RNA id: XM_021579186.2


Basic Information

Item Value
RNA id XM_021579186.2
length 3485
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110501539
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18617526 ~ 18767708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGATTGATTGCTAGGAGTTACCTGCTGCTCGTTTCTACTTATCTCATTCCTCATTATTTTTCAAATTAGGCATTCTCTGGGGAACCCGAGGGGGGTTGGCATTAAAAACCAGTGACCCACTGAAATTCACATCAAGCACCGGATGTTTGGTAGAACAACCTTTGAAACCAACTTATTACGGTCAAGGAGTAAAACAGCGTTACAAACAAGTGGATTAAGCAGGAGCAGGCTATGGGAAGATCAGGGACGATCAGGGACGGGGGAAGTTGCTGCTCGCGCCAGTGAAGAGGAAATAATCACAATGCTGCCTTCTCATGAATCATTAAGTAGCCCCATGCCTCTTAGCTCGACTCAAAACGCTGCATTTTCATCTATGGGTCTGAAAGGGTGTTTTTTGACAGCAGTATTACTGCTGATAAGCAAGACTCTGCCAGCTGATCAAGTACTGAGACAAGCATCCCGAGCAGCAGCTACACAGCAGCACTAGTCACTATGAGCAGTGGCAGTCAGTAGCAGCAGCACTAACAGCagaagcagcagcaacagcaactCTCTCGtgccttttttcttcttctttgtgtAGTTATAATCTGTTCTGAGATCAACGGCCAGGGAAGACGGCACAAGTGGATCAGGGCTGATAGCTGTCATCAAAACAACCCCAAACGCAGACCTGGCTGCCCACATGCCGATCGAATTTGTTTGCAAAATCAAATTTGCAGAGGAGGATGAGAAGCAGAAAGGCAAACAGGATGGGGACAAGGAGAGTCTGATTGAGGAGAGCTGCACACCTCCAGCTAAGGACCTGGTTGGCTTCGCCAACTCCAGCTCTCTCCATGGGATTAACCACATCTTTGTCTCGGGGCGCCTGGGCATTCGGCAGACCCTCTGGGCACTTGCCCTTTTGGCTTCTCTGGCACTCTTTTTGTACCAGGCAGCAAAGTGTGCCATCTCTTACCTGGAGCACCCTCACGTCACGGCTTTGAATGAGGAAGCAAGCCCTGAGATGGTCTTTCCTGCTGTGACCATCTGCAACATCAACCGCTTTCGTTTCTCTGCTCTCACCGATGCCGACATCTACCACCTGGCTAACCTCACAGGTCTACCTCCAAAAAACCGAGATGGCCACAAGCCCACTGATTTGGACTATCCTGCGCCCGACATGCAGGACATCTTCAACCGGACGGGACATCAGCTGGATGAGATGCTGAAGAGCTGCAACTTCAGTGGACAGAACTGCTCTGCCGAGGACTTCTCTGTGGTCTATACAAGATATGGAAAATGCTACACTTTCAATGGGAACAAGTCGACGTCCAGGAAAACCAAGCAAGGTGGAATGGGAAATGGGCTGGAGATTATGTTGGATATCCAACAGGATGAGTATCTCCCCATCTGGAAAGAGACAAATGAGACGTCGTTAGAGGCAGGGATCCGCGTGCAGATCCACAGCCAGGATGAGCCTCCCTACATCCACCAGCTGGGCTTCGGAGTCTCCCCGGGATTCCAGACCTTTGTTTCATGTCAGGAACAAAGGCTGACCTACCTGCCCCAGCCCTGGGGGAACTGCCGCTCCACCAGCGACCAGATGATCCCGGGATACGACACCTACAGCATCAGTGCCTGCCGCCTGCGCTGcgagaccagggaggttctccgGGAATGCAACTGCAGGATGGTACACATGCCTGGAACTGCTGATATCTGCACTCCCAGTAACATCAAGTGTGTCGACAAGGCGCTTGCCCTTCTCCAGAAGAGCACTGGGGACAGCTGTCCCTGTGAGACACCATGTAACCTGACCCGCTACGGCAAGGAACTCTCCATGGTCAAGATCCCCAGCAAGGGCTCCGCTCGCTACCTGTCCAGGAAGTACGACAAGTCTGAGGAGTATATCAGAGACAACTTTCTGGTGTTGGATATCTTCTTTGAGGCTCTTAACTATGAAACAATTGAACAAAAGAAAGCGTACGATGTTGCAGGTTTACTAGGTGACATTGGAGGCCAGATGGGCTTGTTCATTGGAGCCAGTATTTTGTCCATTTTAGAAATATTGGATTATGTTTACGAGGTGATAAAGCACAGGCTGCAGCGTCTGCTGAGGCCACAGAAGGATGAGAAGAAACAACAAACGGCCACTGTTGCCACTGTGGATCTGCAAGATATGAAAGCCAATAAGGAGTCCAGTGACATGACCAGAAGTCACCCAGAAGGAGCCTACGCCAATACGATTCTACCAAATCACCATCTCCCCCACCACCAAGGACAGCCACATGGAATGTTTGAGGACTTTGCCTGCTAGACCCAGTGGCCATCTTTCCACCCTGATGACAATAAAATGACAATAAAATATGTCCTCTCAGACCCTGGGACCTCAGTTCTATACCTTTCTTGCTGTCACCAGTGGAAAAAGCTACAGCCAAAGTCGAACACCAAACCTGTGCTGCTAATAGACCACTTGTATGTAAGCACAGATTGGACCCCACAGTACTGTCCGGCTGGAGACGCCCACCTTCGATCCCTATTCTGGTTATTTTGGTACATGGTCACCACATGGGAACAAGACAAGGACTGCATGTCATCTTGAGCCATCTTGATATACTCACCTCCAATATCTTGATGTATGTACCACTCTTAATCTTGTTTCCGCCAAACTATTTGTCAATAAGTTCTCACTTACTATTTTGAATCATATCATTGTAAATTATGTAATTATTTACTGAGATATTATAATTTCCACTTTATATTGTATACAAGATGAGACTCGATAAGACAAGTGGTCATATTCAATCTAACCATTATATAGAGATATCAGCAAACAAAATCAGAGAAGATATTACACTGATCTTTTAGCGAGTTAAACCCCTACTACACTTACTTTGATGATAGGGCCCgtactatatacacacactgtgtCTCGTTTATAGTAAAGGTGTGTTAGAGAGTAGTAttatatatgtactgtacatggttCCAACCTGAGTACAAAGAGAAAGCACTGTTTTAAATGGATAATGATTCATTTAATATATAACTAATACAAATGTTGGTCATTTATTGATATATTTTAGagaatattattttttaaataatatgatTGTAGCTTCTTCTTGCTTATTAGTGAAACCAGTCGGAAAGGTGATGATTGGAATTGCATTGCTCCAGGCCATGAATATATTTTTCAGATTTACTGACTTGGGTAAAGGTGAAGTTCTTACAGCAATTACGGTGTCCAAATTAGGACAGTACTCAAAGGTAAGGAATAACAACAAGCGTGACATGGATGAATCATTTGGGCATTCTGCAAATGCTGTGGTCATTTCAATGACAAAGTCCTAATTAAGGTTGCTTAAGGTTATACGGTgcctgcgaaagtattcggcccccttgaactttgcgaccttctgccacatttcaggattcaaacataaagatataaaactgtttttttttgtgaagaatcaacaacaagtgggacacaatcatg

