RNA id: TU2043718


Basic Information

Item Value
RNA id TU2043718
length 2192
lncRNA type sense_over
GC content 0.38
exon number 3
gene id LOC110501540
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18953287 ~ 18962508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacttagatccgtctgtccataacacttttttccaatcttcctctgtccagtgtctgttattttgcccatcttaatgttttatttttattggccaatctgagatatgtatttttctttgcaactctgcctagaaggccagcatcccggagtcgcctcttcactgttgacgttgagactggtgttttgcgggtactatttaatgaagctgccagttgaggacttgtgagatgtctgtttctcaaactagacactttaatatacttgtcatcttgctcagttgtgcaccagggcctcccactctttatattctggttagagccagtttgtgctgttcagtgaagggagtagtacacagtgagatcttcagtttcttggcaatttctcgcatggaatagccttcatttctcagaacaagaatagactgatgagtttcagaagaaaggtctttgtttctggccattttgagcctgtaatcgaacccacaaatgctgatgctccagatactcaactagtctaaagaaagccagttgtattgcttctttaatcagaacaacaattttcagctgtgctaacataattgcaaaagggttttctaatgatcatttagctttttttaaatgataaacttggattagctaacacaacgtgccattggaacacaggagtgatggttgctgacaatgggcttctgtacgcctatgtagatattccattaaaatctgcctttttcagctacaatagtaatttacaacattaaaaatgtctacactgtatttctgatcaatttgatgttattttaatggacagaatgtgcttttctttcaacttttgaacggtggtgtatatACTATACAATTCAACTCCTCAACAGTCAAAGACACTACatgctacaacaacaaaaagacaatAAATGATACCTAATAAAACATCTAAATAGATCTCTTTCTATAGTTGGGTCCCAACGTCTCCATAGGCACAGGTGTGACCATCGGGGCTGGGGTGCGAGTGAGGGAGTCCATTATTCTCCATGGGGCTACTCTACAGGATCACAGTTGTGTGTTGAACTGTATAGTGGGATGGGACAGCACTATCGGCAAGTGGGCCAGAGTTGAAGGAACTCCCAGTGACCCCAATCCAAATGACCCCTATGCCAAAATAGATAGTGAAACACTCTTCAGAGATGGAGAACTCACACCATCAATCACCATTCTTGGTTGTAATGTAACTATCCCGGCCGAGGTAATCATACTCAACTCAATTGTTCTGCCATACAAAGACCTCAACCGGAGCTTCAAAAACCAAATTATATTGTAGTTAATTTTCTGTGTGCGCTGGTCATTTAGTGTCAAACCAAATGAAGGATTTTAGCTTGAAGATCAATGCCACTGCCTCTGGGTTATTGTACATAAGATAAATATATAAAAAGGAGATGACACTTATTTAGGTGTTTGGAAAGTTCTAGATTTGATattgtgtacccccccccccccctttatgcATTAACTGACGTTACCATCATTTGAGATGCTTTGGGAGGCTGATGATGAGCGTTGGTTGGTTTGATTACTTCGACACGTCTGAATGTCATCCCACCACTTTTATGAAACGTACGtttcataaaatgtattttaactgTTACATTTCTGCACTAGCCCTATAATGAGCTCTGTATGATGGATTCACTACCATGTAAGGGGAATTATAAAATAATTATCATATTTTGGCATAGGGTTGCTGGCATTACTTATTTTAGGTGGTGGTGCTAACCTTTTGTTACTCAAATTGCGCCCTGAAAATGTAAACTAATCAGCTGCAGACTTTTATAAGATTGCAAAATAAAAGGAATTGGTTACGAACTGTTTAATTATGAGTGGTAATTTGGGGGCATTTCAACACGAGTGCTTTGATTTAAAACGTGACCATTTTAATTGCAAGAGTTATTCTGACATTCTTCTCTGAAATACATTGTTGACCGTCTCATGTTTCTTTtgattaaaggggcaatctgcaaaagtccaaaaatggatgtaccaatcgCCGTTTTCCACTTTTAAATAGCAATCAAGAAATGTTTGCTTGAAATTTGAACATAACAGGTGACCTGGAAATTCTGTCCTTCGATTCTGTACTTTGTTATTTGTGACAATCATAATGGGATATAGTTAACCATAATAAAATTTTGTTCCTGTG

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043735 lncRNA downstream 7744 18945337 ~ 18945543 (-) True G1785218
TU2043601 lncRNA downstream 170201 18782739 ~ 18783086 (-) True G1785098
TU2043580 lncRNA downstream 211816 18741147 ~ 18741471 (-) True G1785077
TU2043569 lncRNA downstream 230446 18722510 ~ 18722841 (-) True G1785066
TU2043565 lncRNA downstream 233754 18719301 ~ 18719533 (-) True G1785062
TU2043748 lncRNA upstream 18197 18974091 ~ 18974304 (-) True G1785231
TU2043750 lncRNA upstream 19261 18975155 ~ 18975497 (-) True G1785233
TU2043767 lncRNA upstream 27069 18982963 ~ 18983233 (-) True G1785249
TU2043774 lncRNA upstream 32022 18987916 ~ 18988130 (-) True G1785256
TU2044203 lncRNA upstream 98607 19054501 ~ 19054722 (-) True G1785657
XM_021579184.2 mRNA downstream 185579 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA downstream 185579 18617526 ~ 18767708 (-) False LOC110501539
XM_021579186.2 mRNA downstream 185579 18617526 ~ 18767708 (-) True LOC110501539
XM_021579181.2 mRNA downstream 384239 18533596 ~ 18569048 (-) True LOC101268914
XM_021579180.2 mRNA downstream 427220 18508003 ~ 18526067 (-) True wnt10a
XM_021579191.2 mRNA upstream 34626 18990520 ~ 19021140 (-) True LOC110501541
XM_021579192.2 mRNA upstream 78571 19034465 ~ 19036509 (-) True LOC110501543
XM_021579198.2 mRNA upstream 220372 19176266 ~ 19178833 (-) False LOC110501547
XM_021579200.2 mRNA upstream 220372 19176266 ~ 19178839 (-) False LOC110501547
XM_021579199.2 mRNA upstream 220372 19176266 ~ 19179265 (-) False LOC110501547
TU2042341 other downstream 1049336 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1049336 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1889839 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1889902 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3128073 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 219673 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 219673 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 365294 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 700388 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1389805 20345699 ~ 20346014 (-) True G1786832

Expression Profile