RNA id: XM_021579240.2


Basic Information

Item Value
RNA id XM_021579240.2
length 3546
RNA type mRNA
GC content 0.49
exon number 20
gene id vil1
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19743720 ~ 19763860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACAAAGTTCAGGTGCTATAAACGGGTTGGTGAGATGGGCAGGTAGTGACacatctcaccctctcctctcctctccactccactcctggTCCCTTCACATCCGGTATCTTCTCCAAGCTGAATCTGGCACCATGCCACAGATCGAGGTCAAAACCCAAGTTGCAAAAGTCCTCAATAAAACCACGCCAGGGCTGCAGATATGGAGGATAGAGGCCTTGGAGATGGTGCCTTTCCCTTCTAAAGCATATGGAAATTTCTATGAAGGAGACAGCTATATCATTCTATACACCAATAAGATGAACAGCTCATTCACCTACGACATCCACTTTTGGCTCGGAAAGGACACCTCCAACGACGAGCAGGGGGCGGCGGCCATCTACACCACCATGATGGACGAGCACCTGGGGGGTGTGGCTGTGCAGCACCGCGAGGCGCAGGGCTATGAGAGCGACACCTTCCGTGGATACTTCAAACAGGGCATCATCTACAAGAAGGGCGGCGTGGCATCTGGGATGAAGCAGGTGGAGACCAACACCTACAACATCCGTCGCCTGCTCCATGTCAAGGGAAAAAAGCATGTGGTGGCTGGAGAGGTGGACATGAGCTGGAGCAGCTTCAACAAGGGGGATGTGTTCCTGCTGGACCTGGGCAACCTCATCATCCAGTGGAATGGACCCAAGAGCAACCGCATGGAAAAACTCAAGGGGATGACTCTAGCCAAAGACATccgtgacagggagagagggggacgggCACAGGTGAGCGTGGTGGAAGGGGACGACGAGAAGTCTTCAGAGGAGGCCATGAAGCTGATGAAACAGCACctaggagagacaagacgggaCATCAGGGACTGCATCGCACCTGACGACATCGTCGACCAAAAGCTGAAGTCCAGCGTGAAGCTCTTTCATATCTCAGATGCCCAGGGGAACCTTGTGGTGCAGGAAGTGGCAGTGAAGCCTCTGACTCAGGACCTGTTGAATCACGAGGACTGCTTTCTGTTGGATCAAGGTGGTACACGAATCTTTATCTGGAAAGGAAAAAAGGCTTCCAAGACAGAGCGGTCTGAGTCTTTGGATAAAGCAGAAGCATACAAGAAGGCGAAGGGCTACCCTATCTCCACCTACATCGAGATGGTGAATGATGGTGCTGAGTCTGCCGTATTCAAGCAGCTTTTCCAGAGGTGGACCGTGAAGGGTCAGACTGTGGGGATGGGCACCACAAGCAGCACAGGGAAAATTGCCAAGGTTGAGCAGATCAAGTTTGATGCAACTTCCATGCATGCAAGGCCTGACCTGGCTGCCCAGCAGAAAATGGTGGACGACGGAACAGGCGAAGCAGAGGTGTGGAGGTTAGAGGACAGTGAGCTGGTGCCTGTGGACAGGAAGTGGTTGGGCCACTTCTATGGAGGCGACTGCTATCTCATCCTCTACAAATATGAAGTCAGCAACAGGAGTCACTACATGCTATACATGTGGCAGGGTCGTCATGCGACCACGGGAGAGCTAGCTGCCTCTGCTTTCCAAGCCGTGAACATCGACCGGCAGTACAACGGGGAGCCAGTTCAGGTCCGAGTGCCCATGGGGAAAGAACCACTCCACCTCATGGCCATATTCAAGGGCAAGATGGTGGTCTATGAGGAGGGGAGCTCCAGAGTCAACTCTAAACATGTCCAGCCGGCAGTTCGTCTCTTCCACATCCACGGCACCAACGAGTTCAACACCCGCGCCATTGAAGTGCCGGCACGCTCTTCGTCCCTCAACTCCAACGATGTCTTTGTGCTCAGCACTGACACTTGCTGCTATCTGTGGTACGGAAAGGGCTGCAGTGGCGATGAGCGAGAGATGGGCAAATCCCTGGCAGACATCATCTCCAGGAGGGAAAAACAGGTCATTGCAGAGGGCCAGGAGCCGGCTCACTTCTGGGTCAATCTCGGAGGCAAGTCCCAGTATGCCGACAGCAAGAGGCTTCAGGAAGAGCACACAAATATCACCCCACGTCTCTTCGAGTGCTCCAATCAGACAGGCCGCTTCCTGGCCACGGAGATCACCAACTTCAACCAGGACGACCTGGACGAAGATGACATCATGTTGCTGGACATATGGGACATGGTGTTCCTGTGGATCGGCAAGGGAGCCAATCAAATAGAGAAGGACAACGTGGTCCCCACGGCACAAGAATACCTGAAGTCCCACCCAGGGGGTCGGGATGTAGACACCCCCATCGTGATGATCAAACAGGGCTTTGAGCCTCCCACCTTCACTGGCTGGTTCCACGCCTGGGACCCACACATGTGGAGTGGAGGGAAGTCCTACCAAGAATTGAAGGCTGAGCTTGGAGATGCCACTGACATCATCCAGATCACGGTGGAGAGGACCACATCCAATTCCACTCAGAATAACTCCAAGAACACTGGAATACCACTGTTGCAACCTACCGTTCAGGCCACCTTCCCTGCAGACAAGCTGTTGAACTGCCAGACAGAGGACCTGCCCGAAGGGGTTGACCCCACCAAGAAAGAGGAGCATCTTTCCAATGATGACTTTGCTCTGATCCTGGGTGTGTCCAGGGCAGAGTTCTACTCCATGCCCAACTGGAAGCAGCAGAATATGAAGAAAGAGAAGGGTCTATTCTAGGAGTATATCTACACCGTGGGCCTCATTTTGACAGTGTGTAATACTGTCAAATCTTCTCAAACTCTATTTCAAAAGAAGTTTGGAATGCAAGCGGTCGAAATTCTGCATCTTGAATCTGCACTGTTATTTGTGCATCTTAGACCTGCAGAAATATTACTCTAGCGTGGACATGACTTTTTAAATGATCCCCACTAAAACAAAAGTATATGGAGTATTTCAGACATGGTTGACACTTTTTCGCGCTTTCAAAATGAGGCCCCTCGTGTTTTGTCATCTAGCCTTGCACTTctactcttagccaagagagtgTGTGAATGAGTGGGCCGTTCTCAAATAACTGTAAACAACATATTAAAGCGCCTTTAGGTTTAGTCTTGCAAATAATCTATGATTTGTTTTCTTGCTTCTGAAATGTCGCTGTTAAAATGTAGGCAATCGAGTTATGAAGATGACATTTGTAGTTGATAGAAAGGATTCTACACATTCTATTATTGGAGATTTAGCATAGGCTTCATTTGCAGCACTTTCCCCCTGAATTGCTACTTGTGTCACAGAATTATATCTGGATATGTAATGTGCCTGTCAGGCATTTCAAAATAAGTAGAATGTGATGTTGGTTCTATACTTTATGTCCACAATTAGCCTTAATATTGAAAACATATCTGCAACAATATATTTGCAATCTTCAGAGGACCACAAGGGCTTAGTTTATTAGTAGGTACTTTGTGTTTCATAATATACATGTTGAGGTGTAACATATCAATGAAATTATGACTGTCAAATGGAGATGTCTATTGGGGTATTTCGTTTTTTGCTATGTTGGATAAGCAGATGAATACATCTCTATGAAGATCCTTCATTTGCAATGCTACAATGACAGTCAATAAAGAAGACCCTATTCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044998 lncRNA downstream 55314 19687765 ~ 19688406 (-) True G1786380
TU2044997 lncRNA downstream 56551 19686490 ~ 19687169 (-) True G1786379
TU2044431 lncRNA downstream 252987 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 257385 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 423881 19319492 ~ 19319839 (-) True G1785752
TU2045193 lncRNA upstream 212455 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 227003 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 320521 20082386 ~ 20082662 (-) True G1786646
TU2045283 lncRNA upstream 328816 20090681 ~ 20091112 (-) True G1786654
TU2045341 lncRNA upstream 393598 20155463 ~ 20183323 (-) True G1786709
XM_021579233.2 mRNA downstream 77519 19655763 ~ 19666201 (-) False znf142
XM_036958937.1 mRNA downstream 77519 19655763 ~ 19666201 (-) False znf142
XM_036958934.1 mRNA downstream 140162 19572445 ~ 19603558 (-) True LOC110501567
XM_036958933.1 mRNA downstream 173090 19544358 ~ 19570630 (-) True LOC110501564
XM_021579226.2 mRNA downstream 173170 19544358 ~ 19570550 (-) False LOC110501564
XM_036958942.1 mRNA upstream 7543 19769408 ~ 19787506 (-) False LOC110501577
XM_036958940.1 mRNA upstream 7543 19769408 ~ 19787524 (-) False LOC110501577
XM_036958941.1 mRNA upstream 7543 19769408 ~ 19787525 (-) True LOC110501577
XR_005038965.1 mRNA upstream 26929 19788794 ~ 19789923 (-) True LOC118943631
XM_021579249.2 mRNA upstream 433847 20195712 ~ 20202996 (-) False agr1
TU2044972 other downstream 84620 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 421861 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 564536 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 565980 19175567 ~ 19177740 (-) False LOC110501547
TU2042341 other downstream 1839769 17869529 ~ 17903951 (-) False G1783895
TU2045476 other upstream 583834 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 628651 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2028891 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2656265 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3402616 23164481 ~ 23169363 (-) True G1790280

Expression Profile