RNA id: XM_021579216.2


Basic Information

Item Value
RNA id XM_021579216.2
length 1163
RNA type mRNA
GC content 0.42
exon number 9
gene id zgc:136439
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19311289 ~ 19313728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCTGTTCAATTACTTTTGAAGGCGTTGCTTTGTTGAGACtttgtactgtaacctacagcGCACTGTCGGTTTTCCCCCCAAAATAGATTTTTTACGTCGTGGAAGAATGAGATTCTGATTGACACAGGTAACTGTTTACAGCAACATTTGAACTAGCGTCTTATTTAGCCACATAGCTAAATAAGTGACTGACGCTAAGCAGCCCACTCTGGCACGGTTGTTTAAATGAAAGCGGTTATTCTCGCTGCGGGATATGGAACAAGGTTGCAGAGAGATGTTGATAACGACACAAGCGGAAGATTCAAACATCTGGCTGGCATTGCCAAGCCACTGCTTCCTGTGGGGCACTGTGCCTTGATATCTCACTGGGTCCAAGCTTTGAATACCACTGGATGCGTGGACACCGTCTTTGTCATTACCAATGCCCTTCACCACAAAGCATTTGAGGAGTGGGCCCTGGACTTCCCTAATGTCAAAGTCCTAAGTGATGGAACAAAGAGCAATGAGGACCGTCTTGGTGCCGTCGCCTGTCTTCAGATAACAGTCAAGCACTTCAAGATCGAAGACCATGTAATAGTTATCGGAGGAGACACTTTGTTCAAGGAAGAGTTCAGTCTCATTAAAGTTAAAGATAAGTTTTCTGACCTGCAAGCAATGTGTGAAGACAGCAGTCTGGTTCTTTCCTACCAATGTAAAGATGAGGAGACACAGAAGTATGGTATTTTGGAAGTCGATGAACACCTTCGGGTGCTCTGTATGAAGGAGAAACCTCTTCCCTCGGAGACAAAATCAAGGAGAGCAtgtcCATGTTTCTACTTGTTTTCCAAGAAAATCCTTCATCTATTGGATGCCTTTCTTGATGAAAATAAGGAAGCACCAATCGAAGAAAAGGACGCGCCTGGAAACTTTTTGTCATGGCTCATTTCAAGAAAGCCTGTGTATATTCATCAGATTTCTGGCCGTTTTGATGTGGGAAACCTGCCCTCCTATGTTGAATGTGACCGGTACTTCAGAGAAAATCTTCAAGATGTGAAGTCTTATATGACGTAGTGTGCACAGAGCCATGTTTGAGATTGGCAATGTGAAGAAAATTGTAACTTTATTTGTGCCTTAAATATTAAACATATTTTGAAAATATTCAAATTATATTACAATCAAAA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044313 lncRNA downstream 19834 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 27043 19284031 ~ 19284379 (-) True G1785745
TU2044309 lncRNA downstream 27444 19283131 ~ 19283978 (-) True G1785744
TU2044303 lncRNA downstream 28764 19281007 ~ 19282658 (-) True G1785742
TU2044305 lncRNA downstream 30530 19280485 ~ 19280892 (-) True G1785743
TU2044317 lncRNA upstream 5766 19319492 ~ 19319839 (-) True G1785752
TU2044427 lncRNA upstream 172402 19486128 ~ 19486335 (-) True G1785857
TU2044431 lncRNA upstream 176793 19490519 ~ 19490733 (-) True G1785861
TU2044997 lncRNA upstream 372764 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 374039 19687765 ~ 19688406 (-) True G1786380
XM_021579209.2 mRNA downstream 31910 19260461 ~ 19279512 (-) True slc40a1
XM_021579205.2 mRNA downstream 81554 19217104 ~ 19229868 (-) True LOC110501550
XM_021579206.2 mRNA downstream 87282 19217104 ~ 19224140 (-) False LOC110501550
XM_021579201.2 mRNA downstream 132156 19176266 ~ 19179266 (-) False LOC110501547
XM_021579199.2 mRNA downstream 132157 19176266 ~ 19179265 (-) False LOC110501547
XR_005038798.1 mRNA upstream 9279 19323005 ~ 19330646 (-) False osgepl1
XM_021579215.2 mRNA upstream 10932 19324658 ~ 19330646 (-) True osgepl1
XM_021579219.2 mRNA upstream 25026 19338752 ~ 19345836 (-) False ormdl1
XM_021579218.2 mRNA upstream 25026 19338752 ~ 19345840 (-) True ormdl1
NM_001124282.1 mRNA upstream 125470 19439196 ~ 19442706 (-) True mstnb
TU2044262 other downstream 132238 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 133682 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1407471 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1407471 17870128 ~ 17903951 (-) True G1783895
TU2041295 other downstream 2248037 17057122 ~ 17063385 (-) True LOC110501514
TU2044318 other upstream 7462 19321188 ~ 19321859 (-) True G1785753
TU2044972 other upstream 342556 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1031973 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1076790 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2477030 21790756 ~ 21820945 (-) True LOC110501594

Expression Profile