RNA id: XM_021579179.2


Basic Information

Item Value
RNA id XM_021579179.2
length 2837
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110501535
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18406709 ~ 18410510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAGAGAAGATATAAATAGTTTTTAGGTAGCCTAGCACTCTCTTTGCCTGTGAACGAGTCGGGAATTATTTTAAATGCAGGAGGCACTGCACTTGTCTTGGCTTCTCACCATCGATTTACTGTGCGCACATAGGAATGGTCTCATTTTGTAATCAGATGTATACAATTATATAGGTATTTCTGTGGGATTGCTTTACAGTCAATATACTTTATCTAAAGTGTTATTGAAGGGTGGAATCCTAATTTGAGATTCGTGCATAACTACCACCACTGACAATATGATTTATGCGCACATGTGTCAAATTATGATTCGAAGAGTTTTAGAGCCTATCGTTTGTTTGAATTGACAAATATTCATTTGAAACTATAAGGACACTATAAGGACATCAAAACTGGAACTATAACTTGGAACACACCAGAACGGGACAATAATATTTAATTCAAACCTTTCGAAAATGATCTTGCATTCGAGGCTTGTTTTAAGTTGCCTGCGACCTGTTTAAAGACTCAGGCAGCTAAAGCAAGTCTGGGACGCCAGACACAACTCTTCTGAGAGCAGCAGCAGCGGAACGCGTGGAGAGAGAGGCGTGGTGGGGACGTGGAATATTATCGCCTACTCCATGAGTCATATAATAGCCTTGCTTAGCAGTCACATACATACTCTCTGGTCTCATATCGTTTGCTCCTGTTATCTTTGCCCTAGACAACTATGACTTGATAACACATTTTCGTGAAAATATTACATTTGCATCAATGCATGTTGATTTACAAGAAATGTAATATGTTGTGTTTATTATGTGCATTTAATTATTGTCCGGTGTTGTGATTAGAAATACGTATTATGAAGTTGGTAAAAGTATCATAAAACGTGTACAAAATCTACAATTTGCTGTACATTTTGCATGTCCATGGCATATGACAGCTAATAAAGTGTTTGCCTTAAATACTGTCATTCCCTTTTTATTACACTTACTCACTGCATATTTTCACAGCTGATCTCATTAATGTTATCTGCCCACAGTGTATATTTCTTCATATTCCTTAGGCTAGGACTAGGCCACGTTTATATGGATACAGTTATTGTATTTCAAGGAAAATCTTAATAAAGAAAATGCATTGTCATTATTATAAAAATACTTATTATTATTTCTTATTAGTATACGAAGCCTCTGTATTATTAGGCATATTCATGATAATGGGTATGTCTCTGAGTATGATTGGGATTccttatattattattactaggcctattgttgttattattatttgtaggcctattgttgttattgttatgctATTATTAGGCTAATGGGCTTTTTGTGGATCATGGATGGGGTCTTGGGAGGCAGCTTGGACGCTCGTCCTTGCAGGATTGCTTTTGATTAATAGAGAATTGTTCTCTCGTGGCTTTACATCGATAAACATAATTTAAGATATTGTTTTAGATTCAGCCTCATTACACTCCGATTGTATATAGCCTTATGCCTATAAACATAAGGTCGGTGATACATTTTTCTTGTTTTCCCAGGTGCATTGAGGCGTGTTTTTAAGGTCAATATTATTTTCATACATGAAATAGGCCTCTGTGTTTGCAAAGAGGTAAAGAGGCGGAAAAGAGAGGGGATCTGAACTGGTTTTCCATGTCAAACACTTCAATTCTCCATAGAAACTCTGATCTTAACGCGGAAACTTTATTAAACCCTGATGGTGGATTGATAAGACCGAATTTCTCTCGGATCTTTTTATTGTGGAGACCGGGGAGAGATGACAGAGGCAAATTGCTCTTTTAATTAAAGCAATGCACCAGAGGAAATTGCTGTCTGAATATTGTCTCCGAGATGGGGTTTGTGACAGTTGCCTGGAAACTTCAATCTGTCCCACATTTATTCCAGATCACAGTTATGAGATAAAGTTTAATAAAAATCTTTGCCCGAATGAAATCCAACCCTTTCTTGAACAACAGCTACAATGAGACAGAACTGCGGAGGAAACCTTATGTTTAACATGTATCTCTCAGATCCAACAGAAAATCTGTTGAAAGAAAGCAAAGGTGCATCCTGGAGTCCCATAAACACAGGAGTGCAAAAAGGCAGTGGACAGATTCAGCTATGGCAGTTTCTCCTCGAACTCCTGTCAGACAGCGCCAACATGTCCTGCATCGCCTGGGAAGGGACGAATGGAGAATTCAAGCTAATTGAACCAGATGAGGTGGCCCGGCGATGGGGCGAGCGCAAAAGCAAGCCCAACATGAACTACGACAAACTCAGCCGCGCATTGCGGTACTACTATGACAAAAACATAATGACAAAGGTCCATGGGAAGCGATATGCTTACAAGTTCGACTTTCACGGGTTGGCTCAGGTTTGTCAACCCTCATCAACAGAGCAAGCTCTTTATAAATTCCAGAGTAATTTTGCCCCCATTCCCTTTTCAGGGATTTCAAAGCTAAACCTGGTTGGTCCAGGCGTCGGTTCGTCTGGATTCTCTTATTGGCCGGGGTCGCCGCCGACTCTCTACCACAGTCACAACCTCCAACCCCCGGGACCGTTTGGTTCTGTGTCTGCCTCGCACATCAGCTGcgtcaacaacatcaacaacctGAATAACATCAATAACCACTACAATTGACTCCTATTAACTCTACCAATAACGTTGTTAAAAAAGGCCTAATCATAATTCACAATGGTAGCTGAAGGCGCGCGCCTTTTTAAATTAGGTCTCTGAATTATGATTTTTCCTCTTGTggaccaacatttttttttaaatcctcaataAATGGGCCTATGGGAAAATCATGAATCATTTATGGAGTGTTTAAAATTTAAACACatgcttt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09437 FEV; ETS oncogene family protein FEV

