RNA id: XM_021579181.2


Basic Information

Item Value
RNA id XM_021579181.2
length 3952
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC101268914
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18533596 ~ 18569048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACACCTGGGTAAACTTGTGCGCTTTGACTACTACCCGTGAATCGAAAATGAACAACCATTTCGATGCCGAACAACGCACAAATCCAACCAATGTTACCAAGGCCAATACAATTGATTACTTTTGCGTAATAACGTCAACATTAATTGTCCACACGGAATCTGCTGGGTCATTGGGTTTACTCTTCTGCCCAAGGTCTGGCTGCATCCCACCACCCCCGGGCTGTAGTATCCTTGCTGCCAGATTAAAATCGCTGTGCTATTGGAATTTGTGTGTTTTAGTTAAAACGTGCTTGTCACTTCTTCCTCTGGCATTTGAGTTTAGAATCTGTCTGCCAGAGAAAGGACTATGAAGAGGTTAACACATTTCACCACGGATGTTTCTTCCCTCTTGACCGAGTAATCGAACGTTAGTGATGCACCCAAAGAGGTGTTCAATGGATTTTTTGCGCGTTTCGTGGAGGTTCTAAATCCTGTAGATCACCAATTTTGCAGGACTTCCCaagaaaacaacaacacattaatTGACGGCTCTAATTTTTGGacgtaacttttttttttttggtaggaTACTCTCATCATGACGATTCTATTATCTCGGACTCAACTTGCCCTGTTTTTCATTCTCCTATGTCCGGTCAATATCATTGGGTTATGGTGGGCAGTGGGGAGCCCTCTCGTTATGGATCCCAACAGTATCTGCAGGAAGACCAAGCAACTAGCGGGAAAGCAGGCCGAGCTGTGCCAGACCCAGCCAGAGATCGTCCACGAGGTCGCCAAGGGTGCCAAGCTGGGTGTGCGGGAGTGCCAGTACCAGTTTCGCTTTCGCCGCTGGAACTGCACCAGTCAGAACAAGTACTTTGGCAAAATACTCCAACAAGACATCCGGGAGACAGCGTTCGTGTACGCCATCACGGCAGCTGGGGTGACCCACGCGGTAACGCAGGCCTGCAGTATGGGGGAGCTGCTGCAGTGTGGCTGTGAGGCGACCAGGAGCAGGGCTCCCCCCCGGCCTGCCTCcttctccaccaccacctctgtCGAAGGAGTCAAGTGGGAGTGGGGCGGCTGCGGAGACGACGTGGAGTTTGGCTACGAGAAGTCCAAGCAGTTCATGGATGCCAAGAGGAAAAAGGGCAAGAGTGACATCAGGACGTTGATCGATCTCCACAACAACGAAGCAGGACGACTGGCGGTGAGGAATTATATGAGAACTGAATGTAAATGTCATGGCCTGTCCGGGTCTTGCACACTCCGGACCTGTTGGAAAAAGATGCCTCACTTTCGGGAGGTGGGTGATCGCCTGCTGGAGAGGTTTAATGGAGCTTCCAAGGTGATGGGAGGCAACGATGGCAAAACCCTGATTCCTGTGGGCCAGAACATCAAGCCTCCGGACAAACAGGACCTGATCTACTCGGCCGAATCGCCCGACTTCTGCTCACCCAACAGGAAGACAGGCTCGCTGGGCACGCGGGGCCGCATGTGTAACAGCACAGCCATGGACGTGAGTGGCTGTGACCTGCTGTGCTGTGAGCGTGGCTACCGAGACGAGACGGTGGTGTTCGAGGAGAACTGTCTCTGCCGCTTCCACTGGTGCTGCGTGGTGCAGTGTAAGAAGTGCTCGGTGAGGAAAGAGCTCAGTCTCTGTCACTAGCATTACCACAGAGGAACTTGGTTGGTTTCAGGCCTCTTCAGCCTCACAGGAATGATGCACTGAGATCAGGCTCCCACAGTTCACTTCAGGAGCACGCTGAAAGATGAATGTCTTATCTAGGATCATCTTGGACAGACAGCTGGAGGAACTCTCCTCTCAAGCTGTAGAACAGTCCAGAATGGCCACTACTTCAGTGCTCACCACATAGAGCTCTATGACCCTGAACTTAGGCTCTTTTTAAAAGTTACATTTCAGCTCCCAGAACTTTCTAGAGCAGAATGCTGGGTCCCATGTCATATAAGACAATCAGAAAGTTTGGTACTATTCTCAGTCATCTGTACAGAGCTGTTAGCCTctaaagcagtggttcccaaatatGTTTGCACAGTGAACCACCCACCACAAGTCTTTAGAATTAGCCATTGACCCAGAAAATAGCATAACAAGTGTTTCTAGCCTCAAACCCAATGCTAAGACCCACTAAGAACGTGGGGCCTACAACCCATCATTAGGGAAAAACGTTGCATAGTCAGTTAACCATGTATCTACGAGGGGTGACTATTGTAAAGAAAACATAATGACTTTGCATGTGGAAAATACAGTCATGGTGATAAAATATTTTCCTATGTAACATAAATGTCCTTCATGTGAAAGGTAAATGGACATGCTCAACATGGAATACAGGTTTTTTGTATCTAGcacaaaatgtataaaaaaggGAAATGTGGGGTTGTGTTTTTGGAAGACGAACCGAACCCCATCTTGTTTCATGGTGAGGAGCTGAACTGACATCCGAGACTATTATTTATGAAAATTTTTATGACTAGACTACTCATAGTGATAAGGTGAGGAACGTGCCTACCGTCTCTCTGAAAAGCACTTTGGATGTTGGAGCTATCTATGTAAGCCATTTGTTACATTTCTGGTTTTGTTTGTTTGAGTAGTTTGCAAATGGAAAAATATGTtcagactgtttttttttttttttgtatggtATCGAGAAAGTATGATATTATGTTTATCTGTTTAATATAAAGGGCTTTTGTAATGCACTTTCAATTAAAGCATTTGTTACGTTAAGCTTTGTTAGGTATAGTCATGTTGTGCAGAATAGCCAGTCACAATCACATACAATGCTGACAATGAATCCATGCATTTGTCTCTTTGATAAGTCAACTTGCTGAAGTGAGTTGGAAGTTAGAAAGACCATTTATTTTTACTCTCTCCCTAAATTCTTTAGAATAGGCAAATAAGATCTTCTTgcttgtttttttggggggggggaataaagCATTCACTGTGATTAATAATAATAACGATTCCTCATGAGTTGTGTTGGTACCCAAACACGCTGTACATTTTCTGTTGATGTGCATAGCTATAAGTTATTGAAATGTACTGTGTCGTACCCTTCTTTTAGAgtacgttttttgttgttgctactTACCTTTCAGGGATCTGTAAGACAAGAAACCATTGGCAAAACAAAGAGAGAGTACGATGAGAGATCACATCGCTATAAtttattgccaatataccatggtttATGACCAGATGATTTCTGGCCAGAGTTCATAGTTCATATCGTTACCATATCGTTACCATGACAGTGACTACACACACCATGTCAGTGACTACACATCTGTGGAATCAGCAACATTTTGTGTTTAATTTAATCTAAATACAGTTTTTGTACAAAAAAAGAATATGACTTTAAGGGAGAAAGACTTGGTAAAACTGAACTATTCTGACTGAGATTTACTACAATATTAGGCATTCTTTACATACAGTTATGTTAGCAGTAGAACTGGTCACTTTACCATGTTAAGTTTGAGTTGTAGTCGACCAAATTATGAAATCAGACCAAATGTGACATTTCATATGTGAGATATATGCATGACTAAGCAAGGTCTTGGCCTATCCATTCCCCATAGAACAACTTTTGGACTTGTTGGGCTGCCAGGAGCGTTTTACTGTTACTGTATGTATGTTTAAACAACCCTTTTGTCAAAATGGAAGAAGGTTGTTTTGTTGCTTTCTGGATTCAAAGCAAGACACAAGTTTAGAAAACAGGATTTTGTCATGGAATGTTGAATGATTTAAAGATCATTTCTCATTATTTGTTTGGATTCTTAGACATCATTTTGATATTCTCATACTTAGTTGCTCATTGAttaaactattattctacaaagttcATTTCATGTCCATTTAGTTACTTTCCAGTTACAGTATTTATATAAATTTAAATAAATTGGCAAATGAGTTTCTGCATTTACTATACAAATAAAAAGTAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00445 WNT6; wingless-type MMTV integration site family, member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043438 lncRNA downstream 16203 18516987 ~ 18517393 (-) True G1784940
TU2043306 lncRNA downstream 174372 18358564 ~ 18359224 (-) True G1784829
TU2043219 lncRNA downstream 301748 18231592 ~ 18231848 (-) True G1784742
TU2043211 lncRNA downstream 305253 18217992 ~ 18228343 (-) True G1784734
TU2043108 lncRNA downstream 479912 18053394 ~ 18053684 (-) True G1784633
TU2043565 lncRNA upstream 150253 18719301 ~ 18719533 (-) True G1785062
TU2043569 lncRNA upstream 153462 18722510 ~ 18722841 (-) True G1785066
TU2043580 lncRNA upstream 172099 18741147 ~ 18741471 (-) True G1785077
TU2043601 lncRNA upstream 213691 18782739 ~ 18783086 (-) True G1785098
TU2043735 lncRNA upstream 376289 18945337 ~ 18945543 (-) True G1785218
XM_021579180.2 mRNA downstream 7529 18508003 ~ 18526067 (-) True wnt10a
LOC110502060 mRNA downstream 105566 18427142 ~ 18428030 (-) True LOC110502060
XM_036959577.1 mRNA downstream 432877 18098805 ~ 18100719 (-) True LOC110502115
XM_021579175.2 mRNA downstream 445640 18009923 ~ 18087956 (-) False LOC110501531
XM_036958908.1 mRNA downstream 445640 18009923 ~ 18087956 (-) False LOC110501531
XM_021579184.2 mRNA upstream 48478 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA upstream 48478 18617526 ~ 18767708 (-) False LOC110501539
XM_021579186.2 mRNA upstream 48478 18617526 ~ 18767708 (-) True LOC110501539
XM_036958921.1 mRNA upstream 384576 18953624 ~ 18961857 (-) False LOC110501540
XM_021579187.2 mRNA upstream 384576 18953624 ~ 18962508 (-) False LOC110501540
TU2042341 other downstream 629645 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 629645 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1470148 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1470211 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2708382 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 606519 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 606519 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 752140 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 1087234 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1776651 20345699 ~ 20346014 (-) True G1786832

Expression Profile