RNA id: XM_021579233.2


Basic Information

Item Value
RNA id XM_021579233.2
length 6044
RNA type mRNA
GC content 0.53
exon number 8
gene id znf142
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19655763 ~ 19666201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGGGCGCAGTTGATGTTAGTTCCTGGTCTTCAAATGCAGCGTCATTATTAATGCTAGACCAAACTTAAAGGACCGAAAATGAATTTAATTGTCCACAATATACCTAGTTAGCTATATCTACATGCTGTACATATACGCCCAGAGTATGCAAGTAATTATGATGAGATTCTTTCAACTGGAAATACTTAATGATTGCTCCACCAAAATAAACATAGTGATGGCGTCGTTTGGTCATTGAAGTGGCGATTTAGCAAAGTAAAAACAATCTACCCAGCTTCAATACCTTATTAAGACAAATGAGCCAATGGAGACTGAGGGGTTGTGTCTCTGTGAAAAGTGCGGGAAGGAATTATCAGATAGCAGCCGCCTTTCCTCTCACCTTTGCACTGTGGACTTCACCAAAAAGGGACAGTTGACCCGTTATAAGTGTCCTTTGTGCGATGAGGTCTTTACCATGCCAGGTGCACTGAAACACCACTTCCAAAGCCATCGGAGGGAGGAACTCACAGGTCCGTTCCACTGCTCCGAGGAGGGTTGCCAGTTCAGCACCTTACACCGGTTGGTGTACCAGGAACACCTGCACTCACAGCATGCTCTCACCCTCGTCTCTTGTACCTTCCGGTCCTGCACCTTGGCATTCTGCACACGTTCTGAGATGGAGGGCCACAGGCGTATCCATATGCCTTTCCACTGCCCCCGCTGTGACTTTGTGACCGCTCATGCTAAACAGCTGAGTACCCATGGTGTGGAACATGACCGTCCACTTGCTGCACCTGAGGGTGACAAGGTGCCAACAACGACAGGCCAGGGTGGAAACAGCCAATCGGCTCTTGAGACCAGCTCTGGAAGGCCAAAAAGGGCCCTTAAACGCAATCCAGCTTATGTGTCATCATCACAAGAAGATGATGAAGAGACACAGCAGCACAACATCGACAATAGAGCCAGAGAGGAAGTGCAAAAAGACAAAGCAGCTACGAACATCAATGAGAACCCATCTAAAGATCATATTATGGCAGGCATGGAGCATATGTATCGCACTCACATCTGCCCCGAGTGCCGCCGCTGTTTCAAGATGCGCTCCCACCTGCTGGAgcacctccacctccacttccCAGACCCCAGTCTCCAGTGCCCCACCTGCAACCATTACTTCACCAGCAAGAGCAAGCTGCGCATCCACATGCTTCGCGAGTCTGGCCAGAAGGTCCATCGCTGCCACCTGTGCGACTACGCCTCTGTGGAGCGCAACTCGCTCCACCGCCACCTGGCCAGTGTGCACTCCAACGAGGTAGGGGGTGACATCCACCCGGAAGTCTACCCCTGCCCCACCTGTGGCCAGAGCTTCCGCCAGAGCCAGGCGCTCAAGTCCCACATGAAGTCTCACCACACGTCGCGGGACAGCCAGCCACTGGCCTGCTTCCAGGAGGGATGCTCCTTCAATACCTCTGACCGGAAGGAGCTCCAGAGACACGCAGCCGATGTCCATGGAATCAAGGCCGTAGAGTGCCGCCATCATGCCTGCAACGCCATCTTTGGTAGCCCCCAGGACATGGAGGCCCATTACCGGACACACTTGGCCTTCCACTGCTCACAGTGCGACTTCTCCTGCTCCAACAAGAGCCTCTTCCGGCAGCACAAACTGCAAGGCCATGCCGGGGACGAGGAGTTGACCTGCAACTTCTGCCCCTTTGCCACGTTCAATCCTGTGGAGTTCCAGCAGCATGTCGGCCATTTTCACGCCAATGAGAAGATCCACCGGTGCCATCAGTGCAGCTTTGTCACCGCACACAAGCGGGTTCTACGACGGCACATGCTGATGCATAGTGGTGAGAAGCCCCACAAGTGTAACCTGTGTGACTTCAGGTGCCGTGATGAGACCTACCTCTCAAAACACATGCTCATCCACTCAGATGACAAGAATCATATGTGCTCTGAGTGTGGATATGTCACCAAATGGAAACACTACCTGAATGTGCACATGCGCAAACATGCTGGTGACCTCAGGTACCAGTGTGACCAGTGCTCCTACCGTTGTCACCGCACGGACCAACTGAACAGCCACAAACTCCGACACCAGGCCAAATCACTGATATGTGAAGTCTGTGCATATTCCTGCAAGCGCAAGTACGAGCTTCGCAAGCACATGCTCCTCAAGCACTCTCAGGGAGAGGGCCATCAGCCTCCAGTCTTCCAGTGCAAGTACTGTCCCTATCAGACATGCTACCGCCAGGCTCTGCACAACCACGAAAACTGCAAACATACCCGGACTCGAGAGTTCCGCTGTGCCCTCTGCCCCTACTCCACTTACAGCAGCACCGGCCTCTTCATCCACAAGAGGAAGGCTCATGGATACGTGCCTGGCGATAAGAAGTGGCAAGAGAActatgcagagaaagagagggagaactcTGTGGACCTACTGCAGGGCTTTTACAAAATGCCAGCCAAGAACTCTGCTGAAGGTCCTATCAAGAACCTACAGGAGAAAGTCGCTGGCTCTGCTGTTCAAAATGAACACAACCTAGAAACTGTAACTGGCCCCAAAACCACAGAAATGGCAAATAAAAATTCTGATATTGTCCAAGTGGTAGTTGACAAAGGGATTCTGGCATGTCACAATTCAACAGATAATCCAGAGCAATGCTGTACTTTAGTTTTGACAACAATAGCTAACACAGAGTGCACTGAGATGGCATCCATGCAGGGTGAGACGCCAAACAGCAGAGACCCAACTTACAGAAGACCCACAGTGGACCCTAAAGGATCTAACACCCTGAGCCAAAAGCCAGCTTCTGCAAGTGAGGCGGAGGAAGAGGACATGGCTATGGAGGATTGCGATGACCTAAACGAttcagaagagagagaaactcctTTAACCGCCACAAGGCAACCAGCAGAGGCTGCAGAGAACAACACACAGATAGCGGAGGTGTCTAGCGCAGCTTGCAACTCATCCGCCGAATCATTGGCGCAAAGCGCCGACTCTGAGATTCGTCTGAAGGCCATGAGGAAGCAAGACAAGGACCAGGCGGAGGCTCTGGTCTTGGAAGGCCGGGTTCAAATGCTGGTGGTGCAGAATGAGGCCGGAGAGGCTAGCATATACCGGTGCGAACACTGCTCCTACGTGACTCGCAAGCAGACCTCTCTCCGACACCACTGCCGTTCCCTCTGCCTCGCCAGGTGGAAGAGACTCAAGTGCCAAGCCTGTGGGGCGCAGTTCAAACAGAAGAGAGGCCTGGACACCCACCGCCTTAGGAAGTGTCCCGCTCTGCAGAAGAACACCAGGAGGTTCATTGGCACTCCCTCTGCTGGACAGTCTGGAGAAAGGGACTGGGGTCAGGGTAAATCCCAGATCCCTGATAAAACCACAACCGCCGATCAATCAGAGATAGTATCTTGTGATGTTGCGCCAACCGAAGTTTCCATAGACACACAAccagaaatgagaggagaggaagcaaACTTGTGCGATTTGAACAATCCTGGAGGCTCGGGTGAGAGAGGATCTACAGCACTACAGAAAAGCCAAAGGAAGACAGTTGGAGAGACAAAAAGGCAAGTGAAAGTTGGCAGGGTAAAGAGACCTGTGAAGATGAAAAAGATCAATGAGGGAGAAATCTTAGGAAAGACAGACAAAGCCCATCCTGTGAACACAGAGAATGACAATGCTCATAGCTATATAGAAGATGACTTGAAATTCACTTGCAAGACGTGCAGTTTCAGGTCCTCCAGGCTTGTGACGATAGAGCGCCACTGCTCGACGTGCACAAGAATAACTCCCACAAAGAAGGCTGTCCGAATTGTTAGCTCTCTGGAGCAGGATGATGACAGCAATGAGGAGGATGAGAATATTAAAAGGGGTTCTGAAGAAGATGTGGTTGAGATAAAGGTATCAAATCCAAGCTATTCTCCTAAATTGTCCTGTCCCAACTGTCTTTTCAGGTGCAAACAGAAGAGAGCACTGATCAACCACGAGAAGCGAGGCTGCCTGAAGCCAGACGAGGTGCAGTGCGAATTCTGCTCGTTTGTGGCCAAGTCACAGAAAGCTATGGCTAACCATGTACTGGTCCATCGGAAAGACAAGTTATCGCTCTTAAAAAAGGTCAAAAGGTCAGTTTTGCGTTGCAACCATTGCCCCTTTACTTGTAAGCAAGAGCGTTGCATGACCCAGCACGTGGCTCTGAAGCACGAAGGTGCCAAGCCCCACCGCTGCCGCTTCTGCCCGTTCAGCACCACACGGCGCTACCGCCTATATGCCCATGAATCTCTTCACACCGGCATGGGCCGCCACAGCTGCAACGTCTGCGACCAGACCTTTGGCGCTGCCTCCAAACTCCGCCAGCATCACAAGCGTGTCCACGACAAACAGCCCTCTCATTTCTGCACCCTGTGCGACTTCAGCAGCTACTCTCTCAACGATGTCGGACGACATACCCTCCGCTGCCACACAGGGAAGCTCCTGCACCCCTGCAGCCAATGTGAGGCACGCTTTAGCTCCGACACAGCGCTCAAGCAGCACTGCAGCCGCAAACACCTGAGCCCCGCCAGCGTAGCGTGCCAGCAATGTGACTTCAGCTGTGGCAGCCAGGCTACCCTCAAGGTCCACCAGCAGAAAAATCACCCTCAGCTGGACTGTGCCACCTGCCAGGAGACCTTCCCCACCCGGGAGGGCCTGGAGGAGCACCAGAGGACCCACCTCACCCAGCAGTGCCCGCTTTGCCCCTTTGCCACCCGTAAGAGGCAGCCACTCATCCAGCACCTTCTCGACGAGCATGAGGATGGCCCCCCAGAGGACAAGCCACTGAAGTGTGCCATCTGTGGCTTCGCCTGTCGCCACCAACTGGTCTTTGAGCAGCACGTTCGCTCCCACGGGGGTACCCGCCTTTACAAGTGCACAGACTGCCAGTACTCGACTCGCAACAAGCAGAAAATCACATGGCACATTCgcatacacacaggggagaagccctaCCATTGTGAGCAGTGCAGCTACTCCTGCGTAGATCCATCAAGGCTAAAGTATCACATGAGGATCCACCAGGAGGAGAAGAAGTACCTCTGTCCTGAGTGTGGCTACAAATGCAAGTGGATGAGCCAATTGAAGTATCACATGACCAAACATACAGGGGATAAGCCATATGCGTGCGAGGAGTGTGAGTACCGCACCAACCGTGGTGACGCCCTCCGCATCCACAGGGAGACGCAGCACTGCGACGCTCGCACCTTTATCTGCGAGAAGTGTGGCAAAGGCTTCAAGACGCGCTTCCTCCTTAAGACCCACCAGCGTAAACACAGCGAGGAGCGGCCTTACGTGTGCGGCCTGTGCCGCAGGGCCTTCCGTTGGCCAGCCGGCCTCCGCCACCATTACctcacccacaccaaccagcagCCTTTCATGTGCCGCTACTGCCCCTACCGTGCCAAGCAGAAGTTCCAGGTGGTCAAGCACCTGCGGGGGCACCACCCGGACCAGCCTGTGGAGCAAGGGGTGGCCAAGGATCCCCACGCCCTCAGCCTAACCCTGCAGGATGCCCGTCTGGGGGGGCTGGAGGAGGGGgctggggaggaggtggaggagggagctcgggaggaggggatggaggtgATTGTACCGGATGGGGTGGAGGTGTTGGTGCAAGAGAGGGTGGAGGTGTTGGTgcaagagagggtggaggaggtcaCAGAAGGCCAGCAAGGTGAGGAGTAAAAAGGTTCAGCCCACTCAACTGGAACCTGAGAAAACAGACATTTTAGTGAACGTTTTGATGCAGTTTTCCTCATCCAAGCATGATGAGGACTGGGCTACAGCGGTAAACTTGAATTAAACATCAACAAAGGACCTTGTCTTAATGAGTATGCATGTACATATACTACTGCAGAGTGCACCGTGAAACAAATATACAATTGTATGTTTAGTATTAAAACATTGTCAATTAATGGCGTATAAACAAATTGCTAACTGACAATTACAAGAAATGGGCAGTTTAAAAATGTTTAACCAATAGGAATATAACTTTTTATATTAAGATGTTTTCAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044431 lncRNA downstream 165030 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 169428 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 335924 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 364175 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 371384 19284031 ~ 19284379 (-) True G1785745
TU2044997 lncRNA upstream 20289 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 21564 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 308119 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 322667 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 416185 20082386 ~ 20082662 (-) True G1786646
XM_036958934.1 mRNA downstream 52205 19572445 ~ 19603558 (-) True LOC110501567
XM_036958933.1 mRNA downstream 85133 19544358 ~ 19570630 (-) True LOC110501564
XM_021579226.2 mRNA downstream 85213 19544358 ~ 19570550 (-) False LOC110501564
XM_036958932.1 mRNA downstream 85217 19544358 ~ 19570546 (-) False LOC110501564
XM_021579225.2 mRNA downstream 85250 19544358 ~ 19570513 (-) False LOC110501564
XM_021579240.2 mRNA upstream 77519 19743720 ~ 19761865 (-) False vil1
XM_021579239.2 mRNA upstream 77519 19743720 ~ 19763860 (-) True vil1
XM_036958942.1 mRNA upstream 103207 19769408 ~ 19787506 (-) False LOC110501577
XM_036958940.1 mRNA upstream 103207 19769408 ~ 19787524 (-) False LOC110501577
XM_036958941.1 mRNA upstream 103207 19769408 ~ 19787525 (-) True LOC110501577
TU2044318 other downstream 333904 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 476579 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 478023 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1751812 17869529 ~ 17903951 (-) False G1783895
TU2045476 other upstream 679498 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 724315 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2124555 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2751929 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3498280 23164481 ~ 23169363 (-) True G1790280

Expression Profile