RNA id: XM_036958941.1


Basic Information

Item Value
RNA id XM_036958941.1
length 3327
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110501577
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19769408 ~ 19787525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAAAATAACTGTGATGTTCATCTCAAGCAGTCAGTCAACCACATAGAGAGCACACCAATGACAGTGAGTTGAGGGTTACATAGGAGCTGCAGCACAATGACTCTTGAAATGTAtccgtgtgtgtctctcctgCTCCTGCTGATGGGCAGAGccatTCCCCTAGTGCTCTCCCAGGAGGGGAAAGTATGTTCCAAAACAGTGATCAACTCCTGCAGTGACTGCATCAAATCAGGAGCGTACTGCACGTGGTGCAAACAACTGAACTTCATCAAACCAGGTGAGCAGGAAGCAGCTCGCTGTGACACCTGGGCTCAGCTCATAGAAAGGGGCTGCATGGAAGAAGACATCATATCTCCCAAGAATGACTTTTCTTCTTCTAAGAACATCTCCCTGTCCAACACTGCATTGGACAAGGGGGAACCCATCCAGCTCCGTCCTCAGGAGGTCAATCTGAAGCTCAGACCAGGACTGCCTCATACATTCACGCTGGACTTTCAGAGAGTGGAGGGCTATCCTGTTGATCTCTACTACCTGATGGATCTCTCCTACTCCATGGAGGATGATTTGAGGAGCATCAAGACTCTGGGAAACGAACTGTTTAACGCTCTGCAAGGCATCACAAAAAAAGGACGAATCGGTTTTGGCTCTTTTGTAGACAAGACTGTCCTGCCATTCACTAACACCAACCCAGAGAAGCTGAATAAGCCATGCGCCGAAACAGAGATGTACTGCCAACCTGCTTTTGGCTACAGACATGTTCTTAGCATGACGGAAAAAAAAGCTGAGTTTGAGAGCAAGGTCAACAAGCAGCGGATCTCTGGGAACTTAGACTCCCCCGAAGGGACGCTGGACGCCATCATGCAGGCTGCAGTCTGTGGGGAAAGGATTGGCTGGAGGAATAGCAGCACTCGGCTTATCGTCCTGACCACCGACGATGGCTTCCACATGGCAGGGGATGGCAAGCTGGCTGGCATACTGGAGCCCAATGATGAGAGATGTTACATGGACAATAACCTGTACAGCAAGAGCAATGAAATGGACTACCCATCTGTTGGTCAAGTGGCTAATCAGTTAGAGAAGAACAACATTCAGCCAATCTTTGCTGTGACGAAGAACATGGAGAAGGTATACAGGGAACTCAGTAAAATGATCCCCAAGTCTGAGGTGGGAGTGTTGTCCGCTGACTCCCATAATGTCGTTGAACTGATAAAAAATGCCTACAACAGGCTCTCCTCCAAAGTGACGGTGACTCATGATGCTCTCCCTGACAACGTGAGAGTCACTTACACTCCACTCTGTCCTGAAGGGGGACCCTCAGGGGACAAAGGAGTGTGTAACAATGTGGGAGTGGGACAGATGGTGTctttcaatgtaacagtgacagcgGATGAATGTATGCAGAGTGAAATTTCTTTCCTGATTGGTCCGTTGGGAATGAAGGACAAGCTGAAGGTGAGCTTGTCGACTCTCTGCAAGTGTGAGTGTGAAAACCCTGTGACGGTCGATTCCCAGTACTGCAACGGGAAGGGCCAAGTCAACTGTGGCATGTGCAGTTGCAAAGCCGGCTTCGTGGGCCAGAAGTGTGAGTGCTCCATCGGGGAGAAGGACGAGAGCTCTCTGAGAGCGGCGTGCCGGAAGGACAACGGCACGGAGTGTGAAGGACgaggggactgtgtgtgtggcatttgcCAGTGCTACACCTTACCAGGCGGCAGCACCTACTACGGCACGAATTGCGAGTGTGAAAACGAGAGCTGCGAGAAGTTCCAGAACAAACTGTGTGGAGGGAACGGAAAATGCCGTTGCAAAAATTGCGAATGCAAACCCGGGTACGAGGGCACCGCCTGCCAATGCAAGAAGTCGGACGAGCAGTGTCGCACACCAAGCGGGAGTGTGTGCAGCGGCAGGGGCACGTGCAAGTGTAACCAGTGCAAGTGTATGGAGGGCTACCAGCGGCCCTACTGTCTGACCTGTCCCGCCTGCCAAACCACCTGTATAACCAAGGGGAAATGCATTGAGTGTCTGGGCTTTCAGACAGGCCCATTCAGTAAGAACTGCTCCCAGGCCTGTACGAGTATTAGTGAATTCAAGATGGTGGAGACGTTGCCACCTGGTAAGCCTTGTGATGTGAGGGATGTGGAGAGCTGCCGGGTGTTCTTTGCCATTAAACAGTTGGACGGAGAGGACAACTACACCGCCCAAATACTAAAGACCAGAGAGTGTCCCAAGTTGCCAAACATCTATGCCATCATTGGAGGCTCCATCGTAGGCGTGACTGTCATCGGAATCCTGATCCTGCTCTTCATCAAAGTCCTCTTCACATTGCAAGACCTGAAGGAGTACCGCAAGTTTATGAATGAGGCGCAGAAAACCAGGTGGTCAGAGAATAAGAATCCAATATTCCAGGAGGCAACCACCACCGTGGCTAACCCTACCTTCAGTGGAGAATAACTTCAGAGAAGTCAGTCAAGACATTCGGTTGGATGCAAATGCATACAtttattgtttctgttttaatGTGCATTTATGTAGATTAGTTCATTTAATTTATACATTGGTCTGTCTTTTTGTGTGTCCCGAGTCTGAACATTTAGAGAATGACTCGAAACTTGTACTGCTGGAGTGTTGCTACATGATCTTATGTCTAGTTGGAGTCAATTCCATTTTAGCTCGATTAAATGCAGGAATTTGTTTAGAAAAGCACTGAATAGTTTTGTGCAAGCCTGGTTTTATTTTGTTTGGGATTATAAACTGTTGTGTAAAAAGTTGGACACATTGTTCAACTTCATGAAACctattaaaggcccaatgcagtcaGCGTGATTCTCCAGTGTTTTATATACATtcccacactgaggttggaataatactgtgaaattgtaaaaataatgataatgcccttttagtgtaagagctgtttgaaaagaccacctgaaatgtcagcctgttttggtgggatggagttttggtgcCTGGTGACATCGCTAGGCGGCAAATTAGttgatagaccaataagaaatagtaacaaacctctctgccaataacagctagttttcagtattaccactcccagacagtcctcgctaaattattgcttgagaaatttctCATTGCTAAGATTTTTTTTGGTACAATTTAAAATAAAACAATCACATGTtactcagaaatgatttgatatcgaGATAAAATGGcagcattggacctttaagcaATTATTTTTGTAGCTTTTATGTAGTTATCTGCAATGTACCATGACTGTACATCATCATGAGTAAATATTGTATAAAGAAGCAAGTGAATTATGAAATAAAACTCTCTTGATTT

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component

KEGG:

id description
K06464 ITGB2, CD18; integrin beta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2044998 lncRNA downstream 81002 19687765 ~ 19688406 (-) True G1786380
TU2044997 lncRNA downstream 82239 19686490 ~ 19687169 (-) True G1786379
TU2044431 lncRNA downstream 278675 19490519 ~ 19490733 (-) True G1785861
TU2044427 lncRNA downstream 283073 19486128 ~ 19486335 (-) True G1785857
TU2044317 lncRNA downstream 449569 19319492 ~ 19319839 (-) True G1785752
TU2045193 lncRNA upstream 186795 19974320 ~ 19974561 (-) True G1786566
TU2045206 lncRNA upstream 201343 19988868 ~ 19989288 (-) True G1786579
TU2045273 lncRNA upstream 294861 20082386 ~ 20082662 (-) True G1786646
TU2045283 lncRNA upstream 303156 20090681 ~ 20091112 (-) True G1786654
TU2045341 lncRNA upstream 367938 20155463 ~ 20183323 (-) True G1786709
XM_021579239.2 mRNA downstream 5548 19743720 ~ 19763860 (-) True vil1
XM_021579240.2 mRNA downstream 7543 19743720 ~ 19761865 (-) False vil1
XM_021579233.2 mRNA downstream 103207 19655763 ~ 19666201 (-) False znf142
XM_036958937.1 mRNA downstream 103207 19655763 ~ 19666201 (-) False znf142
XM_036958934.1 mRNA downstream 165850 19572445 ~ 19603558 (-) True LOC110501567
XR_005038965.1 mRNA upstream 1269 19788794 ~ 19789923 (-) True LOC118943631
XM_021579249.2 mRNA upstream 408187 20195712 ~ 20202996 (-) False agr1
XM_021579248.2 mRNA upstream 408187 20195712 ~ 20203864 (-) True agr1
XM_036958953.1 mRNA upstream 591940 20379465 ~ 20502301 (-) False hdac4
XM_036958949.1 mRNA upstream 591940 20379465 ~ 20551605 (-) False hdac4
TU2044972 other downstream 110308 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 447549 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 590224 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 591668 19175567 ~ 19177740 (-) False LOC110501547
TU2042338 other downstream 1865457 17870128 ~ 17903951 (-) True G1783895
TU2045476 other upstream 558174 20345699 ~ 20346014 (-) True G1786832
TU2045833 other upstream 602991 20390516 ~ 20455983 (-) True G1787166
TU2047639 other upstream 2003231 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 2630605 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 3376956 23164481 ~ 23169363 (-) True G1790280

Expression Profile