RNA id: XM_021579206.2


Basic Information

Item Value
RNA id XM_021579206.2
length 5027
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110501550
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19217104 ~ 19229868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCCGATTATCATCCGGTTTCTGGAAAAACTTACTGAGGAGTGATGAGGGCATTGCTTGCAGAGATGTGCCTGGAGATTGTGCGGTTTGTATCTGAGGCCATCCTGGAGGTCATCATCCCTGCAATTTTCCGTTTTGTACGGATATACAGCCATGTGTCTCCAGTATCCGGCAAGTCTCTAACAGAATCAGAGAGATCTTCTAGCACAAACCTGAAGGTTCGAACGAGAGGCAGCAGCAAATCCTCAAGGTCTTGCACGGCCAAATCAAGCTCCTCTCGTAATGGGTCTCAGACAGTGTTGCCAAATactcagggagatggtgagtctatATCATCTGAGCCACTCAGTGACTTTTTTGGGATCACTGAGGACAGTCTCCTCACTAGTGTCCAGGATTCCTTCAAAGAGTCGCTGAACAATGTCCTCTGTATCCAAAGAGAGGGCCAGGTAGACACTCAAAGTCTATCCCGGGTTATTGTTGGAGAAGTGTCAAAGAAGGTCAATTCCATAATCTCTGTGGCCATCCAAACTCCCATCTCTGGGCGAATATCCCCTGTCATTTTTGCCAGTGGTGGTGTCTCCAGCACCAAGGTGGTTGAGGAGATGGTGTCTGGCGTTTCCAACATACTTCAGATGTACATTAATGGGAAGAGTGTTGAGCATAGTGTTGTTCTCAGAGAGGATGGTGTTGAGGTGGATATGACACATTTAACAGGACAGGTCATGACAGCCCTCAGTGGCACTGTTTTGAACTTCAGCAATAAGGAGGAAAATGATCCCGACAGGAGGGAACTGCTTTGTGTTGTTGCTGACCATATGAAGATGCTTGAATCTTGTAAAAGTTCTGAGGAGATGCTAAAACAAGGAGAGAGCAACCTCAATATCAAAGGTGCCAAATCTAGTCTTCGTCTGTCAACACAAAGTATGGACAGACTACTCACTGAGGAGTTTCAGACCAAGGCCACTGAATCGATCCGGGAGATTGTTAAAAGATTCTGGGGTTGTAGATCATGTTGTTCTGGCACTACATCATCTAGTCCAACTCCTAGGATAGGTGAGATTGGAGACCTTATGATCGACCCTGAGGCCTCTGAGTTGGTAAGTACCTTTGTTTCAGACATGGACAATCTTACCCAGTCTATCAGGTCATCCTGCTCTCCTGCACAGAGTGAGCAGATCCTTCTTGAAAACCATCAGAGTAAGATCTGGTCTTACACTGTTGGTTGTTACTACAACATGAAAAATACGCTGAAGAGGCTTCTTACCTGTCCAGAAAAAGGGGATCTCTCAAGTACATTTGTGGAGAGCACAAGAGATTCTTTCACAATGGTTCCAACTTTGTGCCTGGACGTCGGTCATTCCAGTAATGGTGAAGCTGACACATCGGACTCCTTTTCTTGTAAACCACTTTTAATAACCCCCTCATCCATGAATGAACAAAAAGGACAAAGTGAGACCCAAAAACCTCTCTTGGCTCTCAAAAAGTATTTGCAAGACCAAGTCCTCCTTGACACCACAAAAGCGATTGCCAGCCAGGTTCTAGTCTTGTATAAGACTGAGGTGATGGAGAAGTTCTCATCTTCTGTTGGAGAGTGTGATTCTGAAGAGTCTCTAGAGGCCAATCTATTTGTGGATGGCATCATGTCTGACTTGAATGATTTCACCAGTTCTTGTTCCGCCTCACCATCTGAGTTGTTAGACAGTGAACAATGTCTCTCCGATCTCACTTTTCCACTTGGTCTGCAGGACAGCACCACCAACAGTGAATCTACCCAGAGTCTTCCAGTTATAAATATGACGAAACTCTCCAGTTTGTCTTTCCAGACAAAGGCTAGAAAGGCAGTGAGTGAAGCTCTGAGATCTGTCAACCCCTTTACAACCAGCTTACTGGGAGACTCTGAAGCATCTAAATTACTGGACACCTTTGTAACAGATGTGGAGACTATTGTTCAGTCCATGCAGGCACATGAATCTGAAATTCTAAGAATTTCAAAAGTGAGCACCCTTTCTGCTGCTCGTATTATATATCATAGATTTCGAGAAATGCTGAGGCGGTTTTTCACTCCCTGCCAAGACTCTGTGAAGGTCATCGAGGGTGTTACACCAATACATGACGAGACTCTCAAACAGGCTCCCAGTGAAAGTTTAGATTCTCAGGTGACTTGTAATAGTGATTCTCTTGAAATCCAAGCGGACCTTCAAACCTGTACCAAGGAGGTCATTAGTCAGATCCTCACTGTGTATCACTCTGAGGAATCCATGGAGGAATGCCTCTCTAGCCTAAAAGGAGATACAGAAGACCTGTCCAAGCTTTTGGATGCCGTTGTTTCTCAGATTGACGTCCTTGCCGCCTCCAAATCATATTTATCTGTTGATGACTATGTTGTCAATACACAGGACAATATGCATGGTGAGATCAACAATGATGAAGAGGAAGCATCCGCTAGAAGTCTTAAACCCACAGCCTTTGACAAACTATGTACTGAGGAGTTTCAAACTAAAGCCTCACATATGGCTGGTGGGATCCTTCGATCAGGGTTGATTGGCATTGTAAATACCAGCCTTGATGGTAGAAGTGCAGACATTTGTGCAGAGTCcagtaatgatggtgatgatagagaTGTCAAAATCCTTCAGAAGAGTGGAACTCCATCTTTATTCACCTCTTCTCTGCACACCAATTCTGCAGCATCCAACATCGTCATAAGCATCACAAAAGACCTTAATAGCTTCACCCAGATGACTAAAATGTCTGATGCTTCAGTGTCTGGCCAGTTAGAGAGATCCCTGTCAGCTTCAACCCTTCCTGTCAGTGTTCACAACGGGGCCAATGTGAAAGGAAATATAATTTGGCCAGGCACTGTTAACCTGTTCAACAATGTGTTCACCAAGGTCAAGGACTTTTTTGCCCAGCAACAACTGGTCCTCCTAGACAATGTGGTTGAGGCCCCCAAACATGCCGAATCCATATGCAGAACAGCTACTTCTACACAAATGACTGACAGTGAACATGAGggcagccagaccagcatggtaaATTATTCCAAAGCCTTAATTAGTCAGACTCTGATGACAATCCAGAGGAGAGTGTCTATGTCAGAGAGGATGAGCACCTCAGAGAAGGGCCTCTTGACTCGTTCCATCGTGGGCTCCATGTTGGAGGATGTTGACATGGTGAGAACTGATGGACACGAGATACACCGGCCATCCTCCTCAAAGTCCTCCCTGTCCATCACCTCTGCCATGACCAGAGGGTCCCAGAGTGATTTTACAAATTCTCTTCCAGGCACTCCAGTCCCCAATGAGTGGCCTGTTGAAAGCTATTGTCCTATCATTAGGAGTTCGGTCATTGATATGAGTGACTCCTCAACTCATTCACAAGGGTCAACAAATTACACAAGGCAAACCATCTCTGCCATAGTTGACACTGTTATGGAGGTAATTCCAAGAGAAGATACGGAACACATAGCCACTGCAGATGATGTCACTTCTTTTACAAGAAGACTTGCGAGACTCAGCCCCAGGGACGGTCTTCAGAACTTCTCACATGAGCTCACTGACAAAGTTTATGAGCTCATAAAAAGTCACAACACCCCCCAGGCTCTTTTTGTGCCAGCTGGCAAGAGCGTGTCTGACTCTATTCTTTTGAAGCTGAAGACAGGATTGAATGCTTCTGAAGAATCCAGGGAGTTTCCATCTGACCTTGTGTACTCCTTTGCTAAGGAGTCAATAAAACGTCTGCTACAGCAGATTATCTTCTGGCTTCCTCCACCATCACAAGGATCCGGTTTCTGCCAAACTATCATCTCTGATTTTTCTCTGCAGGACACAAGTCAGCTTATCCCGAGCTCTTCTGCCATCTCCATTAGTTCCTCACAGGTTTACTGTGACACAAAGAGCCTTTTCACCAATATAATGGTCAATCAGGTCATGGATACCTGTTCTGTGGCCTCAAATTCATCAGTAAAATTATCAGAGTTGATGAACATAATCAATGGGTTGTCCCCAACTGATGCTGGAACACTTGACTCTGACAGACTGGCTCTCATGACCACTAGCCGTCAGTCTAGTGCCAAATCATTGCCTACACCCTCTCTGTCTGGCAGCAGCACACACAACGGTGGAACTGTGGATATTCAAGTTTTAGGAGAGGTGGAATCCAAGATGGACAACAAAGATCTGGAGATGTCTAGTGTCTCTGTGCATCCATCAACTCCATCAGCCATGGACTCTGATACACATGCATCATTTGACTCCACTAGCAATGACTACACCTCTTTGGTACTTTTACTGATTATTAGATTGCTGTCAATGATCACCCCTATCACATTACTGGAATCCTCTGACATTGGTGAAACATCAAGAGTTCTCACAAAGAGGATTCTGTCTGAGTTCTGTGGCACCTCAGGCCTTGAACCAACTCAAGCCTACCCCCAGAATCTGAAAATCAAAAAGATTTTCAAGGCTGTCTACAAGGGGCTTCTTCAAGAATTTGGGTCAGAGAAGATGCTCCAGGTTGCAATGAAGTCAACGGATTATGCATTTGACGATGCCCTGGTCAAATCATTAACTAGGGAACTGCTAACTAAATGCAATGAGGCTAGCTCTTCACCTCCCTCCATGACTCAGTTGTCATCACACAATGCACTTGGCAGTGACGAGGTAGGTAATTCTGGGCTTCCAACAACTGGTAGAAaggaaaagaagagaggaagattcaACGCTCTCTGTGGATTCAACCCAAAGTGTACTCAGAAGGTCAACAAGAGGAACCACTGCACTCCAACACCTTCCCAGAACCAGACCCCTGCTATCAGTGAAACAGCAATTGTCAATGATCAAGAATCCTGCCGAACAGAGAGTGTATGCTCCATCAAGAAGAAACCAAGGAAGCGTTCGCTCATTTCCAGGATGTTTTCAGCTATAGGCAAAGCCTTGTCCAGTCCCTTTACTTCCTGCTATAAAAGGAAGAGCACCTAATCTATatttcaaaataaatattttaaataaACATATTTGCAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044206 