RNA id: XM_036958899.1


Basic Information

Item Value
RNA id XM_036958899.1
length 4753
RNA type mRNA
GC content 0.52
exon number 27
gene id fmnl2a
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17906058 ~ 17995814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAGCTCGTTACTCCAACGTGTAGAGATGTGATTGTGAATGCGGCGTGTAGAGTCGACAGGACTCAACTGTATTAGTTAGTCATCAATGGGGAGATTTAGCTAGCTACACATACGGGGATTGCTAAACCTGAATCATGCACATCGTCATTACATCTAACTGGGAGTGGAGCAGAAATTGTGCAAGATATGGATAGGAGTTATCTTTGGTTCTAGAGATTGCGCGGTTGTTGCTCCGAGTCAAGTTTCCAGCAAGTCCCATATTCCATAATGCTTCACGAGGACTCGACTCATTGGAACCATGTGCACATTTCCTCACGTGTGTTTCATGTTGAAGCGGTGAGGCTGGGATAAAACGGGAAAATTAGCAAACAACAAGCAACCgtgcagatatatatatatatttattttttgggggggtcgtAGACTTTCTGTGATTTCTGAAGTCGAGGAGGAAGGTGTGGACGGTAGTTGTGATCCAGCTCAAATAAATCAGAAACATGGGGAACGCAGGGAGTATGGACCAACAAACTGATTTCAGGGGACACAACATGCCTTTGAAACTGCCGATGCCGGAGCCAGGTGAATTGGAGGAGAGATTCGCAATCGTTTTGAATTCGATGAACCTTCCTCCAGACAAAGCGCGACTACTGCGGCAGTACGACAACGAGAAGAAGTGGGAGCTCATCTGTGATCAGgaACGATTCCAAGTGAAGAACCCACCTCACACATACATCCAGAAGCTGAGGGGTTATCTGGACCCAGCGGTCACCAGGAAGAAATTCCGACGGAGAGTGCAGGAGTCCACCCAAGTCCTGAGAGAACTGGAAATTTCGTTAAGGACAAATCACATAGGGTGGGTGAGAGAATTCCTCAACGACGAAAACAAAGGCCTGGATGTGTTGGTGGAGTATCTTTCTTTTGCGCAGTACGCTGTCACGTTTGATGGCGACAGCGCGGAGAACAACCTGGAGAAGTCGGTGGACAAGCCCTGGAGCAGATCCATAGAGGACCTGCACGGGGGGAGTAACTTCCCGTCCCCCGTCAACGGGAACAGCATCTCCCGCGCCGGGCGACACTCCACGCTACGGACGCCAAGCTCTTTAAAATGCCCAAAGTGTTCTCAAGGACGATGTTGCAACACGTTGCCGAGCCGGAGAACTCTGAAGAACTCCCGGCTGGTCTGTAAGAAGGACGACGTTCACGTCTGCATCATGTGCCTGCGAGCCATCATGAACTACCAGTACGGCTTCAACATGGTGATGTCCCACCCGCATGCTGTGAATGAAATTGCACTAAGTCTCAACAATAAGAATCCCAGAACCAAAGCTCTCGTGTTGGAGTTACTGGCCGCCGTGTGTCTCGTCAGGGGAGGACACGAAATCATCCTCTCTGCGTTCGACAACTTCAAGGAGGTGTGTGCTGAGACACAGAGGTTCGAGAAGCTAATGGAACACTTCAAGGACATGGACAACAACATTGACTTTATGGTGGCGTGTATGCAGTTCATCAACATCGTGGTCCACTCAGTAGAGGACATGAACTTCAGGGTTCACCTGCAGTACAACTTCACCAAGCTCTGTCTGGACGACTACCTGGACaaGCTGAAGCACACGGAGAGTGACAAGCTGCAGGTGCAGATCCAAGCCTACCTGGACAACGTGTTTGACGTGGGCGCCCTGCTGGAGGACGCCGAGACCAAGAACGCCGCGCTGGAGcgggtggaggagctggaggagaacaTGTCACATATGACGGAGAAGCTGCAGGACACGGAGAACGAGGCCATGTCCAAGATCGTGGAGCTGGAGAAACAGCTGATGACGCGCAACAAGGAGCTCGACGCCGTCCGGGAGGTGTACAAGGACGCCAACTCGCAGGTGCACACGCTGCGGCGGATGGTGAAGGAGAAGGACGAGGCCATCCAGAGGCAGTGCAACCTGGAGAAGAAGATCCACGAGCTGGAGAAGCAGGGCACTATGACGGTCCAGAAGAAGGGCGACGGGGACATCTCCATCCTGACCTCGCCGCCCGCCCCCGGGGGCCCGCTGGTGGCCGGATTTGAGGGTGTACCAGGGGGCTATAACGGGGGTGCGGTCAGCCCGATGGGGTCGAATGGGATCCCGGGAATGCCCGCgccgccccctcctcctcccccaccacctGTGCCTGTGCCAAATGGACCATTGGCTGGCCTCGccgctcctccccctcccccgccGCCCCCGCCTCCCCCTGGCCCTATGGCGGTGCCTGCCCCCccgccccctcctccaccccccatgGCCCCACCGCTGCCCGGCTGTGGATCCCCCACTGTCATCTTCAACTCAGGGTTAGCAGCCGTGAAGATTAAGAAGCCCATCAAGACCAAGTTCCGTTTGCCGGTGTTCAACTGGGTGGCACTGAAGCCCAACCAAATCAACGGCACCGTGTTCAACGAGATCGACGACGAGAGGATACTGGAGGACCTGAACGTGGATGAGTTTGAGGAGATGTTCAAGACGAAAGCCCAGGGCCCGGCCATCGACTTGGCCGTGAGCAAGACCAAGATCATCCAGAAGGGTCCCAACAAGGTGGCGCTGCTGGACGCCAACCGGGCCAAGAACATGGCCATCACCCTGAGGAAAGTGGGCAAGGCCCCCGAGGAGATCTGCAAGGCCATTCAGCTGTTTGACCTGCGCACCCTGTCGGTGGACTACGTGGAGTGTCTGATGCGCTTCCTGCCCACGGAGAACGAGGTGAAGATCATGCGTCAGTACGAGAAGGAGCGGAAGCCCGTCGAGGCTCTGACGGACGAGGACCGCTTCATGATGCACTTCAGCAAGATCGAGCGGCTCATGCAGAAGATGACCATCATGGCCTTCATAGGCAACTTCTGCGAGAGCGTTCAGATGCTGACGCCGcaaCTTCATGCGATCATCGCAGCATCTGTGTCAATAAAATCCTCACAGAAACTGAAGAAAATTCTAGAGATTATCTTGGCTCTCGGAAACTACATGAACAGCAGTAAAAGGGGAGCGGTATACGGTTTTAAACTACAAAGTTTAGATTTGCTACTAGACACCAAGTCGACAGACCGGAAAATGACACTGCTGCACTACATAGCCAACGTGGTGAAGGAGAAATACCAGCAGGTCAATCTGTTCTACAACGAACTGCATTACGTGGAGAAGGCCGCAGCAGTGTCgttagagaacgttctgctggATGTGAAGGAGCTCCAGCGGGGAATGGACCTGACCAAGAGAGAGTACAGCATGCACGGTCACAACACCATGCTCAAAGACTTCATCACACACAACGAGGGCAAGCTGAAAAAGCTGCAGGACGACGCCAAGATCGCACAGgACGCCTTCGACGAGGCGGTCAAATTCTTCGGCGAGAATTCCAAAACGACGCCCCCGTCTGTGTTCTTCCCGGTGTTTGTGCGCTTCGTCAAGGCCTACAGGCAAGCGGAGGAGGACAACGAGCAGAAGAAGAGAGCGGAGCAGATGATGATGGAGAAACGTCTGGAGCAGGAGGCCATGATGGACCAGGAGGACAAGAAGTCTCCGTCCCATAAGAACACCCGGGGCAGGAGTCAGCAGCAGgaggtgatagctgagctgaggaAGAAGCAGGTGAAGGATACGGGCAGCCGCCACGTCTACGAGGGAAAGGACGGAGCCATCGAGGACATCATCACCGaTCTTCGCAATCAGCCTTACAGGCGAGCCGACGCGGTGAGGAGGAGCGTCAGGAGACGCTTTGACGACCAGAACTTGCGGCCGGTCAACAACTCTGAAGTCGTCATTTGACGAGGGAGAAGTGCATGTGTTAGGGGCGGAGGGGGAGTGATGTGGAAAGTGTAGCAGTCTCTCACTCTTAAGGActgaaggagagatgatgggtcTGACAGGTCAGTTATAGGGAACCTTAGACAAGCAAAGTGCCTAAAACGTACTTGTGTTCAGTTGTTGTTTTGCCTCCTGTTTGTCTGTcttgtgatttttatttttttattacttCAAGCAATACAACTTGATCTGGCTTTGTGTTTTCCTTTGATATGTAAAACTGGACACAGACGTCTGTAGCAGGGATTCCTGAAAGAAGTGTAGAATGTAACGGGTCACGGTTCCCTTAGCTGTCGAAAGGTATTCCGCCACAGGGGATGAATATGGTATTTCATAGCTAGTATCTTACTACATTCCTGGTGCTACTGCCATCACTCTTAGAAATTACACAATGTGCTCAAGTGGCACTTTAAAGAACGCATGAGCTTTTCCATTGTTACTAAAGGGCTAATGTACTTTTTAAAGgggacatacactatatatacaaaagtatgtggatttgtctgtttcagccacacccgttactgacaggtatataaaatcaagcacaccgccatgcaatctccatagacaaacattgacagtggaatggccttactgtagagctcagtgacttaacgtggcaccgtcataggatgcccccTTTCCATcgagtcagttcgtcaaatgtatgCCCTGGTCGACTGTAGGTGCTGTTACTGTGaattggaaacgtctaggagcaacaacagcttagCCGTGGTAGACTACGCAAGCTCGAAGAACGGAACTGCCGAGTCCTGAAGGcaagtcaatgtaaataagaatttgttcttaaccgacttgcctggttaaatgaaaattgtctgtcctcggttgcaacactcactacagagttccaaactgcctctggaagcaacgtcagcacaataactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2042349 lncRNA downstream 84487 17818656 ~ 17821571 (-) True G1783903