Function

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04831 ASIC4, ACCN4, BNAC4; acid-sensing ion channel 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043438 lncRNA downstream 100133 18516987 ~ 18517393 (-) True G1784940
TU2043306 lncRNA downstream 258302 18358564 ~ 18359224 (-) True G1784829
TU2043219 lncRNA downstream 385678 18231592 ~ 18231848 (-) True G1784742
TU2043211 lncRNA downstream 389183 18217992 ~ 18228343 (-) True G1784734
TU2043108 lncRNA downstream 563842 18053394 ~ 18053684 (-) True G1784633
TU2043601 lncRNA upstream 15031 18782739 ~ 18783086 (-) True G1785098
TU2043735 lncRNA upstream 177629 18945337 ~ 18945543 (-) True G1785218
TU2043718 lncRNA upstream 185579 18953287 ~ 18955894 (-) True LOC110501540
TU2043748 lncRNA upstream 206383 18974091 ~ 18974304 (-) True G1785231
TU2043750 lncRNA upstream 207447 18975155 ~ 18975497 (-) True G1785233
XM_021579181.2 mRNA downstream 48478 18533596 ~ 18569048 (-) True LOC101268914
XM_021579180.2 mRNA downstream 91459 18508003 ~ 18526067 (-) True wnt10a
LOC110502060 mRNA downstream 189496 18427142 ~ 18428030 (-) True LOC110502060
XM_036959577.1 mRNA downstream 516807 18098805 ~ 18100719 (-) True LOC110502115
XM_036958908.1 mRNA downstream 529570 18009923 ~ 18087956 (-) False LOC110501531
XM_036958921.1 mRNA upstream 185916 18953624 ~ 18961857 (-) False LOC110501540
XM_021579187.2 mRNA upstream 185916 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA upstream 185916 18953624 ~ 18962508 (-) False LOC110501540
XM_021579191.2 mRNA upstream 222812 18990520 ~ 19021140 (-) True LOC110501541
XM_021579192.2 mRNA upstream 266757 19034465 ~ 19036509 (-) True LOC110501543
TU2042341 other downstream 713575 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 713575 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1554078 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1554141 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 2792312 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 407859 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 407859 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 553480 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 888574 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1577991 20345699 ~ 20346014 (-) True G1786832

Expression Profile