RNA id: XM_036958918.1


Basic Information

Item Value
RNA id XM_036958918.1
length 2146
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110501533
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18391837 ~ 18395440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGACCCTAatggggtgcacgttttgttttttgctcTAGCACTATACAGCAGATTCAAATTACCAAAGCTTGATtactagggcaaaaaacaaaacgtgtaccccttggggtcccgaggaccgagtttgagaAACGCTGAACTACGTCTGTTCGgagGTGTCAAGTCTTCTTTATCAACGCGCCAAAGATGAGGACTTAAAATACAGCTCTGTGTGTGGAGTCCCATACACTGCTCTACCCTTGGCTACAATAATCTGCTCCAATCACGAGCTGCCCATGCTCATCCGAAGAAAAGAAGCCAAAGACTATGGAACTAAGAAGATTATAGAGGGGACTATTCACCCTGGAGACACGTGTCTGATCATCGAGGATGTAGTGACCAGCGGCAGCAGCGTCATGGAGACGGCTCTGGTGCTCCAGGCGGAGGGTTTAAGGGTGACTGATGCCATCGTGTTGATGGACAGGGAGCAGGGCGGCGGGGCCATGCTGGCCAAGAGGGGCATCACGCTCCACTCCGTCATCTCCATCTCCAAACTCCTCAACACCCTGTTTCAGGCAGAGCGCATTGACTCGCTCACGGCCCAGAGCGTGTGCAGGTTCATCCAGGAGAACAACACCTACAAGCCCTctggtgaggaggagaagaaCGGCTCGCCTGCAGCCAAAAAGCCCTGCAAGCCGGCGGAGCTGAGCTATGGAGACAGGGCCCAGCTCCAGAATACACACCCTCTGGCCGCCCAGCTCCTCAGACTGATGGAAGAAAAGAAGACCAACCTATGTGTGTCGGCAGACATGACGGGCTGCGAGGAGCTGCTGCAGCTGGCCGACTCTCTGGGGCCTCAGATGTGTGTGTTGAAGACCCACGTGGACATCCTTCAGGACTTCAGCCCAGCCTTCACCCAGTCACTCAAGGACCTGGGTCTCAAACACAACTTCCTCATCTTTGAGGATCGCAAGTTTGCCGACATCGGGAACACGGTCAAGCACCAGTATGAAGGTGGGCTCTACCAGATCTCCTCATGGTCTCACATCGTTAATGCCCATGCGGTACCAGGCCCTGGGGTGGTGAAGGGGCTCAGTGCAGTGGGCCGCCCGCTGGACCGCGGCTGTGTCCTCATAGGTCAGATGAGCTCCCAGGGTTCCCTAGCAACAGGGGACTACACGCAGGCTGTGGTGAAAATGGCTGAGGAGCATTCTGAGTTTGTTTTTGGGTTCATCTCTGGCGCCAAGATCAGCAACAAGCCTGAGTTTGTACACATGACTCCAGGGGTGCAGATGCAGTCAGGAGGAGATGGTCTGGGCCAGCAGTACTCCAGTCCTGATGATGTGATTTGTAAAAGAGGCTCTGACATCATCATCGTTGGCCGTGGTATCCTGGGGGCCTCTGATAGGGTGAAGGCTGCTGCAGAGTACAGAGAGGCAGGCTGGAACGCATACACCAAGAGACTCAACACATCTAGCCAAGGAGACGCTAAAGACTAGGGctacatcctaaatggcaccttattccatatatattgcactacttttgaccagagccctatgggccttggtcaaaagtagcgcatagggtgccatttggatgcTGACAAGACTAGAGCAGACACCACATCGCTAATGTGAAACATGATTATTCCCTCCAACCAGCTGCTGAGACCATTCTCTTAGCCACAACTAGTTACAAAACTTGCTAAATCAACTGAACTGCGACAATGCTAATTTTAACCTTTGGCGACAGGGAtatgtttcagtttttttttcttccatagTGTTATTTTTATATAATCTAATTTgccattttttaaatgatttgtgTTGACCAGTTATATGTAATTGtgaaatgaattaaataaatacatttgctgTAATTATCAGTTTTCTTTGAAGTCTATAAACATTTTATCAGGGGTGTTTTCTACAGATGAACAGATACAGATGGAAGGCTGTCAAAAGATTCATTCTACAAAACAAACCTTGGCATTGTGTATTAATTCATTGACATTGCAACAATCAATTGACTTGTGTTGACAACAATGTATTGGTGAACCAGTGAAGTCTTTATCCCTCTGATGATTATTTGTGATGTGCCATCCAGGTGTAGGGTTTGCTGTATACCCTAGCCATTAATAAACCGTGAATATGCTGA

Function

GO:

id name namespace
GO:0044205 'de novo' UMP biosynthetic process biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0004588 orotate phosphoribosyltransferase activity molecular_function
GO:0004590 orotidine-5'-phosphate decarboxylase activity molecular_function

KEGG:

id description
K01591 pyrF; orotidine-5'-phosphate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2042489 lncRNA upstream 333014 18058334 ~ 18059136 (+) True G1784035
TU2042488 lncRNA upstream 334023 18057916 ~ 18058127 (+) True G1784034
TU2042487 lncRNA upstream 335275 18056670 ~ 18056875 (+) True G1784033
TU2042485 lncRNA upstream 339550 18052289 ~ 18052600 (+) True G1784031
TU2042475 lncRNA upstream 350014 18041937 ~ 18042136 (+) True G1784021
TU2042848 lncRNA downstream 215844 18611284 ~ 18614191 (+) True G1784381
TU2042925 lncRNA downstream 335729 18731169 ~ 18731408 (+) True G1784458
TU2042926 lncRNA downstream 336794 18732234 ~ 18732519 (+) True G1784459
TU2042927 lncRNA downstream 338116 18733556 ~ 18733779 (+) True G1784460
TU2042933 lncRNA downstream 346515 18741955 ~ 18742191 (+) True G1784466
XM_036958912.1 mRNA upstream 6020 18309897 ~ 18386130 (+) False kalrna
XM_021579178.2 mRNA downstream 6441 18401881 ~ 18404554 (+) True LOC110501534
XM_021579179.2 mRNA downstream 11269 18406709 ~ 18410510 (+) True LOC110501535
XM_021579183.2 mRNA downstream 200938 18596378 ~ 18609528 (+) False LOC110501537
XM_021579182.2 mRNA downstream 201176 18596616 ~ 18609528 (+) True LOC110501537
LOC110502061 mRNA downstream 544514 18939954 ~ 18951668 (+) False LOC110502061
TU2042522 other upstream 169424 18101931 ~ 18222726 (+) True kalrna
TU2042125 other upstream 480924 17909900 ~ 17911226 (+) True G1783691
TU2042053 other upstream 649715 17741757 ~ 17742435 (+) True G1783622
TU2041484 other upstream 1095791 17295953 ~ 17296359 (+) True G1783087
TU2040736 other upstream 1350477 17006034 ~ 17041673 (+) True G1782390
TU2042946 other downstream 370879 18766319 ~ 18767140 (+) False G1784476
TU2042944 other downstream 371018 18766458 ~ 18767140 (+) True G1784476
TU2043879 other downstream 791048 19186488 ~ 19197714 (+) True LOC110501548
TU2044113 other downstream 1175140 19570580 ~ 19572439 (+) False ybey
TU2044159 other downstream 1221555 19616995 ~ 19627760 (+) True LOC110501568

Expression Profile