RNA id: XR_005038798.1


Basic Information

Item Value
RNA id XR_005038798.1
length 1717
RNA type mRNA
GC content 0.48
exon number 9
gene id osgepl1
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19323005 ~ 19330646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTGTTTACATGTGACACAAGCTCCTCAGAAGTACAAGCGTGAGGTCGTGGAGCTCCGCACACAAAAATTCAACACCGCAATTTTAGCTTTTGCGACAAATGCAAACGTATTTAATTGTCACTGACAGTGGCATTGTCGTGAGACTTAAAATCAAGTTATTAATGAATGACATAACTTTAGAAAATACTAATAGACCATCGTAATGGTCCCTGGTAGCAGAGCTATTTTCCTCGCCTCTTGCGAATCTCTACGGATAGCGGTGCTTACCAAATTTCAGTAATTTAAGCATGTATTTTGGCTAGTGCGGGAAAATCGGTTTTAGTGAAATAAAATGTTTGCATATAAAGCTTCGGCTCAACAGGGCACACGTATGTTTAGAGCCAAGATTTTAAGCAAATGTGCTTTTAGAAGAAAAATGAGTTCCAGGCTTGTTCTCGGCATTGAGACGAGCTGTGACGAGACAGGTGCGGCTGTAATGGATGAAACAGGTTTAATCCTTGGAGAATCTCTTCATTCACAAAAAGAGGTGCACATGAAGACTGGTGGGATTATTCCCACTGTTGCCCAGCGGCTCCACAGAGAGAACATAGGCCGCGTCGTCCAGGAGGCCATGGAGAGAAGTGGCGTCACCCAGAGTCAACTGTCTGCTGTAGCCACCACAGTGAAGCCGGGCCTGGCCCTGAGTCTGGGGATAGGCCTGCACTTTAGCCTGAACTTTGTAAAGCTACACCAGAAGCCCTTCATCCCCATCCACCACATGGAGGCCCACGCCCTGACAGTCAGGATGCTCCAGCCTGTAGTATTCCCCTTCCTCGTCCTCCTAGTCTCCGGAGGTCACTCTCTCTTGGCTCTGGCCAGAGGAATTGATGACTTTCTTCTCCTGGGTCAAACACTGGATGAAGCTCCAGGGGACACTATGGACAAGGTGGCAAGACGTTTGTCACTCATCAAACACCCAAAGTGCTCCATGATAAGTGGGGGTCAAGCAATAGAGATTCTGGCTCGAGATGGAGACAGGTTGAAGTTTCTCTTCAAGCCACCAATGGGAGCGCACTATGACTGTAACTTCTCATTTGCTGGTCTGCGAAATCAGGTGACGATGTCAATACAGaaaaaagaggaagaggaagGTGTGGAGCAGGGAACTTTGTTGTCATGTGTTAATGACATAGCTGCTGCTACGCAGCACACAGTGGCCTCTCACATTGCCAAGCGCACACATCGTGCCATTTTGTTCTGTAAGGCCAAAGACCTTCTGCCTTCCTGCAATCCAACACTGGTGGTGTCAGGAGGAGTTGCCAGTAACCAGTACATCCGAAAGATTTTGAAGATTGTCACAGACACCACTGGATTACATTTGCTTTGTCCTCCATCCAAGTTTTGTACTGACAATGGAGTCATGATCGCATGGAATGGAGTTGAGAGACTGAGGGAAGGAAAGGGCATCCTGTCCCATACTGAGGAGGTCAACTATGAGCCCAAAGCTCCCCTGGGTGTGAACATAACAGCAGAAGTGAAGGAGGCAGCTATCAAACTTCCACCATTAAAGCTGAGGGTTACGGACTGACGTTCACTTATaatACAGGTGAGCACATAGGTGACCAACAGCTCCCATGGTGACAATAGCATCAGGAATACCTGCCCGGGTGTGAGCCAGACTGGCTAGCAACTGAGCTATGGCAGAAATGTATGCAGTAAGTACTGGGCTGAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044317 lncRNA downstream 3166 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 31417 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 38626 19284031 ~ 19284379 (-) True G1785745
TU2044309 lncRNA downstream 39027 19283131 ~ 19283978 (-) True G1785744
TU2044303 lncRNA downstream 40347 19281007 ~ 19282658 (-) True G1785742
TU2044427 lncRNA upstream 155482 19486128 ~ 19486335 (-) True G1785857
TU2044431 lncRNA upstream 159873 19490519 ~ 19490733 (-) True G1785861
TU2044997 lncRNA upstream 355844 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 357119 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 643674 19974320 ~ 19974561 (-) True G1786566
XM_021579217.2 mRNA downstream 9277 19311289 ~ 19313728 (-) False zgc:136439
XM_021579216.2 mRNA downstream 9279 19311422 ~ 19313726 (-) True zgc:136439
XM_021579209.2 mRNA downstream 43493 19260461 ~ 19279512 (-) True slc40a1
XM_021579205.2 mRNA downstream 93137 19217104 ~ 19229868 (-) True LOC110501550
XM_021579206.2 mRNA downstream 98865 19217104 ~ 19224140 (-) False LOC110501550
XM_021579219.2 mRNA upstream 8106 19338752 ~ 19345836 (-) False ormdl1
XM_021579218.2 mRNA upstream 8106 19338752 ~ 19345840 (-) True ormdl1
NM_001124282.1 mRNA upstream 108550 19439196 ~ 19442706 (-) True mstnb
XM_021579223.2 mRNA upstream 192415 19523061 ~ 19525499 (-) True LOC110501563
XM_036958935.1 mRNA upstream 199752 19530398 ~ 19544185 (-) True lss
TU2044318 other downstream 1146 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 143821 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 145265 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1419054 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1419054 17870128 ~ 17903951 (-) True G1783895
TU2044972 other upstream 325636 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 1015053 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1059870 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2460110 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 3087484 22418130 ~ 22419498 (-) True G1789581

Expression Profile