RNA id: XM_036958940.1


Basic Information

Item Value
RNA id XM_036958940.1
length 3329
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110501577
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19769408 ~ 19787525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAAAATAACTGTGATGTTCATCTCAAGCAGTCAGTCAACCACATAGAGAGCACACCAATGACAGTGAGTTGAGGGTTACATAGGAGCTGCAGCACAATGACTCTTGAAATGTAtccgtgtgtgtctctcctgCTCCTGCTGATGGGCAGAGGTGccatTCCCCTAGTGCTCTCCCAGGAGGGGAAAGTATGTTCCAAAACAGTGATCAACTCCTGCAGTGACTGCATCAAATCAGGAGCGTACTGCACGTGGTGCAAACAACTGAACTTCATCAAACCAGGTGAGCAGGAAGCAGCTCGCTGTGACACCTGGGCTCAGCTCATAGAAAGGGGCTGCATGGAAGAAGACATCATATCTCCCAAGAATGACTTTTCTTCTTCTAAGAACATCTCCCTGTCCAACACTGCATTGGACAAGGGGGAACCCATCCAGCTCCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGACTGCCTCATACATTCACGCTGGACTTTCAGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGATGATTTGAGGAGCATCAAGACTCTGGGAAACGAACTGTTTAACGCTCTGCAAGGCATCACAAAAAAAGGACGAATCGGTTTTGGCTCTTTTGTAGACAAGACTGTCCTGCCATTCACTAACACCAACCCAGAGAAGCTGAATAAGCCATGCGCCGAAACAGAGATGTACTGCCAACCTGCTTTTGGCTACAGACATGTTCTTAGCATGACGGAAAAAAAAGCTGAGTTTGAGAGCAAGGTCAACAAGCAGCGGATCTCTGGGAACTTAGACTCCCCCGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTCTGTGGGGAAAGGATTGGCTGGAGGAATAGCAGCACTCGGCTTATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAATGATGAGAGATGTTACATGGACAATAACCTGTACAGCAAGAGCAATGAAATGGACTACCCATCTGTTGGTCAAGTGGCTAATCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACGAAGAACATGGAGAAGGTATACAGGGAACTCAGTAAAATGATCCCCAAGTCTGAGGTGGGAGTGTTGTCCGCTGACTCCCATAATGTCGTTGAACTGATAAAAAATGCCTACAACAGGCTCTCCTCCAAAGTGACGGTGACTCATGATGCTCTCCCTGACAACGTGAGAGTCACTTACACTCCACTCTGTCCTGAAGGGGGACCCTCAGGGGACAAAGGAGTGTGTAACAATGTGGGAGTGGGACAGATGGTGTctttcaatgtaacagtgacagcgGATGAATGTATGCAGAGTGAAATTTCTTTCCTGATTGGTCCGTTGGGAATGAAGGACAAGCTGAAGGTGAGCTTGTCGACTCTCTGCAAGTGTGAGTGTGAAAACCCTGTGACGGTCGATTCCCAGTACTGCAACGGGAAGGGCCAAGTCAACTGTGGCATGTGCAGTTGCAAAGCCGGCTTCGTGGGCCAGAAGTGTGAGTGCTCCATCGGGGAGAAGGACGAGAGCTCTCTGAGAGCGGCGTGCCGGAAGGACAACGGCACGGAGTGTGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTACACCTTACCAGGCGGCAGCACCTACTACGGCACGAATTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTCCAGAACAAACTGTGTGGAGGGAACGGAAAATGCCGTTGCAAAAATTGCGAATGCAAACCCGGGTACGAGGGCACCGCCTGCCAATGCAAGAAGTCGGACGAGCAGTGTCGCACACCAAGCGGGAGTGTGTGCAGCGGCAGGGGCACGTGCAAGTGTAACCAGTGCAAGTGTATGGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAAACCACCTGTATAACCAAGGGGAAATGCATTGAGTGTCTGGGCTTTCAGACAGGCCCATTCAGTAAGAACTGCTCCCAGGCCTGTACGAGTATTAGTGAATTCAAGATGGTGGAGACGTTGCCACCTGGTAAGCCTTGTGATGTGAGGGATGTGGAGAGCTGCCGGGTGTTCTTTGCCATTAAACAGTTGGACGGAGAGGACAACTACACCGCCCAAATACTAAAGACCAGAGAGTGTCCCAAGTTGCCAAACATCTATGCCATCATTGGAGGCTCCATCGTAGGCGTGACTGTCATCGGAATCCTGATCCTGCTCTTCATCAAAGTCCTCTTCACATTGCAAGACCTGAAGGAGTACCGCAAGTTTATGAATGAGGCGCAGAAAACCAGGTGGTCAGAGAATAAGAATCCAATATTCCAGGAGGCAACCACCACCGTGGCTAACCCTACCTTCAGTGGAGAATAACTTCAGAGAAGTCAGTCAAGACATTCGGTTGGATGCAAATGCATACAtttattgtttctgttttaatGTGCATTTATGTAGATTAGTTCATTTAATTTATACATTGGTCTGTCTTTTTGTGTGTCCCGAGTCTGAACATTTAGAGAATGACTCGAAACTTGTACTGCTGGAGTGTTGCTACATGATCTTATGTCTAGTTGGAGTCAATTCCATTTTAGCTCGATTAAATGCAGGAATTTGTTTAGAAAAGCACTGAATAGTTTTGTGCAAGCCTGGTTTTATTTTGTTTGGGATTATAAACTGTTGTGTAAAAAGTTGGACACATTGTTCAACTTCATGAAACctattaaaggcccaatgcagtcaGCGTGATTCTCCAGTGTTTTATATACATtcccacactgaggttggaataatactgtgaaattgtaaaaataatgataatgcccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttggtgggatggagttttggtgcCTGGTGACATCGCTAGGCGGCAAATTAGttgatagaccaataagaaatagtaacaaacctctctgccaataacagctagttttcagtattaccactcccagacagtcctcgctaaattattgcttgagaaatttctCATTGCTAAGATTTTTTTTGGTACAATTTAAAATAAAACAATCACATGTtactcagaaatgatttgatatcgaGATAAAATGGcagcattggacctttaagcaATTATTTTTGTAGCTTTTATGTAGTTATCTGCAATGTACCATGACTGTACATCATCATGAGTAAATATTGTATAAAGAAGCAAGTGAATTATGAAATAAAACTCTCTTGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044998 lncRNA downstream 81002 19687765 ~ 19688406 (-) True G1786380
TU2044997 lncRNA downstream 82239 19686490 ~ 19687169 (-) True G1786379
TU2044431 lncRNA downstream 278675 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 283073 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 449569 19319492 ~ 19319839 (-) True G1785752
TU2045193 lncRNA upstream 186796 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 201344 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 294862 20082386 ~ 20082662 (-) True G1786646
TU2045283 lncRNA upstream 303157 20090681 ~ 20091112 (-) True G1786654
TU2045341 lncRNA upstream 367939 20155463 ~ 20183323 (-) True G1786709
XM_021579239.2 mRNA downstream 5548 19743720 ~ 19763860 (-) True vil1
XM_021579240.2 mRNA downstream 7543 19743720 ~ 19761865 (-) False vil1
XM_021579233.2 mRNA downstream 103207 19655763 ~ 19666201 (-) False znf142
XM_036958937.1 mRNA downstream 103207 19655763 ~ 19666201 (-) False znf142
XM_036958934.1 mRNA downstream 165850 19572445 ~ 19603558 (-) True LOC110501567
XR_005038965.1 mRNA upstream 1270 19788794 ~ 19789923 (-) True LOC118943631
XM_021579249.2 mRNA upstream 408188 20195712 ~ 20202996 (-) False agr1
XM_021579248.2 mRNA upstream 408188 20195712 ~ 20203864 (-) True agr1
XM_036958953.1 mRNA upstream 591941 20379465 ~ 20502301 (-) False hdac4
XM_036958949.1 mRNA upstream 591941 20379465 ~ 20551605 (-) False hdac4
TU2044972 other downstream 110308 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 447549 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 590224 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 591668 19175567 ~ 19177740 (-) False LOC110501547
TU2042338 other downstream 1865457 17870128 ~ 17903951 (-) True G1783895
TU2045476 other upstream 558175 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 602992 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2003232 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2630606 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3376957 23164481 ~ 23169363 (-) True G1790280

Expression Profile