RNA id: LOC110502060


Basic Information

Item Value
RNA id LOC110502060
length 889
RNA type mRNA
GC content 0.45
exon number 1
gene id LOC110502060
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18427142 ~ 18428030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGAACGGTGCTCTCCATATACCCTACAACAAAGAATGAGGCTATTCTGGATGAGGGGGGGACCATGCAATTAAAACAGGGGGCGTAAAAAAGCAGTCCATGCTTGTCTCAGCTCTCACATTTAAGAAAACGGTTTTCGAATCGACCAAGAAAAAGAGTCGCAAGAAAGTCATCCCAAATGCCTCACAGGTGAACAACAGCCACGTAAATCAGCTTAATAATGAAAATAACAAGAAATCCCTGCAATCGAGTACGGATGGTAAGAAAGGACCACTCACTGTACCAGTGCCGATGGTTACTACCCAAAGTCTTCAACCCAATCAACCCCAGGTCCCCTCTAAGAATGTGGAACTCTTAGCTGTCCAAAAGCAACCTAGCAAAGTAGACCTCCTCTCACCGAGGTGTGTGATTATCCAGGCATCGACTGGGGAGCTGTTACGCTGTCTGGGAGAATTTACATGCCGGAGATGCTATAAAGTGAAGCTCACTTACAGTGAGGTCATTATATGGTTCCGAAAAGTCGACCAAACCCTTCTCCTCCAAGGCTGGCAGGACCAGGGATTCATTACAACGGCTAACTTGGTTTTGTCTACCTGCTCTGTAAGGTATCAATACCCGATGATCTCGATAGCGCACCCGAAGTCCATAGTGTCTTCCTGCTCGGTCTCTATTTATCCTACTCGTACATGGGTTGCGAGATATCTTACCCTCTGAAACCCTTCATGATTGTGGCCAATGACGATAATTTATAGGATAGTTCTATGAGCATCATCAATAACACGAGTGCCAAAATGTTGCAGTTAAATGCAGACCCTTACTTTTTCACGGAGGTGTTTCAAGAGATAAAAGATGAAGGAAAGTCTAGGGACAAAGACTTGGACCATTAA

Function

GO:

id name namespace
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043306 lncRNA downstream 67918 18358564 ~ 18359224 (-) True G1784829
TU2043219 lncRNA downstream 195294 18231592 ~ 18231848 (-) True G1784742
TU2043211 lncRNA downstream 198799 18217992 ~ 18228343 (-) True G1784734
TU2043108 lncRNA downstream 373458 18053394 ~ 18053684 (-) True G1784633
TU2043087 lncRNA downstream 415212 18009924 ~ 18011930 (-) True LOC110501531
TU2043438 lncRNA upstream 88957 18516987 ~ 18517393 (-) True G1784940
TU2043565 lncRNA upstream 291271 18719301 ~ 18719533 (-) True G1785062
TU2043569 lncRNA upstream 294480 18722510 ~ 18722841 (-) True G1785066
TU2043580 lncRNA upstream 313117 18741147 ~ 18741471 (-) True G1785077
TU2043601 lncRNA upstream 354709 18782739 ~ 18783086 (-) True G1785098
XM_036959577.1 mRNA downstream 326423 18098805 ~ 18100719 (-) True LOC110502115
XM_021579175.2 mRNA downstream 339186 18009923 ~ 18087956 (-) False LOC110501531
XM_036958908.1 mRNA downstream 339186 18009923 ~ 18087956 (-) False LOC110501531
XM_036958900.1 mRNA downstream 431328 17906058 ~ 17995814 (-) False fmnl2a
XM_021579180.2 mRNA upstream 79973 18508003 ~ 18526067 (-) True wnt10a
XM_021579181.2 mRNA upstream 105566 18533596 ~ 18569048 (-) True LOC101268914
XM_021579184.2 mRNA upstream 189496 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA upstream 189496 18617526 ~ 18767708 (-) False LOC110501539
XM_021579186.2 mRNA upstream 189496 18617526 ~ 18767708 (-) True LOC110501539
TU2042341 other downstream 523191 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 523191 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1363694 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1363757 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2601928 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 747537 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 747537 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 893158 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 1228252 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1917669 20345699 ~ 20346014 (-) True G1786832

Expression Profile