RNA id: XM_021579191.2


Basic Information

Item Value
RNA id XM_021579191.2
length 2182
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110501541
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18990520 ~ 19021140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAAACTCCTTTCCTTTGCATCAGGTCCTTCTACGACCACCAATGCATGTGGACAGATTATGTGGTGACTCTGTCTGATAATAATAGTCAAGAAACGTTTGATATCTAGCCACCTTAACTTCCCAAAATAACCATAAGTGTCATGACTAAAGACGCTGTCCAAGGAGCCGCGGAGGAGGCGGACCAGGCCCAGTCGAAGAAAGGCCTGAAGAAACAGCAGAAGGAAGCGGAGAAAGCGGCGAAGAAAGCTGAGAAGCAGGCCAAGCTGGCTGCTGACACACAAAGCACAGATGAAGATGACTTTGCCAAGGATCGGTACGGTGTCCCCCAGATGGTCCAGTCCCAGCAGAAACTGGACAGGGTGTTGGTGCGCGTCCAGAAGCTGACACCTGAGAAGGCTGACCAGCTGATCTGGGTGCGTGCCAGGATTCACACCAGCAGAGCTAAAGGGAAGCAGTGCTTCTTGGTCCTGCGTCAGCAGCAGTTTAACGTGCAGGCCCTAGTCGCCGTGGGGGAGCGTGCCAGCAAGCAGATGGTGAAGTTTGCCGCCAACATCAACAAGGAGAGCATCGTGGACGTGGAGGCGATGGTGAGGAAAGTGGAGCAGAAGATCGAGAGCTGCACTCAGCAGGATGTGGAGCTGCACATTGAGAGGATTTTTGTGATCAGCCAGGCCGAGCCTCGTCTGCCCCTGCAGCTGGAGGATTGTGTGAGGccggatggagagggagatgagGACGGAAGAGCGACGGTCAACCAGGACACCAGACTGGACAACCGAGTCATTGATCTCAGAACAACAACCAGCCAGGCCATCTTCCGCCTGCAGTCGGGAGTTTGCCAGCTCTTTAGAGACACCCTGACCAACAAGGGCTTTGTGGAAATCCAGACCCCCAAAATCATATCAGCTGCCAGTGAGGGTGGTGCGAACGTCTTCACTGTGTCCTACTTCAAAACCAGCGCCTACCTGGCCCAGTCTCCCCAGCTCTACAAGCAGATGTGTATCTGTGCTGACTTTGACAAGGTGTTCTGTGTGGGACCAGTGTTCAGAGCAGAAGACTCCAACACCCATCGTCATCTGACAGAGTTTGTAGGTCTGGATATTGAGTTGGCGTTCAACTACCACTACCACGAAGTGATCGAGTCCATCACCGACACCATGGTGCAGATCTTCAAAGGGCTCCGAGACAAGTGCCAGACTGAGATCCAGACGGTAGGGAAGCAGTACCCCAGCGAGCCCTTCAAGTTCCTGGAGCCCACTCTGAGGCTGGAGTACACAGAGGGCGTGGCCATGCTCCGGGAGGCCGGGGTGGACATGGGAGACGAGGAGGACCTCAGCACTCCAAATGAGAAGTTGCTCGGTCGTCTGGTGAAAGAAAAGTATGACACTGACTTCTATGTGCTGGACAAGTACCCCCTGGCTGTGAGGCCCTTCTACACCATGCCTGACCCCAATGACAAAAAATACTCCAACTCCTACGACATGttcatgagaggagaggagatcctCTCTGGCGCTCAGAGGATCCACGATGCCCAGCTGCTCACTGAGAGGGCCATTCACCACAACATTGATCTGGAGAAGATCAAGTCCTACATCGACTCTTTCCGTTACGGAGCTCCCCCACACGGAGGTGGTGGCATTGGGCTGGAAAGAGTCTGCATGCTCTACCTGGGTCTTCACAATGTCCGCCAGGTCTCCATGTTCCCCCGTGACCCCAAACGCTTGACCCCCTGAACGGCCATCGCCACTGGAGACAGATGCAGGACATGGGGAATCTATATCCATCTCCAATACACCAGACAGAGTTGAGAAATTAGTGCCACGACACTGAAGTGCTACTGCGATTAACAAATAGAGAATCAAGCCAGGGTACCACGGTCAACAGAATTCAGTAATAGAAAATGACACATGAAGAAATAGATTGATAATATAAGGGAGAAGGAGTCTTAATACACAATACAGAAGTGGAATATGATTAAGGGATGTGTTGGCTTAGGCTCACCTATGGATTACTTAACTTGTGTTGTATCTCTTAACActtttctatggggttgatcAACTTTGATACCAGTCGTTGTCACACTACAGAGGTATGACTAATAAATAATCATGGTCTGCTGACATTTGTTGTAATTGTTTGATGTTTTTGAAGTAAAAAGTATTAAGAACTTCAAAA

Function

GO:

id name namespace
GO:0006422 aspartyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004815 aspartate-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K22503 DARS1; aspartyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2043774 lncRNA downstream 2390 18987916 ~ 18988130 (-) True G1785256
TU2043767 lncRNA downstream 7287 18982963 ~ 18983233 (-) True G1785249
TU2043750 lncRNA downstream 15023 18975155 ~ 18975497 (-) True G1785233
TU2043748 lncRNA downstream 16216 18974091 ~ 18974304 (-) True G1785231
TU2043718 lncRNA downstream 34626 18953287 ~ 18955894 (-) True LOC110501540
TU2044203 lncRNA upstream 33361 19054501 ~ 19054722 (-) True G1785657
TU2044206 lncRNA upstream 40072 19061212 ~ 19061424 (-) True G1785660
TU2044301 lncRNA upstream 245808 19266948 ~ 19267696 (-) True G1785740
TU2044304 lncRNA upstream 259345 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA upstream 259345 19280485 ~ 19280892 (-) True G1785743
XM_021579187.2 mRNA downstream 28012 18953624 ~ 18962508 (-) False LOC110501540
XM_021579190.2 mRNA downstream 28012 18953624 ~ 18962508 (-) False LOC110501540
XM_036958921.1 mRNA downstream 28663 18953624 ~ 18961857 (-) False LOC110501540
XM_021579184.2 mRNA downstream 222812 18617526 ~ 18767708 (-) False LOC110501539
XM_021579185.2 mRNA downstream 222812 18617526 ~ 18767708 (-) False LOC110501539
XM_021579192.2 mRNA upstream 13325 19034465 ~ 19036509 (-) True LOC110501543
XM_021579198.2 mRNA upstream 155126 19176266 ~ 19178833 (-) False LOC110501547
XM_021579200.2 mRNA upstream 155126 19176266 ~ 19178839 (-) False LOC110501547
XM_021579199.2 mRNA upstream 155126 19176266 ~ 19179265 (-) False LOC110501547
XM_021579201.2 mRNA upstream 155126 19176266 ~ 19179266 (-) False LOC110501547
TU2042341 other downstream 1086569 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1086569 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 1927072 17057122 ~ 17063448 (-) False LOC110501514
TU2041295 other downstream 1927135 17057122 ~ 17063385 (-) True LOC110501514
TU2039451 other downstream 3165306 15685856 ~ 15825214 (-) True b3galt1b
TU2044261 other upstream 154427 19175567 ~ 19177740 (-) False LOC110501547
TU2044262 other upstream 154427 19175567 ~ 19179184 (-) True LOC110501547
TU2044318 other upstream 300048 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 635142 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1324559 20345699 ~ 20346014 (-) True G1786832

Expression Profile