RNA id: TCONS_00053007


Basic Information

Item Value
RNA id TCONS_00053007
length 4053
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_026312
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23323244 ~ 23327553 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTTATTTGAAAATGGAGAACATCTTCCTCTGGATCATGTGGTAGCAATTTACATGGCAGGGGTTAAAAAATAGGGGACTAAAATAATACAGAGGAAATGGCGAAGAGTTTGTAAAACAACTATAAAATCAATGGCATTCCTGCTTTATGTTAGGTGTCAGACAAATGCGCTAATGTAAAACTATGGCAATTACAATCAAACTTCAAGTCTTCGCATACTGTAggctttttttcccctcaatgcATTTCTGTTAAACAGCTCGCTTAACGGCAACATTAGACACCAAAAATAAAGAGGAATTGACTATTACACCAACAAGCGAGGAGAGAAACACAAAGCTCTTTCCTGTACATGGAAGCAAATTCATTTCATTAAAGGCAgcagctaagctaagctaagctaaagtgtGAAATTTAAAAGCGTTTATAGCTAAGATTCAAAGTGTCCGTTTCCACCATAACTCATTTCTTTGCTCTCTACAGCGACTCATGACAAATCcacttcagttttctcttgtGCCTGGACATCCATACTTGGTGGTTGTGTATTAGTCAGctctttacaaatatatatatttcagcaaACAGAGGCTCAAATGCACTGCAGTTATGGCCATTTTGTTCGGATATCTTTGCGAATGTCCTTCTACGCAGTCAACGACATCAAAAACTCTTTCAAAAATTTGCTAATCGGTTTAATGTCGATTAATTACCtttatgtcaaaatgacatcaaattgaaactagcatcaaaaacacatcaaaaatcaTTTACAGTACTGTCCTGTTTTTGACGCCAACATTAgacgtcaatttgatgttgtttcaTCATCAATGTAGTTCATATGCATTGTAGGGATACAAAATCCATTGTAAATATGGTCATTTTGTTCGTATATCTTTCCGAATATACCAGTCCAGTCTTCTATACCAGTCAATAacatgaaaaacattttaaaaatatgctaattgGTTTAATGTCAATTAACTACATTGACATCAAAACGACACCAAATTGACAAACACTAGAGTCAGAAATGCATCAAAAATCATTTACAAGACTGCTGATTTGACGCTAATTTTAGACGTCAATTTGCTGTTGTTTTGACATTATtgtagtttacatgcattgtagggatacaaaataaatagtaaatgtgacaattttgttcGTATATCATTCATACAATATTAGCGACATcaaaaacacttcaaaaacatGCTAGTCAATTCAATTGGCGCCAATTTGATGTTGCTTACATGCATTGATgccaaaacaacataaaattgacgtctaaatttagattttgatgtgtttttgatgcTAGTGTtagatgtcgttttgacatcaaattcATGTTTGACTAGCATCAATGacatcaaaaacatttttaaaatatgcttaTCGATTCAATGTCAATTAACTATTTTGATATCAAATTGACATCAAACACTAGAGTctaaaatgcatcaaaaactATTTACTAGACTCTCCTGATTTGACGCtaattttagatgttagtttgaTGTAAATACGACCATTTTGTTCGCATATCTTTCCGAATGTCCTTCTATACTAGTGCAATATCAACAACATCAAAAACATGTTAATCAGtttaatgtcaaaacaacatcaaattgacatctaccACTAGCgtcaaaaacatcaaaaaaaacatttacaggacTGTCCTGGTTTGACGCAAATTTTAGATGTCAATTCGACATAGTTTACATGCATTGATGTAAAAACATCATCTAGTTGATGTctgaaattagattttttatctgttttttgacGCTAGTGTTAAATGTCGTTTTGACATCTGATACTAGcatcaaaaatacatcaaaaatactTTACAGGACTGTCCTGTCTTTGACGCCAATATTAGACgccattttgacatcaaggtagtttataTGCATTGTAAGAATACAAAATCAATTGTAAATTTGAAATTGACTCTTTCAGATAAGAAACATTTCTTATGCAACACGTTGTGTGttgatattttggtggtcaaaagggcatcaatgtgtggatgtcaaaaaatgtcaatgttttcaacACCAAATCGATTAGCATTGTTAACGTCGATGTTATGCCGTTTAGACGCAACACAAGGTTTCTCTCACATTGTGCAAATAAAAACCAAAAATCCCTCAAAAATGGGTTTGTTTTTAAGaactatatacataaatatataattgcGGTATCCTTTCAGTCAAGTTGTACTTGGTTGCTAGAGAACACTGATGTGCTATCAGGGTTAAACAGCCAAGAAATTACTAAAATTGAGATAATAGTCCCATAATTATTGGagccaaaaaataaagtttctCATCTGACAGAAAAATGATTTTAGTTAACTGTGACTGCGAAAGTCAGATAAATGCCGTCTAATTGCAGCTTAAGATGACTGACGTATAAATTATGCCACAAATTATGATTTTAGGACTCCTAGAGTGTGTTGCTTGAACATATCATTCCACAAAACTGCTGCTGTTAAGCCGTGGTGACTTTTCAACTCATAGACTTCATACGCAAGCGAATGCAGCAGAcctggaaacgcaagctcgtacgacaagttttgcagtttgctgcattgcaaagttcaagcttggtaaactctgacctgtgaaaccACATCGCGTGAGTGCATGAGACTAATCAAAAATCAgaacatgacctttctggacagatattttaaatatggagcaattgcTCACTGTAGAGcagaatttcacaagctcaaaGTGTGACCGCTGCATCACTTTGCTGCTTTACATTATCAACCAatgtaaattaatacaaaaaattaaagaaatgatgATTAAAGATTGTAAAACCTGAAAAAGTAAATACTTTCAGAAGAAATATGGAAGAATTTTCAATACTGCGCTGTGAATGGGAGTTttccagcatttaaaaaaaacaaataattctcTTTTTGGTTAATTTACGGGACGTCGAAGAAAGTAAATTTGAAAAACGATTTTTCAAGTGCTGTTCACACGATTTTTCCATTTGAAATGAGAGACAAAGCACCTAAATAAGCCAAAGGCAATGGTTgaaaacaatacttttctgacaTGGGAACATGTTCTGTGGAACAAGACCCTTAAATACTTCAAGCAAAAACGTTTTCATGACATTTTTACTTCAAAAATTCTTATTTCTGTGGATTTGATTTGACAAAACGGATAATAATTAAAGCCTTAAACTCATTCACTTGCTGTTAAGACTCCAGTTTTCCCAGGAAtacgattttttaaaaatgtaaaaacatttaagacaaaaaaaacaaacaaacaaacacaaaaacaacccgATTTCACAAGAAAGCCTAACTATCTTAAAGATGGCAATTTCATACTAACTTAAAAACTAGAAGTTCATATTGAAACATGACGAATGtacaaattcatataaattaAATTGCCATAAATTTGCCAAAATGTAAAACAGTTAGACTTTCCCTTGAGACCATGTTGCTTTCCATCACCACAACACAACTAGAAGGAGATTCCACATCCTTGTATACGACTGATAATACTGAATCAATCCACGTCCAGCAGGACTGAGGACAAAGAAAGCCATAAAACGTTAGCATTCTCCAGGACTCTCTGTAGCGCAGTCCAAGTGCACTTAGCGTGGTCCCCGGAGAGCGATGCATTGGAGTAAACACACTGCTTAAACAGAGAGGGCTGGCGAAAGGGTTTGGGAAGCAATAAAACAAGGCCATATTTCTGATTGATTCACAAGTCTTACTCTGTCACCTTACAGAGTAACAGGGTTGACCTAGGCACACGAGCATCGACTAACCACAAGCACTGAACTGGTGATGTTTCTTTACCCATAAGCCCCATCATCCTACATTTCCATTACCCTACACAGAACGCAAACATGAGAAACCCCTGATTGCTAACTCTAAACGTCAAGATTACACGTTCCCCACCCTGTTTTCCAATGCCGTCCTTAAGCTAAGAAAAAATCCCCTCTCCTTCGCCATGCACAAAATGGACCATTTTCACTGTATTATTTGCCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053005 lncRNA downstream 82523 23237515 ~ 23240721 (-) True XLOC_026311
TCONS_00051310 lncRNA downstream 84935 23224847 ~ 23238309 (-) False XLOC_026311
TCONS_00051309 lncRNA downstream 94202 23220270 ~ 23229042 (-) False XLOC_026311
TCONS_00051308 lncRNA downstream 94202 23220270 ~ 23229042 (-) False XLOC_026311
TCONS_00053004 lncRNA downstream 99200 23220270 ~ 23224044 (-) False XLOC_026311
TCONS_00051323 lncRNA upstream 213824 23541377 ~ 23574643 (-) False XLOC_026318
TCONS_00051327 lncRNA upstream 266902 23594455 ~ 23596840 (-) True XLOC_026319
TCONS_00053008 lncRNA upstream 335591 23663144 ~ 23859769 (-) False XLOC_026322
TCONS_00051331 lncRNA upstream 358645 23686198 ~ 23686700 (-) False XLOC_026323
TCONS_00053009 lncRNA upstream 358645 23686198 ~ 23688287 (-) True XLOC_026323
TCONS_00051307 mRNA downstream 493534 22817155 ~ 22829710 (-) True XLOC_026309
TCONS_00051306 mRNA downstream 956682 22362847 ~ 22366562 (-) True XLOC_026307
TCONS_00051305 mRNA downstream 957212 22362687 ~ 22366032 (-) False XLOC_026307
TCONS_00051303 mRNA downstream 964125 22341043 ~ 22359119 (-) False XLOC_026306
TCONS_00051311 mRNA upstream 7414 23334967 ~ 23406964 (-) False XLOC_026313
TCONS_00051312 mRNA upstream 13311 23340864 ~ 23407720 (-) True XLOC_026313
TCONS_00051314 mRNA upstream 101400 23428953 ~ 23461954 (-) False XLOC_026315
TCONS_00051316 mRNA upstream 135266 23462819 ~ 23471774 (-) False XLOC_026316
TCONS_00051317 mRNA upstream 137204 23464757 ~ 23470986 (-) False XLOC_026316
TCONS_00051290 other downstream 1146116 22161451 ~ 22177128 (-) False XLOC_026304
TCONS_00051287 other downstream 1706204 21616920 ~ 21617040 (-) True XLOC_026301
TCONS_00051260 other downstream 2324884 20994504 ~ 20998360 (-) True XLOC_026288
TCONS_00051258 other downstream 2340538 20972019 ~ 20982706 (-) True XLOC_026287
TCONS_00051254 other downstream 2529588 20720840 ~ 20793656 (-) True XLOC_026284
TCONS_00051313 other upstream 54939 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051315 other upstream 102692 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051337 other upstream 490369 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051343 other upstream 1075596 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051348 other upstream 1418213 24745766 ~ 24745881 (-) True XLOC_026332

Expression Profile

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