RNA id: XM_036958935.1


Basic Information

Item Value
RNA id XM_036958935.1
length 3865
RNA type mRNA
GC content 0.48
exon number 22
gene id lss
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19530398 ~ 19544185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAGGGCAGTCCTCTGTGGCACAAGTTAGTGTTTATCCAACGGAAATATTTTGAAAAGAGAACTTCAATTCCCACAGTATCACAAATGGGGGCCGATCCTGTGGATCAGCTGAAGTTTGCGGAGGATTTAATTCATTCATAAGGTTTTAATGATGACCGAGGGAACATGCCTTCGTAGGAGGGGGGGGCCGTACAAGACCGAGCCAGCGACAGACCTGACCCGCTGGAGGCTGAGTAACACAGAGGGCAGGCAGACATGGCGCTATGTAGAGGATCAAGACACATCAGACAGGGAGCAGACTATGCTTGAAGCCCATTCACTTGGTTTGGATACGAGTAAATTCATCCCTGGCTCTCCCTCAGCCCACACTGCAGTGGAGTCAGCCCTGAAGGGCATGGCATTCTACAGCCAGCTCCAGGCAGAAGATGGCCACTGGGCAGGAGACTACGGAGGACCCCTCTTCCTGCTACCAGGTCTCCTGATCACCTGTCACATAACCCAGATCCCTCTCCCTGAGGCTTGGAAGAAGGAGATGGTGAGATACCTGCGCTCTGTCCAGCTGGCTGATGGAGGCTGGGGCCTACACATTGAAGACAAGTCCACAGTGTTTGGCACGGCCCTCAGCTACACCACCCTGAGGATTCTGGGAGTGGGACCGGATGACCCGGATATGGTTAGGGCCAGGAACAACCTGCACAGCAAAGGAGGCGCGGTTGGCATCCCCTCCTGGGGTAAATTCTGGTTGGCCATCCTCAATGTGTACAGCTGGGAAGGAATGAACACGCTCCTCCCGGAGATGTGGCTGTTCCCTACCTGGTTCCCTGCTCACCCATCCACTCTCTGGTGCCACTGTCGCCAGGTCTACCTCCCTATGAGCTACTGCTACGCTGTCAGGTTTGCTGCCAAGGAGGACCCCCTGGTGCTCAGCCTCAGACAGGAGCTGTATGTCCAGGACTATGCCACCATCAACTGGCCTGGTCAGCGGAACAATGTGGCAGCATGTGACATGTACACACCACACAGCACGCTACTCACCGTGGCTTACATGGTCATGAACGTGTATGAggcccaccacagcagcagtctacgaGGAAGAGCGGTCAAAGAGCTGTACGACCACATACAGGCTGACGACCGTTTCACCAAGTGCATCAGCATCGGCCCAATCTCCAAAACGATCAACATGTTGGTGCGCTGGCACGTGGACGGACCCTCTTCCGCTGCCTTCCAGGAGCACGTGTCCAGGATCCCAGACTACCTCTGGCTGGGATTGGATGGTATGAAAATGCAGGGAACCAATGGATCACAGCTATGGGACACGGCTTTCGCAGCTCAGGCGTTCCTAGAGGCAGGGGCTCAGGACAGCCCCAGGTTAGAAGAGTGTCTTAAACACGCCCACCAGTTCCTCACCATCACACAGATACCAGACAACCCCCCAGAATACCAGAAATACTACAGACAGATGAACAAGGGAGGGTTCCCCTTCAGCACGCGGGACTGTGGCTGGATCGTGGCCGACTGCACGGCAGAGGGCCTAAAGTCAGTGATGCTTCTGCAGGAACACTGTCCCTTCATCAGTCAGCACGTCCCCTCAGAGCGCCTGTGTGACTCCGTCAATGTGTTGCTAAGCATGAGAAACAGAGACGGCGGTTTTGCCACTTATGAGACCAAGCGAGGAGGGAGACTGTTGGAGCTACTCAACCCCTCAGAGGTGTTTGGTGACATCATGATAGACTACACCTATGTGGAGTGCACCTCAGCAGTCATGCAGGCTCTGAGACACTTCCAGCACGTGTACCCTGAATACCGGACAGAGGAGATcagGTCCACTCTGAGAGAAGGATTGGAGTACTGCCGGAGGGTGCAGAGGCCCGATGGGTCATGGGAAGGATCCTGGGGAGTGTGCTTCACCTATGGGGTCTGGTTCGGCTTGGAGGCCTTTGCCTGCATGGGTCACACCTACCATGATGGcGGTGGTGTGTGTAAGGAGGTGCAGAGTGCCTGTGACTTCCTGGTGGCCCACCAGATGGAGGATGGGGGCTGGGGTGAGGACTTTGAGTCCTGTGAGCAGCGTCGCTACGTGCAGAGTGCTAACTCCCAGATCCACAACACCTGCTGGGCCCTGCTGGGCCTCATGGCTGCTAGGTACCCAGATGCACAGGTGATTGAGAGAGGAATACAGCTGTTGGTTGACAAGCAGCTGCCCAATGGAGACTGGCCACAGGAAAACATCTCGGGAGTATTCAATAAGAGCTGTGCCATCAGCTACACTTCCTACAGGAACGTCTTCACCGTGTGGACGCTGGGACGCTTCTTTAACCTCTTCCCCTCCAGCCCTCTGGCCGGGAAGGTGAAGCtgtgaggtcagaggtcacctAAAGGTCAAGAGGTCAGCAACGATTGGAACAGTGCCCTTTCTAATCTATACATAAAGAACGGCCGtgaacagggttggggagtaatggattacatgtaatccgttaaatgTAACTGAttctaaaagtattttttttcCTGTAATCcgttaccagctaaaatattgtaatcagattacagatacttttgaaaaactagatgattacttcatTCTCAATAACATTCAAATCATCTTAAATGTGTTCTGCTTGAgagagtctgaccacaagtcagagaccattacacaccaaatgtgtttaatGATatgcgggaaaagagcaggaataggcttttgtaggctacagtccaagctatgtcttccagtGGTGCGACTGCTGTCAGCATCAAAGATTATTCATCCaatttgaataaacgcttggaggtaaggatgacagcagtgttgTAGCCTACGGGTGCtaggatatcacttattattgatatctatacagctcattgatgtgaatcacactgctgctcaaTCTAATTGGTGCTGATAAAAGAAAAATGCCCATAGGCCTaacggacacatgctcaaacacacacacttttaagggacttaaacagctgcaaatgattgagatatcaaagtgtcaccaacaaaagcttaaacaataggcctatagcaaatgcagcatatggaaatcatttttcacatgcaaatagcacttaGTCCTATTTTTGAAGACCAATGGGGTATGAAATCAATTGGAAGGATTGGAAATCTGACAACTTGTGGTTTCAATGTGAAGATGTAGCCTACTCATTTTATTATCTATATTAAAGTAGAAAGCTATCGGTTAAAAGAAGCCTACATAACTTTAAAGTAAAATGCAACATCCGTTTATTGCTAGAACTTTGTAAactctaacattgatttatcctgcaatagatgtcattcaattggtaatattcatttttgtcttcttctaatgcctcttattaaggggaaagtaatctaaaagtaacttaaGGTttatcagattacgttactgagtttgggtcaTCCAAAAGTTAGTGATTACAATTGTGGACAGGTAACTAGCAACTGTAACAGATTGCATTTCTAAAGTAACCTCCCCAACCCTGTTCGTAAAAGTGACGTTTTTCAATTTTTCTACTGGGTGAGTCCTGAAAATACCTCAACCTTGGGATCACCTTACCTTGCCTGCTATTTTAACATTCCTCTTGCCTTACATTTTGGTGGGACTGAACTCTTTGAAACATACCTTTTAAGTTGCTATGTGAGAAATGAGGGTGTCATTTTGGCATCTGTATAATGAAATAAAAATCGAGCCCGTAAATCAATCTGTAAATAGTGCTGAAATAAGTGTTTCCATGTTGCCTATTAATATCAACCTTAGTTTCTGAAAATCTATTGATGTAATTGATTTGTAATTAAATCTTATTTTGAAATGCAGAATAAAGTCATTTTGGATGGTTTCACTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016866 intramolecular transferase activity molecular_function