TU2041940 lncRNA downstream 293657 17611203 ~ 17612401 (-) True G1783513
TU2041832 lncRNA downstream 352238 17553552 ~ 17553820 (-) True G1783410
TU2041812 lncRNA downstream 365175 17540554 ~ 17540883 (-) True G1783391
TU2041775 lncRNA downstream 391975 17513881 ~ 17514083 (-) True G1783354
TU2043087 lncRNA upstream 14111 18009924 ~ 18011930 (-) True LOC110501531
TU2043108 lncRNA upstream 57581 18053394 ~ 18053684 (-) True G1784633
TU2043211 lncRNA upstream 222179 18217992 ~ 18228343 (-) True G1784734
TU2043219 lncRNA upstream 235779 18231592 ~ 18231848 (-) True G1784742
TU2043306 lncRNA upstream 362751 18358564 ~ 18359224 (-) True G1784829
XM_021579170.2 mRNA downstream 90714 17748517 ~ 17815344 (-) False LOC110501526
XM_021579169.2 mRNA downstream 90714 17760904 ~ 17815344 (-) True LOC110501526
XM_021579168.2 mRNA downstream 197814 17678888 ~ 17708244 (-) False LOC110501525
XM_036958895.1 mRNA downstream 197814 17678888 ~ 17708244 (-) True LOC110501525
XR_005038795.1 mRNA downstream 419842 17445857 ~ 17486216 (-) True LOC110502059
XM_021579175.2 mRNA upstream 14110 18009923 ~ 18087956 (-) False LOC110501531
XM_036958908.1 mRNA upstream 14110 18009923 ~ 18087956 (-) False LOC110501531
XM_036959577.1 mRNA upstream 102992 18098805 ~ 18100719 (-) True LOC110502115
LOC110502060 mRNA upstream 431329 18427142 ~ 18428030 (-) True LOC110502060
XM_021579180.2 mRNA upstream 512190 18508003 ~ 18526067 (-) True wnt10a
TU2042341 other downstream 2107 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 2107 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 842610 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 842673 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2080844 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 1179754 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 1179754 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 1325375 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 1660469 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 2349886 20345699 ~ 20346014 (-) True G1786832

Expression Profile