RNA id: XM_036958953.1


Basic Information

Item Value
RNA id XM_036958953.1
length 8701
RNA type mRNA
GC content 0.49
exon number 25
gene id hdac4
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20379465 ~ 20660978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATACACTCTTCGAAAAAGGGTTCCataagggttcttcagctgtccccataggagaaccaatTTTGCTTCCAGGTAGAGCTCTACCAAAAAGGTTATGCTATGGGGAcggccaaataacccttttaggttctagatagcaaaaCATTTTCTATGAGTgtagatggagatggagagagagtaagTGAGAACTTGAGataggtaggagagagagattaAGTAAGATAGATGTAGGGAGACAGAAGGgatagatagagaaagagactGTTAGAGTGAAGGGATAGAAAAGGGAAAAGATAGTGATGTAAAGACAGAAttgatagatggatagatagaggattagagatggagagagaaatgaggcAATCTAATTGTGGCATCTGGCAGCGCCACCCCGCCACAGTGACTTGCTAATCTGTAAATCTTCTCTCGAGCACTTTCCCTGTAGACCAGAGCCTGCTGCGCACTGACTGGCCATATAGCAGTCTGGAATCACACCCAACCCATGTGGACTTAATGAGAGAGGGatatggagggagggtgggagagagagagggatggaggttgggaagagagggaagaaaacAAAAAGGAAAGGTATGGTGATGGAGGGATATGAGTGGGGTGAAGAAGGGATAGAGAACAGGTGAAATGGAAAAGGAGAGCATTTCGATGGCGGTATCCGAGCAGACATGCGCGAGATAAGGAGGACTGATGGAGGACAAGAAGTCTGACAAAGGAGGTATAGGAAAAGAGGTAGACATGAACAGAAGTACAAAGAGAGGGACGCTGAGGGAAGAATGACAAGACAGCGAGTGAGGGATGAGAAGGGTGTGAAGTGGGGGATTAAGAATGATCTGGAGAGTACAAAAGAAGATCATAGAAGTCAATGGGTGAAAAagaagagggggaaaggagggggagagtgacaGATGTAGAGAGAGTTAAAATATGGaaaggagagagttagagagaaagaaaagaatgAGGAAGATGGATATAGACAGTGAGAAGCAGAGTTCCCCACAGTAGTTCTGTCCCTTCTGTAAAAATCAGCCTGTTcaatgaaggagggagggagaggggagagaggcacACAAACACTCAGCATGCCTAAAACTGCCCTCTGATGTCACCagcccctggagagagagagaggggaggggaccaGTGAGATGACTGAACGAGCGAGAGACACAGCCAGAGGGCGAGAGCAAACAGagcagagtgagagaaggagagcgacagagagagaaaacagagaggtgGCGACTGAGAGCACTGTACCGGCGTCTGCTGTGGACTTGAGGCTGTGTTTTACGGCGTGTGGTGTGTCAGTGGTGGAGAGTTTTGCTCCGGTTCAGTGAGGCCGATCTAGCGATCGCGTTGGCCACACACCATCTGGACAGCACAACTGATGGTCGACGTGAGAGCGGCACTGCCCATGCAGGTGCCCCCGGCCGCCATCCCCATGGACCTGCGCATGGACCAGCCCTTTGGCCTGGCACCGCGACCAGACGACCAGGGCCACCAAGGACAGGTCCCAGGTCTTCGGGAGCAGCAGCTGCAGCAGGAGCTGTTGGCCCTCAAACACAAACAGCAGATCCAGAGACAGCTGCTCATCGCCGAGTTCCAGCGGCAACATGAGCAGCTCTCACGCCAGCATGAGGTCCAGCTACAGGAGCATGTTAAGCACCAGCAGGACCTCCTGGCCCTGAAGCATCAGCAGGAGCTGCTGGAGCaccagaggaagatggagagacacCGCCAAGAGCAGGAGATGGAgaagcagcagagggagcagaAACTCCTACTGCTCAAGAACAAGGAGCGTGGCCAGGAGAGTGCGGTGGCCAGCACGGAGGTCAAGATGCGGCTGCAGGAGTTTGTCCTGAACAAGAAGAAAGCCCTGGCTCAGCGCAGCCTCAACCACTGCATGAACACTGACCCTCGCTACTGGTACGGGAAGACCCAGCACAGCTCCCTGGATCAGAGCTCCCCTCCCCAGACAGGGATGTCCCCTTACAGCCACGCCATCCTGGGGATGTACGACCCCAAAGACGACTTTCCTCTCCGCAAGACAGcctctgAGCCCAACTTGAAGCTCCGGTCCAGGCTTAAACAGAAGGTGACAGAGCGCAGAAGTAGCCCACTGCTACGTAGGAAGGATGGTCCAATAATCACTACTGCCAAGAAGCGCTCTCTGGACATGGCTGAATCGGCCTGCAACAGCGCACCTGGCTCGGGCCCCAGTTCGCCCAACAACAGCTCCAGTAACATCACCAATGAGAACGGCATCGCTAGTACAGTCGAGGCCTCCCTGGCCCACAGGCTGGCCGGCCGAGAGGGCCCCTTGAGCCAGCTGTCTCTGTACACATCGCCCTCACTGCCTAACATCACCCTGGGCCTGCCAGCCACCGGCCCGTCCAGCATGACGTCAGGCCAGCAGGATGGTGACAGGCTATCGATGCATGAGAGGCTGCAGCAGGGCTTCCCCATAACCACTCCCTTCATCCCGGGGGCCCACCTGCCCTCCTACCTGACTGATGGGGGCTCGGCACACAACCCCCTCCTCCAGCACATGGTGCTCCTGGAGCAGTCCCAGAACCCACTAGGTCTGTCCTGCTGCCTGGGCGGGCTGCCCTTGCAGTCGCCCTCCATCCACAAGCTGCGTGGGCAGCACCGTCCCCTAGGGAGGACCCAGTCGGCCCCTCTGCCCCAGAACGCCCAGGCCCTGCAGCAGCTGGTGGTccagcagcagcaccagcagtTCCTGGAGAAACACAAGCAGCAGTTCCAGCAGCAGCAACTGCACATCAAcaagatGATGGCCAAGCCCAGCGAACCAGGGCCGGGTCGACAGCACGAGAGCCACCcggaggagacagaagaggagcTAAGGGAGCACCAAGCCCTGTGTCCCCAGGAAGGAGTCCTCATGCGCGGGGTGACGGTCAAGCAGGAGCCCCTGGACCctcaggaagaggagagggacaaccGAGAGAGGATGGTCGACCAGGAGCTGCTCTTCAGACagCAGGCTGTGTTATTGGAGCAGCAGAGGATGATCCAGTTAAGGAACTACCAGGCTTCCATGGAGTCAGCCGGCCTGTCAGTCACCTTCCCAGTGCACCGCCCCCTCTCCAGGGCCCAATCATCTCCCGCCTCGGCCTGCTTCCCCCCCATTGTGGTACAGCAGGAGCCGCCCATCAAGCCTCGCTTCACCACTGGCCTGGTGTATGACACGTTGATGCAGAAGCACCAGTGTATGTGTGgcaacaccaacacacaccccgaGCACGCCGGACGCATCCAGAGCATCTGGTCCCGACTGCAGgagactggactgaggggcaaGTGTGAGtgtATCCGAGGGCGGAAAGCCACTCTGGAGGAGTTGCAGACGGTTCACTCTGAAGCCCACGTCCTTCTGTATGGAACCAACCCACTCCGACAGAAACTAGACAgttCATTGACTCCCATGTTTGTGAGGCTGCCTTGTGGAGGGGTAGGGGTGGACAGCGACACCATTTGGAACGAGGTCCACTCGTCCAGCGCGGCTCGTCTGGCTGTGGGCTCCGTTGTGGAGCTGGTCTTCAAAGTGGCGGCTGGAGAGCTCAAGAACGGCTTTGCTGTAGTCCGGCCCCCTGGACACCACGCGGAGGAGAGCACACCTATGGGATTCTGTTACTTCAACTCCGTGGCCATCGCAGCTAAACTTCTGCAGCAGAGGCTCAGTGTCAGTAAGATCCTGATTGTGGATTGGGATGTTCACCATGGAAATGGCACGCAACAAGCATTCTACAGTGACCCCAACATTCTCTATCTGTCACTCCATCGCTACGACGATGGCAACTTCTTCCCCGGCAGTGGAGCGCCTGATGAGgtGGGCACTGGGGCAGGCATGGGCTTCAATGTGAACATGGCTTTCACTGGGGGGCTAGAACCACCCATGGGAGACGCAGAGTACCTGGCTGCCTTCagGACGGTGGTGATGCCCATCGCCAATGAGTTTTCTCCTGACGTGGTTCTGGTGTCTTCAGGATTCGATGCTGTGGACGGCCACGCATCACCCCTGGGAGGGTACAAGCTAACAGCCAAATGTTTCGGCTACCTGACCAGGCAGCTGATGGGGCTGGCCGGGGGACGCCTGGTACTGGCCCTGGAGGGGGGCCATGACCTCACTGCCATCTGCGATGCCTCTGAAGCCTGCGTCTCTGCTTTGCTAGGAATCGAGTTGGATCCTATCCCTGAGGAGGTGATGCAGCAGAGGCCCAACCCCAACGCTGTCCACTCCATGGAGAAGGTGCTGGAGGAACATGGTAAATACTGGCGATCTCTGCAGCGCGGGGCCTCCACACTGGGCCACTCTCTGAGCGAGGCTCGTCAGTGTGAGACGGAGGAGGCCGAGACCGTCACTGccatggcctctctctctgtggccaacAAGCAGAGGAGGAGCGAAGAGGAGcctatggaggaggaggtgcctCTGTAAAGGGATGACCACGCCCCCTTTACCATTCAGACACCCATTTAGTCCTCAGCCAACCACTAACCTCCGTTTGAATTTGACCCCAATCCTTGGCCCCTCCCACGCCCTGTCTAGAAGGCACATCAGCCCCGGGGGGGGACAGGGGACAATGTTGAGCGGTTACGAAACGGAAACAGAAGACGACACTATCTCGCTCGTCCGGAGTGGACGGACTAAATGGCCGCCGATATGTTGTACTGTCTCTATGTAAGGAGGCAGAACACAAGGAGCCTCGGGTTGCCAGGTTTCTTCGGATCTTTACTTCAGGACCAGTGGGATCTAAGGTGACCTTGAGTGTCCATGCTTTTTTTGTAACAGACACACTCTCTGTCTGAAGTACCACTCCAGACACCGAATTTCTAAGTTAGCACTCTTCTTTCATTTTTCTTTATGTCGTTTGTTCCTTTTTCCTCTCACTGAAAAACAGCAACAGCGCCCTATGATATAATTCCGACACTGTTTACGAACTTTCAGTCGTTACCATTCACAAAAGACTTTGAGAAAAGAGAGACGCCGCAGGGCTTGCTGAAATTTCTGGCCAACTTTTTGTTTGGCGAAAgcagacattttttttgtgttgCAAGATGGGTACaaagcgaggaagagagagagagcacgatgGACGTGTGACCAGGTCTTCTGGTTCGAGATGACAGACAGTAAAAAGACTGAGTTTGTGCCTTTTTTTCCCAGCCTGGTGGATTCTACGATGAACTCACGACGAAGAGCTTTGCCTTAAATGAGTTTTCGAGGGGAGAGAGGTGCCCTCCTCTCGCCCTCACACCTCATCCCCTTATGTTGTGGCGAGACTGGAAATACCAGCACGATGGCACATAGACAGAAGGCCCTTGGCATGTTTACCCTGAATTCCCTGTAGCCCACTGTCCCATCCCTGTTCCCTTTGACCTCGTCGTAACCCCTTTTACTGTCATTTAGAAGGTAGTTGCCATGCTACACAGGGACTAACATGGTTAGTCTTTTTCAGTGGAACTGAATGGTTGAATCAACGGTTGAAACATCAGCCAATGATGTAGCGAGCTGGTATATAAACCCTTAACCAAATACACGGCACCTCTTCGAAAGAGTTAGCTAGCATGCACTGTAGTCTGCACTAGAGAGACTTGCCATCTTAAACGAGAATGCTGTTCAAAAATGGTAGTAGGTAAGGCAAGAAATCAAGCCAAAGCGTGACACTGCTATCAGCGCAATAGTCAGGATCCACGTAAGTATTGTAAGCTTATAAGACAGATTTTACTATCATGACTTTACATTCAAGGTTGTTCTCGGTGAGGGAATTAGAACAGTTGCCCCATTTTTGTTAACTTTCACCCCTCACCTTTCAAAACGTTCTAATGTCACAACGTTCAGACGATCTTACAGTCATTTAGGGGCAGTAGATACAACGAGCCGTTCTTTTGGCGTTTtgttcacacaaaaaaaaaacatgtgtctTTGTTACCATGGTGACAGAGCAATTAGACGGACATACCACCTCTGTGAGTTTTCGGAGAGGAGCAAGTGTCAGGTGCTAGCGAACAGGTTCATGCATGTGCGTGTGTACGTGAGTGTCACGTCGCAATCCAGTAAACAAACTCTTTATACACTCAGACACAGTTGTCATAGCTACTGCTAGGAGTGTTTGGGGTTTTTTTTGGTACAGGAAAGTGTATTCAATCTTGTGTGAGACACATTAAATAACTGTATATACAATACATTTGCACGCATGCTGTCCAAAAACTTTCTTACCACACACAGTTGACTTTGTTCTCAAACACCTATAGTGCAGAATATGGAGAATGAATGATATAGTGATCCATATACGGTGTATTGAACAACCACACCCCCAACTCATGTTTAGCCTCTGGGCAACTACCTTCTACATTATTCCATTGAAGTCATAATCACTTGTTTCTACTTTTGGTAAAGGAGGAAGAACTGGGGAAGATTGATGTTGTTTCTGCATTGATCTTTCTTCCGGATTTTTCCAACGCAGTTGTTTTGATGACTACTTCATTTGTGTGGTTTTTACCAATATTTTtgggtatttttttatttgttttcgtTTTTGTCCTTGTTGTCTTTTGAAGTGGACTTCTGTGTCTCTGGTTTCTGTACTTTTCATTTGTATTCctgttgtttttgtattattttcagTTTTTTCTCTCTGTTACACTTTCTACAGTTGACTTGGTCTCACGACCAAGTGAGAGTTCAGTTCCTTTTCATGGCAAAAGGATCTGGGGTTgtaaggggagggatggagagagatggggggtggaATTGCAAATATTTCTACTTTGTATAATGATTCCAACAATTGTGTATTTACTATACTGTCTGTTCATAGTAGATTTAtatatgacaaaaaaaatctaaaagtatattatatattataacaTATTACAATCTTGTTTTGGGAGGGAAAAAAGTTAGTATTGCAAGGTGATTTGCTCATGTTTCATTCGCTGGTCTGGTTTGGCACTTCCTGGTGTTGCAGAGGGCACTGTTCATTATTCCTGGATGCCTTGGCTGAGGGTTCAGTACAGTAGCATCCCATTTGTTTCTTTACAGTGTACACCACTGACTTAGGCTCTATTCATACTTGACACTACATAGAAAAGTTGAAAGGTTGTTCCCAAACAAGGGACAAGTCACTTGTTTCTGGAGCTCTGATGTCTCCTCCATGAAAACACTGACAAGCATGAGTTTACAGTGCGAAGACCACTGGTATTGCGCACACTTACATAGATAAAATTTTCTGACCAACAACCAAACACTTTTAACTGTGTTTGTAAAACCTTCTCTATATTATCGATTAAATGATGTGTAATTCAGTAGGGTTTGCCTTGGAATGACATGATAATTACACAAGGGTTGCCCTGTAATGACTAAACACTATAAGCCCAAGGGTCATAGTTAACCCATCAATAGTTCCCCTCTCACCCTTTAACCTCACCCATCCTGCCCAAACCGCCCCTCTCCTTTGACGGCTGTAGAAGATGACTAGTGAGGTCAAGGGTCATCTCAATGGACCCAGTCTCATCCAAGGGGGCAGACTACGAGTTAAAAGTCCAGTCTGCGTCTCAATTGTGGTTGCCGTTATTGTATTTGGGGCCTTTTTATAAGCTATCATCCAGAGCTCTCCCAGGATGCTTGGAAACACCAGTCACAGCAATGGCCGCCATGGCTTAGTCACTTGTATTCAAACAATATTTTTTAAAGGGACTATATACTGTCTGGTTATCAGCGTGTCCAGATAGTCATTTGAACATGATCTTAATCATGCTCAACAAAATACATtccaatttgttttgtttttaattgttttatcATGGggcattttcttcttcttctcctccaaaCCAGGCCTGAGGATTGTCTGTGGTTTATTAGAAGGGCCTGGTTGTTGGGTTACTGCACTCTTCCACCACCTCTGTAACATATCTGCATGGTTtgtgtgtctgcatgcctgtctctgtccctgtaacATATCTGCACAAGGAAAGAGCACTGAATGGACAGAAGTACGTTTTTTTTACAACAACATCGGGATTTGAGAACGAGAGCATGATGTGGGAACTCGTTCTTTTGCTCctctgtttttttctttcttcccgGGAGCGACGATGAGGAAGAACGATGCTCCCTGTTGGTCTGACAGATATGCTTTTTACCTGTGAAAATGTTCAACAACAAATTGAATGACTTTGAATATTTCACAACATCTTTATCTAGCACTTGTGACATACAGACAAtggattttattgtatttatgtaGAAAAACTGTTTTAGGGAAACTAAAGACAGGGGACAACTGCATAGACCAATTTatttttctttggggggggggggggggtgttatcaTTTGAGGGACGGACGGGTTTTGTTTCGAGACATCTGGAGATATCAAAGGGCTCTGTCCAGATGAATGGTCTATATCGTCGTCAGGGTTGTCCATTCCATTTCAGCCAGTAATATCTGTGACCACTGTGGTTTAGAAAAAAAAGAACAGTTCTAGGTTTACAAAATGTATGACATGCATATTCTGTTTTTTTAATTGTCTTTATCTCTCCATTGTTACAGAATAGTACTTTTTTCCTGGGTCCTTTCCTCTAACATTTTCTCTTTGACATCTACACTATAAAATCTAATGTTTTGGAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2045490 lncRNA downstream 25388 20353747 ~ 20354077 (-) True G1786846