lncRNA downstream 155680 19061212 ~ 19061424 (-) True G1785660
TU2044203 lncRNA downstream 162382 19054501 ~ 19054722 (-) True G1785657
TU2043774 lncRNA downstream 228974 18987916 ~ 18988130 (-) True G1785256
TU2043767 lncRNA downstream 233871 18982963 ~ 18983233 (-) True G1785249
TU2043750 lncRNA downstream 241607 18975155 ~ 18975497 (-) True G1785233
TU2044301 lncRNA upstream 42808 19266948 ~ 19267696 (-) True G1785740
TU2044304 lncRNA upstream 56345 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA upstream 56345 19280485 ~ 19280892 (-) True G1785743
TU2044303 lncRNA upstream 56867 19281007 ~ 19282658 (-) True G1785742
TU2044309 lncRNA upstream 58991 19283131 ~ 19283978 (-) True G1785744
XM_021579201.2 mRNA downstream 37838 19176266 ~ 19179266 (-) False LOC110501547
XM_021579199.2 mRNA downstream 37839 19176266 ~ 19179265 (-) False LOC110501547
XM_021579200.2 mRNA downstream 38265 19176266 ~ 19178839 (-) False LOC110501547
XM_021579198.2 mRNA downstream 38271 19176266 ~ 19178833 (-) False LOC110501547
XM_021579192.2 mRNA downstream 180595 19034465 ~ 19036509 (-) True LOC110501543
XM_021579209.2 mRNA upstream 36321 19260461 ~ 19279512 (-) True slc40a1
XM_021579217.2 mRNA upstream 87149 19311289 ~ 19313728 (-) False zgc:136439
XM_021579216.2 mRNA upstream 87282 19311422 ~ 19313726 (-) True zgc:136439
XR_005038798.1 mRNA upstream 98865 19323005 ~ 19330646 (-) False osgepl1
XM_021579215.2 mRNA upstream 100518 19324658 ~ 19330646 (-) True osgepl1
TU2044262 other downstream 37920 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 39364 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1313153 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1313153 17870128 ~ 17903951 (-) True G1783895
TU2041294 other downstream 2153656 17057122 ~ 17063448 (-) False LOC110501514
TU2044318 other upstream 97048 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 432142 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1121559 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1166376 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2566616 21790756 ~ 21820945 (-) True LOC110501594

Expression Profile