RNA id: TU2044972


Basic Information

Item Value
RNA id TU2044972
length 2489
RNA type TUCP
GC content 0.55
exon number 3
gene id znf142
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19655763 ~ 19666201 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTCTGGTCTTGGAAGGCCGGGTTCAAATGCTGGTGGTGCAGAATGAGGCCGGAGAGGCTAGCATATACCGGTGCGAACACTGCTCCTACGTGACTCGCAAGCAGACCTCTCTCCGACACCACTGCCGTTCCCTCTGCCTCGCCAGGTGGAAGAGACTCAAGTGCCAAGCCTGTGGGGCGCAGTTCAAACAGAAGAGAGGCCTGGACACCCACCGCCTTAGGAAGTGTCCCGCTCTGCAGAAGAACACCAGGAGGTTCATTGGCACTCCCTCTGCTGGACAGTCTGGAGAAAGGGACTGGGGTCAGGGTAAATCCCAGATCCCTGATAAAACCACAACCGCCGATCAATCAGAGATAGTATCTTGTGATGTTGCGCCAACCGAAGTTTCCATAGACACACAAccagaaatgagaggagaggaagcaaACTTGTGCGATTTGAACAATCCTGGAGGCTCGGGTGAGAGAGGATCTACAGCACTACAGAAAAGCCAAAGGAAGACAGTTGGAGAGACAAAAAGGCAAGTGAAAGTTGGCAGGGTAAAGAGACCTGTGAAGATGAAAAAGATCAATGAGGGAGAAATCTTAGGAAAGACAGACAAAGCCCATCCTGTGAACACAGAGAATGACAATGCTCATAGCTATATAGAAGATGACTTGAAATTCACTTGCAAGACGTGCAGTTTCAGGTCCTCCAGGCTTGTGACGATAGAGCGCCACTGCTCGACGTGCACAAGAATAACTCCCACAAAGAAGGCTGTCCGAATTGTTAGCTCTCTGGAGCAGGATGATGACAGCAATGAGGAGGATGAGAATATTAAAAGGGGTTCTGAAGAAGATGTGGTTGAGATAAAGGTATCAAATCCAAGCTATTCTCCTAAATTGTCCTGTCCCAACTGTCTTTTCAGGTGCAAACAGAAGAGAGCACTGATCAACCACGAGAAGCGAGGCTGCCTGAAGCCAGACGAGGTGCAGTGCGAATTCTGCTCGTTTGTGGCCAAGTCACAGAAAGCTATGGCTAACCATGTACTGGTCCATCGGAAAGACAAGTTATCGCTCTTAAAAAAGGTCAAAAGGTCAGTTTTGCGTTGCAACCATTGCCCCTTTACTTGTAAGCAAGAGCGTTGCATGACCCAGCACGTGGCTCTGAAGCACGAAGGTGCCAAGCCCCACCGCTGCCGCTTCTGCCCGTTCAGCACCACACGGCGCTACCGCCTATATGCCCATGAATCTCTTCACACCGGCATGGGCCGCCACAGCTGCAACGTCTGCGACCAGACCTTTGGCGCTGCCTCCAAACTCCGCCAGCATCACAAGCGTGTCCACGACAAACAGCCCTCTCATTTCTGCACCCTGTGCGACTTCAGCAGCTACTCTCTCAACGATGTCGGACGACATACCCTCCGCTGCCACACAGGGAAGCTCCTGCACCCCTGCAGCCAATGTGAGGCACGCTTTAGCTCCGACACAGCGCTCAAGCAGCACTGCAGCCGCAAACACCTGAGCCCCGCCAGCGTAGCGTGCCAGCAATGTGACTTCAGCTGTGGCAGCCAGGCTACCCTCAAGGTCCACCAGCAGAAAAATCACCCTCAGCTGGACTGTGCCACCTGCCAGGAGACCTTCCCCACCCGGGAGGGCCTGGAGGAGCACCAGAGGACCCACCTCACCCAGCAGTGCCCGCTTTGCCCCTTTGCCACCCGTAAGAGGCAGCCACTCATCCAGCACCTTCTCGACGAGCATGAGGATGGCCCCCCAGAGGACAAGCCACTGAAGTGTGCCATCTGTGGCTTCGCCTGTCGCCACCAACTGGTCTTTGAGCAGCACGTTCGCTCCCACGGGGGTACCCGCCTTTACAAGTGCACAGACTGCCAGTACTCGACTCGCAACAAGCAGAAAATCACATGGCACATTCgcatacacacaggggagaagccctaCCATTGTGAGCAGTGCAGCTACTCCTGCGTAGATCCATCAAGGCTAAAGTATCACATGAGGATCCACCAGGAGGAGAAGAAGTACCTCTGTCCTGAGTGTGGCTACAAATGCAAGTGGATGAGCCAATTGAAGTATCACATGACCAAACATACAGGGGATAAGCCATATGCGTGCGAGGAGTGTGAGTACCGCACCAACCGTGGTGACGCCCTCCGCATCCACAGGGAGACGCAGCACTGCGACGCTCGCACCTTTATCTGCGAGAAGTGTGGCAAAGGCTTCAAGACGCGCTTCCTCCTTAAGACCCACCAGCGTAAACACAGCGAGGAGCGGCCTTACGTGTGCGGCCTGTGCCGCAGGGCCTTCCGTTGGCCAGCCGGCCTCCGCCACCATTACctcacccacaccaaccagcagCCTTTCATGTGCCGCTACTGCCCCTACCGTGCCAAGCAGAAGTTCCAGGTGGTCAAGCACCTGCGGGGGCACCACCCGGACCAGCCTGTGGAGCAAGGGGTGGCCAAGGATCCCCACGCCCTCAGCCTAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044431 