RNA id: XM_021579209.2


Basic Information

Item Value
RNA id XM_021579209.2
length 6376
RNA type mRNA
GC content 0.44
exon number 8
gene id slc40a1
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19260461 ~ 19279512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGACGGCGGGGACAAAAacactgttggtagtgcagaaaGGACGAGAAGGCTGCTGGAGCCGTCCAGGAGATTTTATTGTTTTACATTTGAACTAACAAGGCTTTTCGGAAAACATATATCTTTCCAACTTCAGCTACAGTGATAGCTAAGTTTGGAAAGGAGAAAGGGGAGCTTTGGAGTGCGTTTATCGAAAATTCAATGAACCGAGTATCGCCTGCATCGAAAGCCTGTACAAAGGGAAATAAATATTGACTAAATTATTTTGAGAAAAAAATTGCAATGGATAACGCGGGACCTAAGAAACGTTATTGTGAATCTGTCCAATCCTTCTTCACATCGGCAAAGTTCCTTATTTACCTTGGACATGCCCTCTCCACATGGGGAGATCGTATGTGGAATTTCGCTGTAGCTGTATTTCTGGTGGGGCTGTATGGCAATAGCCTCCTGCTCACGGCTGTGTACGGACTGGTGGTGGCAGGGTCAGTCCTGCTGCTCGGAGCCATAATCGGTGACTGGGTGGATAAAAACCCCAGACTCAAAGTGGCCCAGACTTCACTGGTTGTCCAGAACTGTGCCGTCATACTGTGTGGGATCCTCTTGATGGTGGTTTTCCAGTTCAAAGAACAGCTCTCTGAGTTATATAATGGATGGGTTCTGACATGCTGCTATATCTTGGTCATCTCCATAGCCAACATTGCTAACTTGGCCAGTACTGCCATGTCCATTACCATCCAGAGAGACTGGGTGGTGGTTGTGGCTGGACAGGACAGCAGCAAGCTGGCAGACATGAATGCCACAGTACGGATCATCGACCAGCTAACAAACATCCTGGCGCCTATGTTGGTGGGCCAGATCATGGCTTTCTGCTCCAACTTTATTGGCTGCGGCTTCATCGCCGGCTGGAACCTGTGCTCTATGTGCTTGGAGTACTGTCTGCTGTGGAAAGTCTACCAGAAAACTCCAGCACTGGCCATGAAGGCTGTCAAGAAAGAAGACTACCAGGAACTGAAACGACTGAACTCCCCAAAAGAGCTAGAGAACGGACAGGGCCCAGTGGAGGGCTCCCAGCTCATGAACGAGACTGCTGTCGTCAAGGCCGACTCTCCCAGGAAGACGGGCTGCTGCTACCAGATGGCGGAGCCCCTGCGCACCATCCGCGATGGCTGGGTGGCCTACTACAACCAGTCCATCTTCTTCGCTGGCATGTCCCTGGCTTTCCTCTACATGACAGTGCTGGGCTTTGACTGCATTACCACAGGCTATGCCTACATGCAGGGCCTCAACGGCTCTGTGCTCAGCCTGCTGATGGGCGCCTCAGCCGTGTCGGGCATCTGTGGCACGGTGGCCTTTACCTGGGTTCGCAAAAGCTGTGGCCTGATCCGCACAGGCTTCATCTCGGGTGTGGTGCAGCTCTCCTGCCTAATGCTGTGCGTGGCGTCCGTCTTCGCACCGGGCAGCCCCTTTGACCTCAGTGTCTCGCCTTTCCAGGACATCTATAGCCACCTGACTGGGAAGAGCAGCGCCCTCCCGGAGGCCGCCTACCCGACTAGCGTGCTAACCATCGATGGTCAGGGTCTGCTGGTTAATAGTTCGACCGTGCCGCCCGCCGAGGAACTGCCGCCTCTGCAGTCCTACATGTCAGTCAGCCTGCTGTTTTCTGGGGTCATTGCTGCTAGAATTGGTCTATGGTCCTTTGACTTAACCGTGACCCAGCTCATCCAAGAGAATGTGATCGAGTCGGAGAGGGGACTGATCAACGGCGTCCAGAACTCCATGAACTACCTCCTAGACCTTCTGCATTTCATCATGGTGATTCTGGCGCCCAACCCAGAGGCCTTCGGCCTGCTCGTCATCCTCTCCGTCTCATTCGTGGCTATGGGCCACATAATGTACTTCAGGTTTGCCTTTAAGAGCCTCGGGCGGCGCCTCTTCCTCTGCTGGTCTCCAGAGCAGCAGACTCAGGCCCTCCCCGACTCTCCCTCCTTGCTTCCCACCACGGTGTAACCCATTAAAGAGACTCTTTCCCTGCTTACAGCTCCGCCTGCAGTACACAAATACCCCCTTCTCCTCCAGCCCCCTAGTCATCAACCTAAACATGCTTGTAGCCCCGGCAGGACTAATGTATTTACTTTTGCGCCTTACCCTAGCAGGTGCTGTCCTTTGTCATTGTAGATAGCATTTACCGTTCGCTGAGGGAGGGTAGTGCGGCCGCAGACACAGAGAAGGAGTCTCTCTCAGACAAACAACCCAGATCATGAGGTCATAAGTGTCACAAAAAGACCACTTCCCTACTTCCAATATTTAAAATGTAGCAGTCTTGTCATGCATTCAGCTTAGAAGCTAAATTCAAATGTGGAAAATTGCAGGTATTGCCACTTGCAGTTACTAGGGTTACAGCTGGGTACTGCTCAAGTATGTGCTAATGCTGTTTGCATCTCATTACAGCTCTGCATCAGCCGTGGGATTCCCATTTCCACTTTGAAGCCATTTGTTTCTAAGTAGTTTATTTGTGCTATAAATAATTTGTGTTAGCATTTGTTATTTCAGCTTTAGTAATTAATGCTTTAGATGATCAGTTCTTGCTCATTTCTCTTTAATACGCGGTTATAAGGGttatgcaaatgtatttattcaaGGAGCGCAAATACTTATGTTTATCTATACAtggagtgtacaaaatattaggaacacctgctctttctatgacggactgaccaggtgaacgtTACGATCCTTATTGGTGATACCTAAATCCACTTcaaagacaggttaaagaaggattttaagccaTGAgatagagacatggattgtgtgtgtgccatggagggtgaataggcaagacaaaatatttaagttcctttgaacggggtattgtagtagatgccaggtgcaccggcttgagtgtgtcaagaactgccacgctgctgggtttttcacgctcaacaatttcccgtgtgtatcaagaatagtccaccacccaaaggacagccagccaacttgacaactgtgggatgcactggagtcaacatgggccagcatccctgtggaacgcttgacacattgtagagtccatacACCAActgattgaggctgttctgagggcaaaagggggtgcaactcaatattaggcaggtattcctaatgttgTGTACACTCAGGTGTATATTCTCAATGTGTCACTATTGTCTTTCTCACCAAATGTTGGTGCTAATGTACTAGCTATAGCAAACAGCTGGGAAACTGTGCATTCACATTAACAATGCACTCAATGACCAAAGTGGACCTTCTTATATAGCTTAAAGGAAGTGAGGGGAAAACAGGATTGTTACATTTTGTTTGAGCATTCCAAATCATTTTTGATGTGAAGTGACAGTGAAACTTGTATAAGCTCATTAACGCTATTGTAGACACTTGTGTACACTTAAGATCTCGACCCCCTCCCCGCAATTCTCTTAACTATAGTATAACAATGTAAACTACTAGTTATTTGTCATAATTGATTTCTACACAGGTATTCACACaccttgtctttttccacattgtgtgttATAGCCTGATTTCAAATTGAGATTGTGTTTCTagcctacacacattaccccatattGTCAGTGGAATTGTTTCATATTTtcaaattaaaaatgaaaagctgaaatgtagagtcaataagaattcaacccctttgttatggcaagcctaaataagttcaggagtaaaaatatgcttaacaagtcgcatggactcactgtgtacaatgagtttaacatgattttttaaatgactaactcacctctgtaccccacacatccaAATAATTTTAAGGTCCCTCAGCCGAGCATTGAAtatcaaacagattcaaccacaaagaccagcaaggttttccaatgcctcacaaagggcggcaactattggtagatgagcaaaaatgtttttaaaaaaagcagatgttgaatatccctttgagcatggtgaagttattaattacacttttgatggtgtatcaatacacgcagtcactacaaagatacaggcatccttcctaactcagttgccggagtggAAGGAAACCGCTCTGGGTTTTcagcatgaggccaatggtgactttaaaaccacTAGTTTAAAGGCTGTGAAAggataaaactgaggatggatcaacagcaaTACGAACaaaattgacaaagtgaaaaggaagcctgtactgaATAAAACATAGTTGTGTTGTTTGTGGTAAATCCAGTACCAAtccccatattttcaagcatagtagtggctgcatcatgttatgggtatgcttgtaatagttAAGGACTGGATAGTACAACAACAAAAGAAACAGAATGAAGCCAAACAGGCAAAATTAGTGGAAAACCTGGTTTGTCCGCTTTCCAACatacactgggagattaattcacctttcagcaggacaataaccgaaaacaaggccaaatctacaatggaattgcttaccaagaagaggGTGAATGTGAACGAGTTACAGTTGACATATCTAATTGAAAATCaaatggcaagacctgaaaatggttgtcttgcaatgatcaacaaccaatttgacaaagcttgaagacttttgaaaataataaaaatgggcaaatgttgcacaatccagacgTGGAAAGCTTACTTACCCAGAAAAGCTCaccgctgtaatcgctgccaaaaggtacaggggtatgaatacttacagAAACTAGatgaataaaaaaatgttttcattttgtcattgtgggatattgtgtaGATGGCGAAGAGAAAAAaagtaatacattttgaattcaggctgtaacaatgtggaataagtcaaggagtatgaatactttaaGTGATTGTACTATGTCCATAATAATGGCTGAGCTCCTGCCTCCCCACTTTGAGGTTAACTGAAGGACTTTTAGTTTCCTGGCGGGCCCATGATACCGAGCCATCATTACGCTAAGCTCTgccacaaatgcacacacacagcgcAATCGTAAACCCAGACACAAGGTGAGCATGAAAAACTGATTGCATCTTCAGGTTGTCTCAGCTGGCCAGGGACTGCCATTACACCAACCAGGTGGTTGCCAGGCAGAACTGTACGTTCGTAGCTCTTGGAGCTCTCCAACACCACTAAAATGTTTGCAGAAgccttatttattttttaaatgtggtTTGACTCACTAATACTCACATGTTCACAATAGACTACGGTTATTACCGCTGCCCATGAAAACCATGGCTGAGATTTTGTAATGAAAATATTAGGATTGGTGCAGAGAATAGCCACAGCACTTTAAGAGAACAGTGAGGCCTTTCTTTACATCTGCCTACAAGAGTCTTTTAATACACCGCCCAGAGCTAGAGTCAGACAGGACTGCAGGTTTGTGGAACTGCAGCTGGTGTTCTGTGGAGAAATGGCAGGAACTGAGCTCTGTGTTGATGTTTGACATGGGTTACCCCTCAAATGTAAAGTAAGCACATTCTCCAGAAAATAACAGCGCATTTGTTCTTAACATTTATTCAGGAATACTTCATACAAGGCAATTTTATATTTGTCATAACAATTGCCGTCAATTTATAGACTATTTGATACACTGTACTGGATGTACATTTTTTGTAGTTGAACATTGTCAGATTGTCGTCTTTAAATGTTGGtcttgtttttaaatgtttttatataaGTGTTAACTTCTCAATTAGCAAATAAATGTTTTCTGAACGATTTGTGAAATTTCTCTGCCTCGTGTTTACAAAGCAATGCTCTCATGCATAATAGTAATGGGATTTTGTTGTTGATTGTTACAGATcaatatttgttatttttttgccaCTGTATGTAGTGTACACTAGCGCTGGTCCGCTGTACCTGCATCAAAACCCCGGTATTTTTCATCCCATAGCATCTTTTTAAAACAGCGAGCCAACATATTTTCAGGACTTATTTCCCTGACAGATCAAAACTAGTTGTTTTCTCATGCtctcgtctctctgcagcagacatagtgAGCtaaatgtttggaacatcaaatcgcaatacatatagaatcatgagaaccgcaatacatatcgtatcggcacatCGTAAGGTCCctagcaattcccagccctaatgcATAAACCAAGAAAATCATGAGTACACTGTTCCAATGGACCATAATGTACTGTCCATAATCTCCCATCATTGTTAAATACAGAAAAAGTATTGTTAGAAAATCTGTTTAAAACAAAATATTGAATCATTGTGAAATCATTAATCACAGCTTGCAACAGAGTAAATTGAGATGTTTGAATGCAAGAATTACATTCACTTCAATGGAGTATAGGACAGTTATACAGCTTGTATTGCATGAGctctgaaataaataaaaagtatttaCAC

