RNA id: XM_021579225.2


Basic Information

Item Value
RNA id XM_021579225.2
length 7360
RNA type mRNA
GC content 0.57
exon number 28
gene id LOC110501564
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19544358 ~ 19570630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGGGGAATACTGAAAAAGTAGGTCACTAGCTATCTTGTTTGAAACAATATAAAGGCTCAATGATGCTTCACTGAAGACACTTCAAATGGAGGAACACACACTTTCCTCAACATGCCTTGCAGCAACCTGGACTCTAGAACGGCTTATGTGAGTTCAAGTGAATAAGTGACTGCCCTTGAGTACAATTGagactattctgacatttccacCATGAATCCCAATAGTCTGTTTGGCAGACAGCAGGGAGGAGCTTTCCAGGCCCCCAGCAACACTAACAAGACTGGTGGCATGTTCCAGGCCTTCAGACAGGAGGGTTCCACCAACCCTCCACAGAATGTAGCATTTAGGCAAACTGCAACATTCGGGCAACCGTCTGCCTTCAGTCAGCCTTCAGTCTTTGGTCAGTCTCCGGCATTTGGGCAGACGCCTTCACTTGGACAAGACTCTGTTTTTGGGCAAAGTGGAGGACTAGGTCAGGCGTCAGGGCAGACCTCGACATTCTCTTCAATAAGTCAGCCTCCAGCCTTTGGTCAGTCCTCATTGGGGCAGGGTAGCTCTGGGTTTAGTGGTGCTCCCCCGCCATCGTATGTTCAGGCCACCGGACAGATTCAGAGTTCTGGGTTTGGACAGATGCCTGCTTTTGGACAGAGCGCTGCCTTTGGGCAGCCACCTGCATACGGGCAGCAGCAGGCCCCGGCATTCGGCCTCTCCTCTGGGATCTCCCAAGCTTCCTCTGgccccaccactaccaccaccgcAGGGTCGGCACAGCCTTTGAGTTTTGGCCAGTCGCCCTTTGGCCAGTCGCCACCCAGCGCTACGACCACCTCCTTTGCTACAACTCAGAGTGTTGTCCAGAGTGGAGGCTTCAGCACGTCAGAATTCAGCTTCAAGCCGTCCAACGAGGTGCTGTTTAAGCCCATCTTCAGTGCCAGCCCAGAGCCGGCTAACCCCCAGCCCGCCTCTGCATCCGAGCAGCCCTTCGGTGGCACAACCACCACCCAGCCCTCTTTCAGCACCAAGGACAGCAGTGGACCAGCCAGCTCAGGCTTCTCTCTCCTGACCGGAGCCAAGAGTGGCCCGCTTGGCTTCAGCTTCTCCCAGCCGGCGGTGGCCCCCTCCATCTCCGCTTCCATTGCCACTACCAGCCTGGCCCAGAAAGACCCTCTCAGCATAGGCTCCGGAAGGAGCCTGCAGTTCACATTCTCCCAGCCATCCGCTCTCTCCAGCACTAACTCCAGCTCCAGCACCGCTGCCCCCCAACCAGCTCCGGTCCCCAGCAGCCCCTCCTCCTTCAGCTTCTCTACCAAAGTCCTCCAGTCCCAGCCCGCGCCCCCGATGTCCCTGTTTGGAGGAGTCGGCTTCGGCCAGACTTCTACATTCGGAGACCTCAAAACCGAGGCCCAAGCCGAGGAGAAAGTTGGCGATGAGAGCACCAGGGAAGTGACCATGTTGGGGAGACTTGGAAAAGGAACTAAGCGGAAGGAGGAGCCAGTGAGTCCCAAAGCCACTTCAAGGAAGCCTGCCCAATCAGAGGACGCCCAAGCTGAAGCCAGAGCTGACTTACCCAGACACCCCTCCAAACGGCCTCTCCTGAGGTCCTCCCGCGGCCCCGTGGGTGGACTCTTCTCCAGGGCAATGAGTGGCATTATGAAATCCACAGCCAACTCAGTGAGGAGGGACCCCGTGAAGGAGGAGCAGCAGCCTCcaggatggggggagggggagagagcagaCACACAAGCTCCGATCAGTCTCAGACCCGCTACTCCTCCCAGTGCTCAGGCCCCCACCAGAGAGGTTCTGGAGAAAGCAGAGGTGACTGGTTCGGTGGAAGCCCCCGACCCAGACGCTGAGACCAAGACCCCAGCTAGGAGAAGGCAGCGCAGCGAGAGCACGGACAGCCTGGGGGGCATGTCCCCCAACGACGCCACCATCCTCCAGTGCAAGAGCATTCCACTCAGCCTCAACAAAAAGAACGTCATAGAAAAGCACTTTGGCCGCTTCGGGAAAGTCTGCCGGGTCTACTGCCGACCCCATAAGAACCTGGCTATCGTCCACTTCCAAGACCACGCATCAGCAGCAAAGGCAAAGAAGAAGGGTAAAATGCTGCACAGACAGGAAATTGTTATCTTCTGGCAGAGGAAGAAACACAGCCCGGGGAAGAAAGGCGTTCGAGccccagagggagaggaggaagaaagggACAGGGACAACCAGGTTTCAGACACCAGTCTGGGGGGcttccagtcctcctctccactGAGGAAGCCACTCCCCAGAGCCCCTGCCCTCAGCAGCACTGTCAACCTCAGCAGGAGCTCCCCAGTGAAGAAGCCGTCCATAGCCAAGTCCCTGCAGTTTGAAAGCGAGCCCCAGCAGGACAGCAGCTCCGAGGGCCAGAGCTCTGAGCGCCCTgtgccctcctccctcctccacctgatTGGCCAGCTGGCTGAGACAGCCGAGGAGAAGTACCGCTTCCTGGAGCAGAGGGACAAGATCTTGCGAGCTGGGCGGCCCAAACGGACAGACCTGGAGCTGTCTTTCTTTGTGGGGACATGCCCAGACATGTGCCCCGAGAAGGAGCGCTACATGAGGGAGACACGCAACCAGCTCAGTTGCTTTGAGGTCGTCCCAGACACTGATAGGGTGGACCACGTGGCGGCCATCAAGGAGTACAGCAGGTCGTCGGCGGACCAGGAGGAGCCCCTCCCCTACGAGCTGCGGCCCCTCCCCGTGCTCAGCATGACCATGGACTACCTCGTCACCCAGATCATGGACCAGGGCCACGACAACTACCGCGACTGGTACGACTTTGTGTGGAACAGGACCCGCGGCATCCGTAAGGACATCACCCAGCAGCACCTGTGCGACCCGCTGACGGTGTCGCTGATCGAGAAGTGCACCCGCTTCCATGTGCACTGTGCCCACCACCTGTGCCAGGAGCACATGATGACGTTCGACGCCAAGATCAACAACGAGAACATGACCAAGTGCCTGCAGAGCCTGAAGGAGATGTACCAGGACCTGTCCACCAGGGGTGTCTACTGCCCCCAGGAGGCTGAGTTTCGCCAGTACAACGTGCTTCTCAAACTAGACGTTGGGGACGTCCTCCGTGAGGTGCAGCAGTTCAGGGATGAGGTGCGCAACTCTCCAGAGGTGAAATTTGCCGTGCAGGCATTCGCAGCTCTCAACAGCAACAACTTCGTACGCTTCTTCAAGCTGGTGAAGTCTGCCTCCTACCTGGCGGGCTGCCTATTGCACAGATACTTCAACCAGgtgagggGCAAGGCCCTGGGGACCCTGAATAACGCCCACACAGCGGGCCTTCAGAGGTCCACCATCTTCCCCCTGGAGGATCTGGTGCGCATGCTCATGTTCGAAGACGCCGCTGAGGCCACAGACTTCATCCAGCAATTCGGCCTCAACGTTAGTGGCGGCTTGGTGGAACTGAGCCGCACGGCCTGGCAGGAGCCAGACTTGAACCTACCCCAAGTGAAGTCAGATGTCATCATGGCCAAGAGGGCTGTGCTAATTGGGGAGGTGGTAAACGGAGGACCACTGCCCAACCCGCCCCAACATGCCCCCGTCTGCAGCTTCGACGCCCACAACAAGTACTGGGGGGAGGGTCCGCTGGCAGAACCCACACTCTTCAGGAGCAGCCCGGTGGCTGTAACGGTGCCAGCCTTCACCCTGCAGAAGCCAGAAGTCAAGGCCCAGCCGGAGGTTGAGCTCCAGCCGCAGAACAAACCTGTCATGCTGCTGGCAGAGCCACGACTCTTCGGGGATCTTCCACCACCGTACCCCGGCCTTGCCACTGCCACCGAGCCTGCCCAGCCATTGCAGGGCACAGATGAGACAGGGGAACCAGAGCCCGCCCAGCCCACTGTCCAGGTCCACCCTGCAGCAGATCTCCAACAGCAGCTGTTCCAGCCCATTGATGTTGCCCAGACCCAGCCTGTCAGACCCCCCTCGCCCCCGCCCAAACCTGAGCCAATCTACTCTGACGagGACATCCTGGCAGAACTGGAGTGCGTGGTAGAGGAGGTGCTGGAGGCGGTGGTGCAGGAGGTTGCCAGCGCTGGGGCCGACTACGCTGCAGCCGCTCTTAGTGCGAGCAGTGTCCACATGGAGGCGGTGGTGAGCGAGGTGGTGGAGCAGATGCTTTGGGAGGTGTCCACAGCCGAGGTccaagcagagcgagagagactcgCTGAGGAAAAACGCAGGATAGAGGAAGCCAGGAGAAAGCAGGAGCACGAAGTCTTCCTGGCCCAGTTTAGTGACTCTCTCTGTTCTGAGATCAGCCAAGAGGTCTTGACCGAGTGTATCCAGGAGACTGCCGCCTCCGAGATCCAGTTAGCCATGGAGGAGGAGGCAGCATGTGTGGCGCGCTGTTCTGAGGAGGTGTGCAGCTTCCTGGTGGAGGAGACCCTGGATAAAGAGATATTCCTCATGGTGGAAGACATCCTGGAGGCGGAGCTACAGCGCATACAGAAGTACATTAAGAGGTGGCGCGACGTGGTGGCGGTACGCAGGCAGCTAAAGAGACAGATGCGGGGCTTCCCTGCCGCCCCCTGCTGTGTGGACCCCCGCTACAAGCTCAAAGCCCTGGCTCCCAGTGCCCCCTCCCAGCCCTCTATGGACTGTCTGGCCAGGGGCATGGTCAACCTGGGCAATGCCGGCTACATGGCCCTGTCCAGCACCAGGTTGCTAAAGATGAGACAAGAAGCAATCCATCAGATGCGAGTCCACTTCTACTACCAGCAGCTGTTGAATGAGTCAGTGTGGACTCCTCTAGACATGCCTACGCTGGTGGTTGAGAACGTTCCTAACCCACCTGACAGAATCTTCTGGAAGGCTACCCTGCTGTTGCCCAGCGACCACGAGAGTGTTGCCAGCATTGCCGACAGGATCCTGACAGACTGGCTGGAGACGAAGTTTGGCGTAGGTGAAAGTGCAAACGACACCGAGAAGGAGCAGGAGGGGACACTGAGGACTCTCTGCATCACCAACGGACTCAGGGAAGCAGGAGAGAAGACTCACAAAGTACACATCAGCATCAAGGCATCTCGGGGCCCGCTGAGTGAAGAGGGCCTGTCCAATTTGGAGGAGGGCCAGGAGCTCCAGGGTACAGGGGCTCTGCTGATGCTGCTGCCTGCCCCCAGCCCAGGCAGCGAAGACCAGGACGTGCCCATGCTCTCCGCTCTGCTCCAGCTCAAACAGCTCCAGCAGGCCAACATCTGGGACTGCTCGCTGCCCCTTGCCATATTGGTGCCTGGCCCCCACAACACACAGAAACTGGAGGAAGACCTGATGCTCCAGACGTTAGTTGAAGACGGTCTGATATCAGAACACGTGTTCGTCCACATCCCAGAGACCACCAGCGACCTACAGGGCTCAGAGCAGGTGAGCCAAGCGGTACGCTGGCTCTTGGCACGTGCCCCAGTGcccgccctcctctcctcccagaccCTGGTGCACTTCGTGGAGGCCGGGCTAGGCCGCGAGTTCAGTGCCCGCCTCTACAGCCACCGGCAGGACCGGGCGGGGGCAGGGCTGGCGCGCCAACACCCAACCCCTGTCATTAAGCTCTACAATGCTGTGCTGGCATTCCTGGCTGACCTAGTGTCTTCCCAGTACCTCTCCAGCCTGTCCTGGCCTCCGGGGGAGTTCGCCCTGCCTGAGACCCGGGACTTGGTGCCACACCTGGGTTGGAACTCTCCCCAACACCTGGCCTGGCTCCGGACGGCTGTAGTCAGCTTGCAGATACCCAGCTGGGACATTCCCGCTAACACAGCCTCCTGGCCCCAGCTGTGTTCCGCCATCTTCCAGTATGCCGGCCAGATCCCAACTTCACGCCACAGCCAGCCCCTCCTCATGTCCCGTCTGGAGAACCTACTGGAGAGGGTGCGCTGTTCCACGGCTGGAGCCCAGGACCACTGGGAGGAGGAGGGCCCATCCTTCCAGCAGGTCCCCTGGGACGAGGTGGTGGCTCTCTGCATAGACCATAAGCTGAAGGACTGGCAACCCCCTGACAGCCCAGTTTGTGACGATGCAGTGACAGAAGATGGAGAGGTCCTGGTCTACTTCCCCAAGGAGGGACTGAAGGGCTTCCAGCCCCCGGCAGAGTGGACGGAGGCGGTCAgcctcacacacagagagaagcagCAGGAGACACAGGGAGACAGTCCAGGAGGCCTCgcagctctctctcccttcttcagAGCCAGTCCAGGAGGCCTCGcagctctccctcccctcagacagaaGCTGTTCCGGAGCCTGGTGGATCGTCCGGACCGCTTTGCCCCCTGCCACACTCTGGACATCACACACACCCCCTCACTCCGGGACCTGCTGCCCCACAAGGTCCTCCATGGTCTCCAGGAGGAGAGGGCACACAGCCAGAGGTGTGAGGAGCAGCTGCAGCGCTGGCTAGAGGTAGAGCCCTTGgactctctctccatgcccctcTTCATGCCCTCTAGCCTGCTCTCCATGACTAACATCATGGCCCCCATACGTACTTCTGGTGGTGCGTCCACTGCTACACAGGAGGCAGAATCAGAAGACCCTTTGGAGAAAGCAGAGCGCGATTGGCTCAAGGGTGCTCCTGTATCCATGGCGCAGCGCCTGAAGGAATTGGATAGGCTTTTATTAGCCAGTCGAGAGGAGGAGCTTGCGTGCGGGCTCAAGCTGAACAGCTTATTGAACATTGTCGAGGACTGAATCTCATGTCATATCACACACCACTTAGTTAAAGGCCTTAGCTTTTGCTTTTTGGACTTGTTGCCATCTGAAAATCTGTTATTGTGGTCAGAAAATGTAAACCCATAATATTGTCACTGTGTTtttacttttttaaatgtttgttttctaATTGAGAAGAAAGATTCATTGCTTTATCTTTTTTAGTTTTGTTAAGTAGTTTTGCATTATGAAAGGGAACTGATTTGTTCCGTGTGTCTGCCTTCCTATAACGGGTGGATCTCAGTGACCTACACATACAGTTGCTTGACAGACCTAACATGACTTAAGTTTATATCCACGATTATGTATTCATTGTAATTAGTTGCTTAGTCTTCTtgtagatgttttttttaaaatcccGAGGATGGTTTATTATCATATTTCTCCATATTAACTGATTTAGGGATATTTTGTGGATTGACCCAAATGAATTACTTTGGTTATGTTTGTGCCTATGTTTCATTTTGAGCTATATTTGTCTAAAATGCTGGGGTTATATTTGTCATAGTAATCTAAATAAGTCTTCTGATGAATGTTGCCAtatagtgttcttaactgacatgcctagttaaataaaggtaaaataaatagatATGTCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044431 lncRNA downstream 53625 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 58023 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 224519 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 252770 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 259979 19284031 ~ 19284379 (-) True G1785745
TU2044997 lncRNA upstream 115977 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 117252 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 403807 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 418355 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 511873 20082386 ~ 20082662 (-) True G1786646
XM_036958935.1 mRNA downstream 173 19530398 ~ 19544185 (-) True lss
XM_021579223.2 mRNA downstream 18859 19523061 ~ 19525499 (-) True LOC110501563
NM_001124282.1 mRNA downstream 101652 19439196 ~ 19442706 (-) True mstnb
XM_021579218.2 mRNA downstream 198518 19338752 ~ 19345840 (-) True ormdl1
XM_021579219.2 mRNA downstream 198522 19338752 ~ 19345836 (-) False ormdl1
XM_036958934.1 mRNA upstream 1932 19572445 ~ 19603558 (-) True LOC110501567
XM_021579233.2 mRNA upstream 85250 19655763 ~ 19666201 (-) False znf142
XM_036958937.1 mRNA upstream 85250 19655763 ~ 19666201 (-) False znf142
XM_021579240.2 mRNA upstream 173207 19743720 ~ 19761865 (-) False vil1
XM_021579239.2 mRNA upstream 173207 19743720 ~ 19763860 (-) True vil1
TU2044318 other downstream 222499 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 365174 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 366618 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1640407 17869529 ~ 17903951 (-) False G1783895
TU2044972 other upstream 85769 19656282 ~ 19659100 (-) True znf142
TU2045476 other upstream 775186 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 820003 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2220243 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2847617 22418130 ~ 22419498 (-) True G1789581

Expression Profile