RNA id: XM_021579232.2


Basic Information

Item Value
RNA id XM_021579232.2
length 2080
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110501568
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19603742 ~ 19627954 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAAAACCCACCAGAAAGAAACAGCGAGTCGGGGGTCTCGCTTCCTTTTCCGTCTCTGATTCAACAAATCAACAAATGAAATGCATAACTGTCTTACTAGCTTCCTATCGGTATCGACCTCCCATGTAAACTAAGGGTTATATTTTGTTTAAAGATAATAACTATGTTGCTTGTGTTATAGCGTTAGATAAAGCAGATATCATTCTCAAACAGAGGTTCGCAGCATGTTGGAATAATAAACGCGCGGGTAAAGGTTTAAACGTAGTTCCAGTTCCGATGTGACCATTGTAGCAAACTAAGACCAAATATATTCTGCTAAaactaagctagctagctaggtaactagTTGTagtttttgttttatttgtagCTAGCTCAACAGCTTACGGGAGATCATATCCAGACGCTTCAGACAATGCTGGCTACAGGCGCAGCTGCAACCACAGCCCTGGTTCAGGTGGATCGGGAGAAGATCTACCAGTGGATCAACGAGCTGTCTACCCCCGAGACCAGGGAGAATGCCCTCCTGGAGCTCAGCAAGAAGAGGGAGTCTGTCCCTGACCTTGCACCCATGCTATGGCACTCTTGTGGAACCATTGCTGCCCTCCTGCAGGAAATTGTGAACATCTACCCCTCCATAAACCCACCAACTCTGACAGCCCACCAATCCAACAGAGTATGCAATGCCCTCGCGCTCTTACAGTGTGTCGCCTCCCATCCAGAGACTCGGTCTGCATTTTTGGCAGCACacattcctctcttcctctacccctTCCTGCATACTGTGAGCAAGACACGCCCATTTGAGTACCTGCGCCTCACCAGCTTAGGAGTCATAGGTGCTCTGGTCAAAACAGACGAACAGGAGGTGATCAATTTCCTGCTTACCACAGAGATCATCCCTCTATGCCTGCGCATCATGGAGTCAGGCAGCGAACTCTCCAAAACGGTTGCTACTTTCATACTCCAAAAAATTCTGCTGGACGACACCGGGCTGGCGTACATATGCCAGACCTATGAACGCTTCTCTCACGTGGCAATGATTCTTGGGAAAATGGTGCTGCAGCTTTCGAAGGAACCATCTGCACGTCTGCTGAAACATGTTGTACGCTGCTACCTTCGCCTCTCTGATAATCCAAGAGCGCGAGAAGCACTGCGCCAGTGCCTGCCTGACCAATTGAAGGATGCCACATTCGCCCAGGTGCTAAAGGACGACACCACCACCAAGCGCTGGCTGGCCCAGCTGGTCAAGAACCTGCAGGAGGGCCCGGTGACGGACGGCCGAGGCATCCCCCTGACCGCACAGTAACCTCATCAACCCCTTTGACACTACCTGAGGAACAGTACCGTGCTGGCAGAGCCACAGAAGAAAAACATGATTAGTACTAATTTTAAAGTACAGTGTTCATATTTAAGAGTAAATGTTCTATAAGAGGTGCCGGTACTCAAAAGAGTAGAAAATAATAGGCTCGGTACTCTGTAGTGGTGTGCGCCTGTCCAATTTAACCACTGTCCAAGACCAGGAGAAGATGATGCTGTGTGGAACCATAAACTCTGTGGCTCACTTGTTGTTGCCGCTCACCTGGCATTCTCCCTGAGACGTTCTCACAATGCTTCCTCAATGTTTATGGAGGTGTTTGCGTAACATTTCAACAGGGTTGAACATTGACGTCATCAAAAAGGAAATCCACGTTGGTCTGGTTTTAACCTGGTGTTTCCCACTGTTTTTGTTCTGTCCTGAACCAAAACCACTACAGGCATTTTCtaagtgttttttttatatttgtatatatgtTTTCTTTTAACCATCTAGCGCAGGGTTCCCTGAATTTGGCCCACGGGAGATTTTATTTGTCACCCCAAGGTCcccagatacccccaaaaacgtgTCATTTTAATGCATTTTCTTTTTACTGTTGtacataagactgtaaaaacaccagtaAATCAGCTTTAAGTGAAttgggaaatctgttccaaagtattcccatgtataatagagatactgtatgtgatggTATACAAATGTAAACCAGGTTTTTAATAAAtactatatctgtttgggcttcttgccgTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044115 lncRNA upstream 29977 19538704 ~ 19573765 (+) True G1785578
TU2044114 lncRNA upstream 31303 19570580 ~ 19572439 (+) True ybey
TU2044079 lncRNA upstream 101215 19502324 ~ 19502527 (+) True G1785544
TU2044078 lncRNA upstream 101440 19502032 ~ 19502302 (+) True G1785543
TU2044070 lncRNA upstream 107518 19495989 ~ 19496224 (+) True G1785535
TU2044522 lncRNA downstream 34251 19662205 ~ 19663022 (+) True G1785945
TU2044528 lncRNA downstream 37046 19665000 ~ 19665218 (+) True G1785951
TU2044529 lncRNA downstream 37494 19665448 ~ 19665660 (+) True G1785952
TU2044530 lncRNA downstream 37956 19665910 ~ 19666169 (+) True G1785953
TU2044538 lncRNA downstream 45646 19673600 ~ 19673834 (+) True G1785961
XM_021579228.2 mRNA upstream 30796 19570604 ~ 19572946 (+) False ybey
XM_021579229.2 mRNA upstream 30810 19570662 ~ 19572932 (+) False ybey
XM_036958930.1 mRNA upstream 152620 19444418 ~ 19451122 (+) False LOC118943580
XM_036958931.1 mRNA upstream 152620 19445479 ~ 19451122 (+) True LOC118943580
XM_036958929.1 mRNA upstream 189045 19350624 ~ 19414697 (+) False pms1
XM_036958938.1 mRNA downstream 2206 19630160 ~ 19655758 (+) True plcd4b
XM_021579235.2 mRNA downstream 51349 19679303 ~ 19685750 (+) False LOC110501572
XM_021579237.2 mRNA downstream 61062 19689016 ~ 19726868 (+) False LOC110501573
XM_021579238.2 mRNA downstream 61209 19689163 ~ 19726868 (+) True LOC110501573
XM_021579241.2 mRNA downstream 106333 19734287 ~ 19743949 (+) False zgc:66484
TU2044113 other upstream 31303 19570580 ~ 19572439 (+) False ybey
TU2043879 other upstream 406028 19186488 ~ 19197714 (+) True LOC110501548
TU2042946 other upstream 836602 18766319 ~ 18767140 (+) False G1784476
TU2042944 other upstream 836602 18766458 ~ 18767140 (+) True G1784476
TU2042522 other upstream 1381016 18101931 ~ 18222726 (+) True kalrna
TU2044524 other downstream 33155 19661109 ~ 19661926 (+) True G1785947
TU2044933 other downstream 653059 20281013 ~ 20281854 (+) False asb1
TU2044940 other downstream 655227 20283181 ~ 20284571 (+) True G1786330
TU2046423 other downstream 1506311 21134265 ~ 21136477 (+) True G1787719
TU2047590 other downstream 2367410 21995364 ~ 21996093 (+) True G1788811

Expression Profile