Function

GO:

id name namespace
GO:0034755 iron ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005381 iron ion transmembrane transporter activity molecular_function

KEGG:

id description
K14685 SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044206 lncRNA downstream 199037 19061212 ~ 19061424 (-) True G1785660
TU2044203 lncRNA downstream 205739 19054501 ~ 19054722 (-) True G1785657
TU2043774 lncRNA downstream 272331 18987916 ~ 18988130 (-) True G1785256
TU2043767 lncRNA downstream 277228 18982963 ~ 18983233 (-) True G1785249
TU2043750 lncRNA downstream 284964 18975155 ~ 18975497 (-) True G1785233
TU2044304 lncRNA upstream 973 19280485 ~ 19280928 (-) False G1785743
TU2044305 lncRNA upstream 973 19280485 ~ 19280892 (-) True G1785743
TU2044303 lncRNA upstream 1495 19281007 ~ 19282658 (-) True G1785742
TU2044309 lncRNA upstream 3619 19283131 ~ 19283978 (-) True G1785744
TU2044310 lncRNA upstream 4519 19284031 ~ 19284379 (-) True G1785745
XM_021579205.2 mRNA downstream 30593 19217104 ~ 19229868 (-) True LOC110501550
XM_021579206.2 mRNA downstream 36321 19217104 ~ 19224140 (-) False LOC110501550
XM_021579201.2 mRNA downstream 81195 19176266 ~ 19179266 (-) False LOC110501547
XM_021579199.2 mRNA downstream 81196 19176266 ~ 19179265 (-) False LOC110501547
XM_021579200.2 mRNA downstream 81622 19176266 ~ 19178839 (-) False LOC110501547
XM_021579217.2 mRNA upstream 31777 19311289 ~ 19313728 (-) False zgc:136439
XM_021579216.2 mRNA upstream 31910 19311422 ~ 19313726 (-) True zgc:136439
XR_005038798.1 mRNA upstream 43493 19323005 ~ 19330646 (-) False osgepl1
XM_021579215.2 mRNA upstream 45146 19324658 ~ 19330646 (-) True osgepl1
XM_021579219.2 mRNA upstream 59240 19338752 ~ 19345836 (-) False ormdl1
TU2044262 other downstream 81277 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 82721 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1356510 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1356510 17870128 ~ 17903951 (-) True G1783895
TU2041295 other downstream 2197076 17057122 ~ 17063385 (-) True LOC110501514
TU2044318 other upstream 41676 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 376770 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1066187 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1111004 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2511244 21790756 ~ 21820945 (-) True LOC110501594

Expression Profile