KEGG:

id description
K01852 LSS, ERG7; lanosterol synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044431 lncRNA downstream 39665 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 44063 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 210559 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 238810 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 246019 19284031 ~ 19284379 (-) True G1785745
TU2044997 lncRNA upstream 142305 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 143580 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 430135 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 444683 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 538201 20082386 ~ 20082662 (-) True G1786646
XM_021579223.2 mRNA downstream 4899 19523061 ~ 19525499 (-) True LOC110501563
NM_001124282.1 mRNA downstream 87692 19439196 ~ 19442706 (-) True mstnb
XM_021579218.2 mRNA downstream 184558 19338752 ~ 19345840 (-) True ormdl1
XM_021579219.2 mRNA downstream 184562 19338752 ~ 19345836 (-) False ormdl1
XR_005038798.1 mRNA downstream 199752 19323005 ~ 19330646 (-) False osgepl1
XM_021579225.2 mRNA upstream 173 19544358 ~ 19570513 (-) False LOC110501564
XM_036958932.1 mRNA upstream 173 19544358 ~ 19570546 (-) False LOC110501564
XM_021579226.2 mRNA upstream 173 19544358 ~ 19570550 (-) False LOC110501564
XM_036958933.1 mRNA upstream 173 19544358 ~ 19570630 (-) True LOC110501564
XM_036958934.1 mRNA upstream 28260 19572445 ~ 19603558 (-) True LOC110501567
TU2044318 other downstream 208539 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 351214 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 352658 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1626447 17869529 ~ 17903951 (-) False G1783895
TU2044972 other upstream 112097 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 801514 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 846331 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2246571 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2873945 22418130 ~ 22419498 (-) True G1789581

Expression Profile