RNA id: XM_021579235.2


Basic Information

Item Value
RNA id XM_021579235.2
length 3152
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110501572
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19679303 ~ 19686002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGGAAGTACCTTTTTAGTGTTGCTGACGAGACGCTGATGAACCAAACCACAGCATCGCGACAGCACTGTGGAAATTATATGCCAAATCTGTAGTGTAACAAGGCCAAGGGTGCCATGGTTCTAGGAATGAAACTGGAAAGGGAAGACTGTGAGGACACCTCTTTGGGATGCTCATAACGTCGAGGTGTTGTATAGCTTCTGAGTAGCCTAGCTACATAGCTAGGAAACACAAGGACCATGCCTCTATCAGACTTCGTGGATGCCTTGAAGGACAACCCTTACTTTGGGGCTGGCTTTGGACTGGTGGGGGTGGGCTCGGCCATTGCTGTGGCCAGGAAATCAGCTCAATTTGGGATGATCTTCTTCCGGAGGAACTACATGATCACCCTGGAGGTGCCCAGTCGGGACAAGAGCTACCACTGGCTGCTGAGCTGGATCACCAAGCACGCCAAGCACACGCAGCACCTGAGTGTGGAGACCTCTTACATGCAGCACGAGAGTGGACGGGTACACACACAGTTTGACTTCCACCCCAGCCCTGGCAACCACATAATCTGGTATGGGAGGAAGTGGATCCGAgtggagaggaccagagagaaaCAGATGGTGGATCTCCACACAGGCACTCCCTGGGAGTCAGTCACGTTCACCGCCATGGGCAGAAACAGAGACGTCTTCTTCAACATCCTGCAAGAAGCCAGGGAGTTGGCCCTGAAGCAGGAGGAGGGTCGGACGGTGATGTACACGGCCCTGGGCTCCGAGTGGAGGCCCTTTGGGTTCCCACGGCGACGACGGCCCCTCAGCTCAGTGGTCCTGGAAGAGGGCTTGGCCGATAGGATTGTAGATGATGTGAAGGAGTTCATCGGAAACCCCAAGTGGTACACAGACCGAGGGATCCCCTACAGGAGAGGTTATCTGCTGTATGGACCTCCAGGCTGTGGGAAAAGCAGCTTCATcaCTGCGCTGGCTGGAGAGCTGGGCTACAGCATCTGCCTGATGAGTCTGAGCGACCGCAGCCTGTCTGACGACCGCCTCAACCACCTGCTGAGCGTGGCGCCGCAGCAGAGTATCATCCTGCTGGAGGACGTGGACGCCGCCTTCGTCAGCCGAGAGCTGCTGCCCACCGaaagCCCTCTGGCCTACCAGGGCATGGGCAGGCTGACCTTCAGTGGCCTCCTCAATGCTCTGGATGGAGTGGCCTCGTCAGAGGCCAGAATAGTCTTCATGACCACCAACTTCATAGACAGGTTGGACCCAGCTCTGATCAGGCCGGGCCGTGTGGACTTGAAACAATATGTGGGCCACTGCACCCACTGGCAGCTCACCCAGATGTTCCGACGCTTCTACCCAGCTGAGTCGGCCACAGAGGGGGACCGCTTTGCGGAGAGTGCGCTGGCCACCCACCCCAACATCAGTGCTGCCCAGGTGCAGGGGCACTTCATGCTGTTCAAAATAGACCCAACGGGCTCCATAGACAACGTGGCCAAGATGAAGGAGTGAGGAGACTTAAAGGACTCTGGGAAGGAAGGTCACAGAAGAAGTCGTCATTTGACACGAAATGAGAAGTTAAAGAGACTCTGTTTGAGACGGAAAATGCTGTAACTTCTCAAACTTTTTATGTGCTTTTTTCATTGCCAAGTCACATACTGAATAAAAGTGAGTGAGTAAATGATTTTAAATAAAATCAAAGGCACGTGAGTAAGTTGGTACTATTGACGTGGTATTTACAGTATATAGAGATTCAAAGTAAAAGGGTTGTGGCATGTATTACACTCTCCGAATTCTAAGAATTTTGATAATTCAAGGGAAATTCTGTCTGAGAAGCCATCCAGTTCACAGAACCACACTTCTATAACAAGTCTCAACTCCCTCCTACCGGGACACGCTGCTGTGCAAATCAAACACATTTCTCAAATCCACTCTGCATTTGATTGCAGATTGGCATAAGTCTACCTTCACCTAGGTAGCCTTTCTCATAGGTTGATTTGAGAAGTCTCTGTCACAATCTGTGTTTGGCAACTGCTTAAGTATTGACGTCCCTAGCTTATACAATGTTATTGATTTGAGGTTGGTTGGTACCTGTATTACTGAGTTTTGAGATTGGGAGAAAACTAAGTACTGCAATATTACAATATAATTACTGTAGAAACTAATCCAGTAATCATATAATGCAATATTGTACTAACAGTCATTGCTCGTAACTGACAAACTCTGAACAGGTCCAAGATGTAAAGTTATGCCCCTCTACTTCCTCTTTGTAAGAGTAAGCTCCACAGAAAGATACGTTGAGTAGAGATCAAATGTTAATACGTGTGAcgtttttttctgtattttttgctCTGTCTTATGCAACCTAGCTTACTTTATTTAGGAAGTGGAGGAggtctactatatatatatatatgtatatatatacagcagtttACATAGGTGTCACACTGTTTGGACAGAATGGAGATAGGGTCGCTTCTGTAAGTGTATGTGTCAATCATTTGGGTTTATCACTATTGTATTTTCTCCTTGATTTACAACATAATTGTATACTTTGGGAGTTTTATTTTAGATGAGTGGTTGTGTCATTTAATGACATTTCTTTGTGTTTTAGTACTAATTACTCTACATTCACCTACTCTGGATACAGTCAAGATgaaggatcccccccccccccagcaattACCCAGCGGGCTAAGCTGGTTGCCCAATGGGATGTTCTGTAGTAAAGTCAGATTCTCCATCCCTTCATATCTCCAGCTTATGgggcggggcggcaggtagcctagcggttagagagtgTGCCATCAACCGGAgggttgctagtttgaatcctGGTTCCGATGGGGTACTGATCGTGGCCGTTGATCTACTGCCGCTGCTTATCTGCCTACTAAAAATGGTCAGTCCGCATGGTCAGTCCGCTTGTTTCTTCTCACTTCAAGCTCGGATCTAATGTACTCTATGAATCATGTAAAGCTATGACTATGATGTAAATGTTAATTTTTTTTCTCAATTAGCCTCCCATGTAATCAATTATCACATTTAATTATTTAATAGATTAGTAATATTCTAAGGCAGGGGTGGGCAAATCTGATCCtggagtttttttccccccagatCAGCTATAACACGACTGATTAAACATGATTGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044538 lncRNA upstream 5469 19673600 ~ 19673834 (+) True G1785961
TU2044530 lncRNA upstream 13134 19665910 ~ 19666169 (+) True G1785953
TU2044529 lncRNA upstream 13643 19665448 ~ 19665660 (+) True G1785952
TU2044528 lncRNA upstream 14085 19665000 ~ 19665218 (+) True G1785951
TU2044522 lncRNA upstream 16281 19662205 ~ 19663022 (+) True G1785945
TU2044588 lncRNA downstream 79888 19765638 ~ 19765914 (+) True G1786002
TU2044592 lncRNA downstream 82279 19768029 ~ 19768416 (+) True G1786006
TU2044593 lncRNA downstream 82723 19768473 ~ 19768832 (+) True G1786007
TU2044765 lncRNA downstream 310930 19996680 ~ 19997210 (+) True G1786167
TU2044884 lncRNA downstream 498149 20183899 ~ 20184166 (+) True G1786280
XM_036958938.1 mRNA upstream 23545 19630160 ~ 19655758 (+) True plcd4b
XM_021579232.2 mRNA upstream 51349 19603742 ~ 19627954 (+) False LOC110501568
XM_036958936.1 mRNA upstream 51349 19604401 ~ 19627954 (+) False LOC110501568
XM_021579228.2 mRNA upstream 106357 19570604 ~ 19572946 (+) False ybey
XM_021579229.2 mRNA upstream 106371 19570662 ~ 19572932 (+) False ybey
XM_021579237.2 mRNA downstream 3266 19689016 ~ 19726868 (+) False LOC110501573
XM_021579238.2 mRNA downstream 3413 19689163 ~ 19726868 (+) True LOC110501573
XM_021579241.2 mRNA downstream 48537 19734287 ~ 19743949 (+) False zgc:66484
XM_021579243.2 mRNA downstream 53081 19738831 ~ 19743949 (+) False zgc:66484
XM_036958939.1 mRNA downstream 53224 19738974 ~ 19743949 (+) False zgc:66484
TU2044524 other upstream 17377 19661109 ~ 19661926 (+) True G1785947
TU2044159 other upstream 51543 19616995 ~ 19627760 (+) True LOC110501568
TU2044113 other upstream 106864 19570580 ~ 19572439 (+) False ybey
TU2043879 other upstream 481589 19186488 ~ 19197714 (+) True LOC110501548
TU2042946 other upstream 912163 18766319 ~ 18767140 (+) False G1784476
TU2044933 other downstream 595263 20281013 ~ 20281854 (+) False asb1
TU2044940 other downstream 597431 20283181 ~ 20284571 (+) True G1786330
TU2046423 other downstream 1448515 21134265 ~ 21136477 (+) True G1787719
TU2047590 other downstream 2309614 21995364 ~ 21996093 (+) True G1788811
TU2047594 other downstream 2312723 21998473 ~ 21999623 (+) True G1788815

Expression Profile