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2042489 lncRNA upstream 347573 18058334 ~ 18059136 (+) True G1784035
TU2042488 lncRNA upstream 348582 18057916 ~ 18058127 (+) True G1784034
TU2042487 lncRNA upstream 349834 18056670 ~ 18056875 (+) True G1784033
TU2042485 lncRNA upstream 354109 18052289 ~ 18052600 (+) True G1784031
TU2042475 lncRNA upstream 364573 18041937 ~ 18042136 (+) True G1784021
TU2042848 lncRNA downstream 200774 18611284 ~ 18614191 (+) True G1784381
TU2042925 lncRNA downstream 320659 18731169 ~ 18731408 (+) True G1784458
TU2042926 lncRNA downstream 321724 18732234 ~ 18732519 (+) True G1784459
TU2042927 lncRNA downstream 323046 18733556 ~ 18733779 (+) True G1784460
TU2042933 lncRNA downstream 331445 18741955 ~ 18742191 (+) True G1784466
XM_021579178.2 mRNA upstream 2155 18401881 ~ 18404554 (+) True LOC110501534
XM_021579177.2 mRNA upstream 11269 18391837 ~ 18395440 (+) False LOC110501533
XM_036958918.1 mRNA upstream 11269 18392150 ~ 18395440 (+) True LOC110501533
XM_036958914.1 mRNA upstream 20579 18313062 ~ 18386130 (+) False kalrna
XM_021579183.2 mRNA downstream 185868 18596378 ~ 18609528 (+) False LOC110501537
XM_021579182.2 mRNA downstream 186106 18596616 ~ 18609528 (+) True LOC110501537
LOC110502061 mRNA downstream 529444 18939954 ~ 18951668 (+) False LOC110502061
LOC110502062 mRNA downstream 576513 18987023 ~ 18988418 (+) True LOC110502062
XM_036958922.1 mRNA downstream 671178 19081688 ~ 19115216 (+) False stat4
TU2042522 other upstream 183983 18101931 ~ 18222726 (+) True kalrna
TU2042125 other upstream 495483 17909900 ~ 17911226 (+) True G1783691
TU2042053 other upstream 664274 17741757 ~ 17742435 (+) True G1783622
TU2041484 other upstream 1110350 17295953 ~ 17296359 (+) True G1783087
TU2040736 other upstream 1365036 17006034 ~ 17041673 (+) True G1782390
TU2042946 other downstream 355809 18766319 ~ 18767140 (+) False G1784476
TU2042944 other downstream 355948 18766458 ~ 18767140 (+) True G1784476
TU2043879 other downstream 775978 19186488 ~ 19197714 (+) True LOC110501548
TU2044113 other downstream 1160070 19570580 ~ 19572439 (+) False ybey
TU2044159 other downstream 1206485 19616995 ~ 19627760 (+) True LOC110501568

Expression Profile