Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004883 |
| length | 1180 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 5 |
| gene id | XLOC_002625 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 10712178 ~ 10714227 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001707 | mesoderm formation | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0048332 | mesoderm morphogenesis | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0042659 | regulation of cell fate specification | biological_process |
| GO:0072045 | convergent extension involved in nephron morphogenesis | biological_process |
| GO:0043034 | costamere | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00004881 | lncRNA | downstream | 133346 | 10564261 ~ 10578832 (-) | False | XLOC_002624 |
| TCONS_00006008 | lncRNA | downstream | 381047 | 10327167 ~ 10331131 (-) | False | XLOC_002623 |
| TCONS_00006007 | lncRNA | downstream | 381558 | 10324509 ~ 10330620 (-) | False | XLOC_002623 |
| TCONS_00006006 | lncRNA | downstream | 423495 | 10287455 ~ 10288683 (-) | True | XLOC_002621 |
| TCONS_00006004 | lncRNA | downstream | 423512 | 10261345 ~ 10288666 (-) | False | XLOC_002621 |
| TCONS_00006010 | lncRNA | upstream | 70113 | 10784334 ~ 10787649 (-) | True | XLOC_002626 |
| TCONS_00004895 | lncRNA | upstream | 617748 | 11331969 ~ 11333113 (-) | False | XLOC_002632 |
| TCONS_00006011 | lncRNA | upstream | 1181152 | 11895373 ~ 11898575 (-) | True | XLOC_002638 |
| TCONS_00006012 | lncRNA | upstream | 2584618 | 13298839 ~ 13301973 (-) | True | XLOC_002642 |
| TCONS_00006013 | lncRNA | upstream | 4316785 | 15031006 ~ 15042748 (-) | True | XLOC_002656 |
| TCONS_00004882 | mRNA | downstream | 105060 | 10564447 ~ 10607118 (-) | True | XLOC_002624 |
| TCONS_00004875 | mRNA | downstream | 693384 | 9835679 ~ 10018794 (-) | False | XLOC_002620 |
| TCONS_00004877 | mRNA | downstream | 694058 | 9884403 ~ 10018120 (-) | False | XLOC_002620 |
| TCONS_00004876 | mRNA | downstream | 695830 | 9837292 ~ 10016348 (-) | False | XLOC_002620 |
| TCONS_00004874 | mRNA | downstream | 750690 | 9834896 ~ 9961488 (-) | False | XLOC_002620 |
| TCONS_00004884 | mRNA | upstream | 146538 | 10860759 ~ 10863936 (-) | False | XLOC_002627 |
| TCONS_00004885 | mRNA | upstream | 146538 | 10860759 ~ 10864331 (-) | True | XLOC_002627 |
| TCONS_00004886 | mRNA | upstream | 165316 | 10879537 ~ 10969444 (-) | False | XLOC_002628 |
| TCONS_00004887 | mRNA | upstream | 166444 | 10880665 ~ 10969596 (-) | True | XLOC_002628 |
| TCONS_00004888 | mRNA | upstream | 286673 | 11000894 ~ 11012000 (-) | True | XLOC_002629 |
| TCONS_00004879 | other | downstream | 379751 | 10319308 ~ 10332427 (-) | False | XLOC_002623 |
| TCONS_00004880 | other | downstream | 382624 | 10329464 ~ 10329554 (-) | True | XLOC_002623 |
| TCONS_00004869 | other | downstream | 1173852 | 9534782 ~ 9538326 (-) | False | XLOC_002618 |
| TCONS_00004859 | other | downstream | 1570499 | 9141565 ~ 9141679 (-) | True | XLOC_002611 |
| TCONS_00004856 | other | downstream | 1622542 | 9037358 ~ 9089636 (-) | False | XLOC_002608 |
| TCONS_00004903 | other | upstream | 1047159 | 11761380 ~ 11764439 (-) | True | XLOC_002636 |
| TCONS_00004913 | other | upstream | 2590844 | 13305065 ~ 13305183 (-) | True | XLOC_002643 |
| TCONS_00004918 | other | upstream | 2892806 | 13607027 ~ 13607143 (-) | True | XLOC_002646 |
| TCONS_00004919 | other | upstream | 2897912 | 13612133 ~ 13612248 (-) | True | XLOC_002647 |
| TCONS_00004920 | other | upstream | 3217348 | 13931569 ~ 13931696 (-) | True | XLOC_002648 |
