RNA id: XM_021579218.2


Basic Information

Item Value
RNA id XM_021579218.2
length 1628
RNA type mRNA
GC content 0.40
exon number 4
gene id ormdl1
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19338752 ~ 19345840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GcaatgttttgaaaggctggcttttattttttttttaggatTCCTAATTGCAACTCAAAAGTGACGTCATCGTTTGTGCCGCTAGTGAAGGGGAGCTTGGCCTTCTGTCGTTCTTACTGCCACGTTTAAAAACCGATTCATAACAAGGTACTCCAAAACAAAATGAATGTTGGCGTAGCGCACAGTGAGGTGAACCCCAACACTCGGGTCATGAACAGTCGAGGGATCTGGCTCACCTATGCCCTCGGTGTTGGAATGCTTCACATTGTGCTCTTGAGCATACCCTTCTTCAGTGTACCTGTGGTGTGGACTCTCACAAATGTTATACACAATTTTGGGATGTATGTCTTCATGCATGCAGTGAAAGGCACTCCGTTTGAGACCCCAGACCAAGGCAAAGCCCGGCTCCTGACACATTGGGAACAGTTGGACTATGGCGTGCAGTTCACATCATCCAGAAAATTCTTCACCATCTCCCCAATCATTTTATATTTTCTTGCAAGTTTCTACACGAAGTACGACACTACACACTTTGTCATAAACACTGCCTCCCTTTTGAGTGTGCTGATCCCCAAATTGCCACAACTACACGGAGTCCGCATCTTTGGCATCAACAAGTATTAAGCTGAGTGTTGAGAGTCAGTGGTGTGACAAACTCTCAAAGGAGCTATTGGCTCATAGCAAGATGAATAGTTAACCCTTTTTACTCTGTACCACTGGAGTTTGTACTGAGCAGTTTTGTACGGTATGTGTAATTGTCACTCATTGTTTAGATACGCCAGGTTAAACTATAGTGGGAGACTTGGAGAGCGACGATAATTCCATGTGCATTACTAACTTAAGTAaatatttaattattattatttttaatctaCATAGACCTGGGCTGGCCCATGTTTAAGAAGTGGAGCTTTttttgttctgtttttgtttgCCCTCACTTCACACAGTGACAAAGATTGCGTTCCTCCTTGTTACAATAAATGTTTCTCATCGTAACCGAAAGCCTTGGAAATATCAGATGCATTTTTAAAGATAATTTCTCCATAAAAGTAGGAGCCTATGGTTCAATGTTTGACACTTATTTTTAGATGGGTTATCATTGCTGAAAAGAACTGAACAATATGAAATACACATTTCTTATGATTTCCTTGGTATATGAATCATTTCTCATTGTTACTCAGTTATATAGGGCAGGCATTTTTTTTCAGTGTATATAGTTGTATGTATAGGTTAATGTCTTTCTTGATGATTTTTCATAAGATGTGTTGTCAGATGAAAGTGTTTACTGAGACGGGTCTACGGTTTGCCTATGTACCTATATTCATGTCGCTGTACTTGTTTAGGAGATCTCCTGGATGGTATTACCAAGGTCCTGTTCTGTTTGGTCATGGCTTATCCACGGTATTCTTGGAGCTTTGTCAGCCCCTGTATCTAACATCATTAAAACATTTGTGCCCTTAAAAGCAGTGTGTATGTCTTAACTGGCTAAATTTGAGGGAAATGGATGGAAACCCATATTTTGACATGCACTGACTACAGTGGGAGATGAGCATAAAAACAAGCTGTGACAAAAGCTTTGTTTAAAATGAAATGCAATAAAGTAAAACAATTTATGTAATCCAAAA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044317 lncRNA downstream 18913 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 47164 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 54373 19284031 ~ 19284379 (-) True G1785745
TU2044309 lncRNA downstream 54774 19283131 ~ 19283978 (-) True G1785744
TU2044303 lncRNA downstream 56094 19281007 ~ 19282658 (-) True G1785742
TU2044427 lncRNA upstream 140288 19486128 ~ 19486335 (-) True G1785857
TU2044431 lncRNA upstream 144679 19490519 ~ 19490733 (-) True G1785861
TU2044997 lncRNA upstream 340650 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 341925 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 628480 19974320 ~ 19974561 (-) True G1786566
XR_005038798.1 mRNA downstream 8106 19323005 ~ 19330646 (-) False osgepl1
XM_021579215.2 mRNA downstream 8106 19324658 ~ 19330646 (-) True osgepl1
XM_021579217.2 mRNA downstream 25024 19311289 ~ 19313728 (-) False zgc:136439
XM_021579216.2 mRNA downstream 25026 19311422 ~ 19313726 (-) True zgc:136439
XM_021579209.2 mRNA downstream 59240 19260461 ~ 19279512 (-) True slc40a1
NM_001124282.1 mRNA upstream 93356 19439196 ~ 19442706 (-) True mstnb
XM_021579223.2 mRNA upstream 177221 19523061 ~ 19525499 (-) True LOC110501563
XM_036958935.1 mRNA upstream 184558 19530398 ~ 19544185 (-) True lss
XM_021579225.2 mRNA upstream 198518 19544358 ~ 19570513 (-) False LOC110501564
XM_036958932.1 mRNA upstream 198518 19544358 ~ 19570546 (-) False LOC110501564
TU2044318 other downstream 16893 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 159568 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 161012 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1434801 17869529 ~ 17903951 (-) False G1783895
TU2044972 other upstream 310442 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 999859 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 1044676 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2444916 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 3072290 22418130 ~ 22419498 (-) True G1789581

Expression Profile