lncRNA downstream 165549 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 169947 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 336443 19319492 ~ 19319839 (-) True G1785752
TU2044313 lncRNA downstream 364694 19291367 ~ 19291588 (-) True G1785748
TU2044310 lncRNA downstream 371903 19284031 ~ 19284379 (-) True G1785745
TU2044997 lncRNA upstream 27390 19686490 ~ 19687169 (-) True G1786379
TU2044998 lncRNA upstream 28665 19687765 ~ 19688406 (-) True G1786380
TU2045193 lncRNA upstream 315220 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 329768 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 423286 20082386 ~ 20082662 (-) True G1786646
XM_036958934.1 mRNA downstream 52724 19572445 ~ 19603558 (-) True LOC110501567
XM_036958933.1 mRNA downstream 85652 19544358 ~ 19570630 (-) True LOC110501564
XM_021579226.2 mRNA downstream 85732 19544358 ~ 19570550 (-) False LOC110501564
XM_036958932.1 mRNA downstream 85736 19544358 ~ 19570546 (-) False LOC110501564
XM_021579225.2 mRNA downstream 85769 19544358 ~ 19570513 (-) False LOC110501564
XM_021579240.2 mRNA upstream 84620 19743720 ~ 19761865 (-) False vil1
XM_021579239.2 mRNA upstream 84620 19743720 ~ 19763860 (-) True vil1
XM_036958942.1 mRNA upstream 110308 19769408 ~ 19787506 (-) False LOC110501577
XM_036958940.1 mRNA upstream 110308 19769408 ~ 19787524 (-) False LOC110501577
XM_036958941.1 mRNA upstream 110308 19769408 ~ 19787525 (-) True LOC110501577
TU2044318 other downstream 334423 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 477098 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 478542 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1752331 17869529 ~ 17903951 (-) False G1783895
TU2042338 other downstream 1752331 17870128 ~ 17903951 (-) True G1783895
TU2045476 other upstream 686599 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 731416 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2131656 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2759030 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3505381 23164481 ~ 23169363 (-) True G1790280

Expression Profile