGGCTCTGCTAGCATGACAGTCATCCCTCTACCCAATCTACTATGCCTCAGCCAATGGCCGTGACGGGCAGTTCGGCAAGGAGCACTACAGCGTACTAGCTGCAGGCTCCCATTACGCAACAGCTGGAGAGTGTAATTATATTAGTACATCTCTCTTGTGAAAACTGCTCTTTCATGAACATTGTCTGAGATTCTGATCCCATTATACTTCTCAGCTGCCTGAACATACAGTGCAACTCTGTATGGGATGGGATTACCATGCAATTTACTAAAGCACATCAATATGGTGTTAATGTTCACGTTAGAGCCCCTCCCTACTAAAACATCAGTTGATGATACATTTGGGGACACAGATTAAGTCTAATCCTTGACAAAAAAATGATTCataatggagaatctccattgttGGAGCCGGACAGCTGATATAAGCTACGTTCTGAAATTGCATACTTGAAAGCACTAACAGCCAGTGTTGATACCCACAGCTTATCCAAGAACAGTGGATGGAAACAAAAGAAGAGGAGAAATATGCAGAAGGCCTGCTTCGCAAGGGAGACAAGTCTATGACGTTTCCCCCTCCACTGcgttgaaaacaaatcaaaattgTGTGCCACAGTTTACCATTCCTTTACATTTGTCTTGTAAATCTTTCTGTGTTCAAAAGCGTTAGTGTTTATAGTTTATGTGTCGGAAGCTGCTtctttgttttgatttgtttttgtgtttttaaATGTCAAGTAATACCCGCGTGATATAGGAGAGGTAAGTTTGACTGTATGTGAAAGCAACGGAATGTTACTTGTCGAGGATATATCTGTCACATTGAGAAACTGTTTTCAGcttgtgtttgttttttaatttattgaatgtattttgtatgtttttgtatttttttcaataTCATAATATGACAGTTGTTTTGAAATTGCTAAATTATCCAACCAGATAAACAATCGATTAAAAAAGTGTGTACAATACTGCAGTTAAAGACTATGTACTGTGCATCAGTATATACAATTGACGAGTTCATATATCTACAAAATAGGCAAAGTGAAAATGTACTGTATGCATGCAACTTTAATTAATCCACTTTTATGAAATATACAGCATCTGatgaaccttttactgcagtgggctaaatcagggtcacttGGAGTGTTTCTTGGTCGTCTTAAATCTACTTttaaacaaaagtatacacctcacacagatggttatgggtttaaacattttttattacCTTTTAAGTTTGCATCCCGgcgtaaaaaacaaacatttcgcCCATGGGGCCACTAGGTCGTTTGACTGCAGGAATTGGCTACTTTCATTGGCAAATACAAATCTACAGTATCTGTGTTAAAACATGTGCATTATGAGTTTAGCTATTTGCAATAGTCTTTAAGTTTAGAATATTTTCCAATTGTTTTACTACCAGTAAAGAGATTAGCTGAAAATAGCATTTCTATATTATTTATTGTTGGCAATTTATTCTTGTACAAAGAGCAAACATTGCATTGAGCATTTGATTAGTAAAACGCCTGACTTACGTTGTAGAATACTGTTATGCATATCAATAGATAGTATTGAAACAATGTTCAAGAAGAAAATATAATCCTGGCATTTATTTTAAATCATAAATATTTGTTGCCAAAGTTGAAATAGTTGCAGTTATTGCAGTATATCAATATTTTCAAGCTGCAAAGTTAATGCTTGTTTGTTCTTTTTTTATTTGAGTTGTTTGTCATGGGGGCAGTGTGTGTGCCCAGGAATGATTGTCCACTCAGTAACTAAATATGAAGCTTAACTGATACTTGAAGGCGTCTGCTAAAGGACAACATACATGGCTATAGAAACAAATGCAATAGCACTTTTTCTAGAAGGGGAACATTTATAGGAGCTATATTTATTGTTATAAAGATTATTAAACTATATTTCCTTTGTAAAATACCAACAACGAATTTGTTCACATCTAATTTTCTAAGCCTATTTATCCATAACACCTTTTGCTTCATTTTAAATGATCAGTGTCTGCACAATATTTTGAAATCTCTTGTTAACATTTCTACTCTGCTACTACTACTCGTGTTACTAATTGTACTTAGCTCTGAATAAATGTGTTTGAAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2040980 lncRNA downstream 46843 16492387 ~ 16494412 (-) True G1782605
TU2040979 lncRNA downstream 50365 16488914 ~ 16490890 (-) True G1782604
TU2040973 lncRNA downstream 61577 16478202 ~ 16479678 (-) True G1782599
TU2040336 lncRNA downstream 132476 16408370 ~ 16408779 (-) True G1782024
TU2040318 lncRNA downstream 144452 16396462 ~ 16396803 (-) True G1782006
TU2041032 lncRNA upstream 22973 16601653 ~ 16601976 (-) True G1782657
TU2041061 lncRNA upstream 53254 16631934 ~ 16632329 (-) True G1782685
TU2041080 lncRNA upstream 68657 16647337 ~ 16647525 (-) True G1782702
TU2041082 lncRNA upstream 80620 16659300 ~ 16659805 (-) True G1782704
TU2041086 lncRNA upstream 83317 16661997 ~ 16662206 (-) True G1782708
XM_021579092.2 mRNA downstream 452641 16045523 ~ 16088614 (-) True LOC110501493
XM_036958863.1 mRNA downstream 464225 16045523 ~ 16077030 (-) False LOC110501493
XM_036958862.1 mRNA downstream 520188 16002547 ~ 16021067 (-) True ttc21b
XM_021579091.2 mRNA downstream 520605 16002547 ~ 16020650 (-) False ttc21b
XM_036958861.1 mRNA downstream 540783 15990139 ~ 16000472 (-) True galnt3
XM_021579114.2 mRNA upstream 43145 16621825 ~ 16626574 (-) True LOC110501502
XM_021579115.2 mRNA upstream 69214 16647894 ~ 16654144 (-) True LOC110501503
XM_036958880.1 mRNA upstream 289643 16868323 ~ 16921493 (-) False LOC110501509
XM_036958879.1 mRNA upstream 289643 16868323 ~ 17049281 (-) False LOC110501509
XM_036958877.1 mRNA upstream 289643 16868323 ~ 17049282 (-) False LOC110501509
TU2039451 other downstream 716041 15685856 ~ 15825214 (-) True b3galt1b
TU2039382 other downstream 972721 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 3210760 13279280 ~ 13330495 (-) True G1778224
TU2036124 other downstream 3368276 13168780 ~ 13172979 (-) False G1778140
TU2041294 other upstream 478442 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 478442 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 1290849 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 1291448 17870128 ~ 17903951 (-) True G1783895
TU2044261 other upstream 2596887 19175567 ~ 19177740 (-) False LOC110501547

Expression Profile