RNA id: XM_021579115.2


Basic Information

Item Value
RNA id XM_021579115.2
length 1633
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC110501503
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16647894 ~ 16654144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGAAGTCTACTAGGCTCGGGGATTCCCCGAGGGAAGTTCCCCAAGCATTATAATGCATGTACAATGAACATTTGTACGAAATACACCACTCCCGCACGTAGTAAATGTAGGCCACCTGAAGAATAAGAACTTGTCGAAGTATCAAAACAATAATTTGGACATATTCGAATGAAGGTTGTGTGATATGTTGCGCCAGGCCCCATGACTGCTGTGTCAGTGATGATTGTGGAGCACACAGCATGGAGAGGAATATTGGAGATCAGCTCAACAAGGCCTATGAAGCTTACCGCCAGGCCTCTATCGAGAGAGACAGCGCCAAAAAGGAACTACAGCAGATGAATGTAAATTATGAACGGCACACTCAGAAACTTCAGAAACAGATAGAAGACCAGCAGCAGTTGATTTCGAAACTCAAAGCTCAGTTGATATCAGCAACTAAGCAACCCTCAGGAGAGGTCATAGGTGAGGCTGCACCTAGAAAACAGGAAGAAGAAACCTTGTCTCCTTCCAAACATCTCTTTGACAACCCAGAAAGCTCCTTGAGGAAGATTCATTACTTGaAGGAAAATATGGAAACTGCTGTGATTGTGTCATCTTCACCACACACAGCACCAGTAGCCAGCAGTTTTGAGACTAAAGATGTTCTTGAAGTGTATCAAGCTCTCCGGGGGAAATTCCAGCAGATACGCACATTAACCCAGAGACAAAAAGATCACCTGAAAAAAATCTACAGAGGAAATGACATGGCAAATGAGCAGCAGTTCTCCATGCCCATTCAGTGTACAGACGTGGCCGTGGAGCAGGCGGAGATGCCCTTCCCTTCAGCCTTGAGGCCAGGGGTCGACCTCCAGCACCCGCCCATGTCCCTGGCATCCCGCGGTGCCAGCCCAGAGGACATGAACCAAGTGGACTCTCTCACCACACTCAGCATCAAGTTCCCCCCCTCCACAGACAGTGAATACGAGTTCCTGAACAGCGCTCTGGAAAAACGCATTGACCTGTCCGTGCCAAGGGCAACAGTCAGCACTGTCCCTGCCGTCATAGAGGTACCGTCTATGGAGCTGGCCATCCCATTCCTGTATCctacctctgtctctcaccctccctccccctccgtGTCGCTCTCACACAAGAGTGTGCGTGGACACCAGCAGCCCCTGTGGCGCCCTGAGCTTTGCAACGCTACTACAGCAACAGCAGCGCAGGCCGTGAGTGCGGAACAGCAACAACAGATGAACAACAACAGCCCTGATATATGTACCTACTGCAACGCGGTAGTTCCCGAAGAGCACATGAACAGCCACCTTTTTACTCATTGCcagagggagagtgaagacagcaATTGACACTAGCAGACATTGGCTGCCCAGTACAACACCTCTAGGGTTGATTCATGGTTAATTCATGTCTTTGTTTCAACACCATGAATAACACGCGCTCTGCTGTATGTCACATGACACTGGCGTTTTGGGACTTGAATCCACTCtcaaacatttatttaatttgtAAGAGGTTAATGGTACATTTTACAGTTTTTGTCTTAAGATATTACTTGGAAATTGCACGTCGATTTACGAAATGATTTTGTACAGTATCGGTCTGAGTGTAATAAAGCAAACATTTAATCTTG

Function

GO: NA

KEGG:

id description
K12650 TANK; TRAF family member-associated NF-kappa-B activator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2041080 lncRNA downstream 369 16647337 ~ 16647525 (-) True G1782702
TU2041061 lncRNA downstream 15565 16631934 ~ 16632329 (-) True G1782685
TU2041032 lncRNA downstream 45918 16601653 ~ 16601976 (-) True G1782657
TU2040980 lncRNA downstream 153482 16492387 ~ 16494412 (-) True G1782605
TU2040979 lncRNA downstream 157004 16488914 ~ 16490890 (-) True G1782604
TU2041082 lncRNA upstream 5156 16659300 ~ 16659805 (-) True G1782704
TU2041086 lncRNA upstream 7853 16661997 ~ 16662206 (-) True G1782708
TU2041054 lncRNA upstream 10458 16664602 ~ 16668745 (-) True G1782678
TU2041094 lncRNA upstream 17364 16671508 ~ 16671792 (-) True G1782716
TU2041095 lncRNA upstream 17952 16672096 ~ 16672365 (-) True G1782717
XM_021579114.2 mRNA downstream 21320 16621825 ~ 16626574 (-) True LOC110501502
XM_021579106.2 mRNA downstream 51220 16541255 ~ 16596674 (-) False LOC110501500
XM_021579109.2 mRNA downstream 69162 16541255 ~ 16578732 (-) False LOC110501500
XM_021579107.2 mRNA downstream 69213 16541255 ~ 16578681 (-) False LOC110501500
XM_021579112.2 mRNA downstream 69213 16541255 ~ 16578681 (-) False LOC110501500
XM_036958880.1 mRNA upstream 214179 16868323 ~ 16921493 (-) False LOC110501509
XM_036958879.1 mRNA upstream 214179 16868323 ~ 17049281 (-) False LOC110501509
XM_036958877.1 mRNA upstream 214179 16868323 ~ 17049282 (-) False LOC110501509
XM_036958878.1 mRNA upstream 214179 16868323 ~ 17049282 (-) False LOC110501509
XM_036958881.1 mRNA upstream 216439 16870583 ~ 17049284 (-) False LOC110501509
TU2039451 other downstream 822680 15685856 ~ 15825214 (-) True b3galt1b
TU2039382 other downstream 1079360 15567503 ~ 15568534 (-) False G1781137
TU2036210 other downstream 3317399 13279280 ~ 13330495 (-) True G1778224
TU2036124 other downstream 3474915 13168780 ~ 13172979 (-) False G1778140
TU2041294 other upstream 402978 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other upstream 402978 17057122 ~ 17063385 (-) True LOC110501514
TU2042341 other upstream 1215385 17869529 ~ 17903951 (-) False G1783895
TU2042338 other upstream 1215984 17870128 ~ 17903951 (-) True G1783895
TU2044261 other upstream 2521423 19175567 ~ 19177740 (-) False LOC110501547

Expression Profile