TU2045478 lncRNA downstream 32833 20346146 ~ 20346632 (-) True G1786834
TU2045456 lncRNA downstream 54530 20324712 ~ 20324935 (-) True G1786815
TU2045455 lncRNA downstream 54974 20324200 ~ 20324491 (-) True G1786814
TU2045444 lncRNA downstream 76882 20302162 ~ 20302583 (-) True G1786804
TU2045931 lncRNA upstream 22472 20524773 ~ 20532999 (-) True G1787259
TU2046704 lncRNA upstream 596012 21098313 ~ 21122358 (-) True G1787982
TU2046732 lncRNA upstream 634242 21136543 ~ 21136749 (-) True G1788010
TU2046736 lncRNA upstream 636028 21138329 ~ 21139127 (-) True G1788013
TU2046737 lncRNA upstream 638757 21141058 ~ 21141545 (-) True G1788014
XM_021579248.2 mRNA downstream 175601 20195712 ~ 20203864 (-) True agr1
XM_021579249.2 mRNA downstream 176469 20195712 ~ 20202996 (-) False agr1
XR_005038965.1 mRNA downstream 589542 19788794 ~ 19789923 (-) True LOC118943631
XM_036958941.1 mRNA downstream 591940 19769408 ~ 19787525 (-) True LOC110501577
XM_036958940.1 mRNA downstream 591941 19769408 ~ 19787524 (-) False LOC110501577
XR_005038959.1 mRNA upstream 188215 20690516 ~ 20692314 (-) True LOC118943627
XM_036958954.1 mRNA upstream 228609 20730910 ~ 20739077 (-) False LOC110501586
XM_021579255.2 mRNA upstream 228609 20730910 ~ 20739398 (-) False LOC110501586
XM_021579256.2 mRNA upstream 228609 20730910 ~ 20739420 (-) False LOC110501586
XM_021579257.2 mRNA upstream 228609 20730910 ~ 20739954 (-) True LOC110501586
TU2045476 other downstream 33451 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 720365 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 1057606 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 1200281 19175567 ~ 19179184 (-) True LOC110501547
TU2044261 other downstream 1201725 19175567 ~ 19177740 (-) False LOC110501547
TU2047639 other upstream 1288455 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 1915829 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 2662180 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 2930693 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 3824428 24326729 ~ 24327127 (-) True G1791405

Expression Profile