RNA id: XM_021579257.2


Basic Information

Item Value
RNA id XM_021579257.2
length 3863
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110501586
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20730910 ~ 20739954 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCTCGCTCCAAtcggaaaggggggggggggggggcgctatgTGCCACATAACAGCTGGGGGCACATCCCACAACAATGAAGATTGTAGCACCATTTTCAAATTCCCACCACACCAACATGCAGAGTTGAGtgtccctctccccccactccgGAGTCACCATGAGCTGGAGTTTCCTGACGCGTCTCTTGGATGAGATCTCCAACCATTCCACTTTTGTGGGAAAGATCTGGCTCACGCTGCTCATCGTCTTCCGCATTGTGTTGACGGCTGTAGGAGGCGAATCCATCTACTACGATGAACAGAGCAAGTTTGTGTGCAATACGCACCAACCCGGTTGCGAAAATGTGTGCTACGACGCTTTTGCGCCGCTCTCGCACATCCGTTTCTGGGTCTTCCAGGTGATCATGATCACCACCCCCACCGTCATGTACCTGGGCTTTGCCATGCACAAGATTGCCCGCATGGATGACGAGGAATACAGGCCCCGTGGTAGGAGAATGCCCATGGTGAGCCTAGGGACCAACCGGAACTACGAGGAGGCGGAGGATAATGGTGAGGAGGATCCCATGATCTCGGAGGAGAttgaggtggagaaggagaagaagaaagaggagaagcCCAACAAGAAGCATGACGGGCGCCGGCGCATCAAGCGCAATGGCCTCATGAAGGTGTACATCTTCCAGCTGTTGTCGCGTGCTGCTTTCGAGGTCTCCTTCCTGTTCGGCCAGTATATCCTCTACGGCCTGAAGGTGTCTCCCTCGTACGTGTGCAAACGCTCCCCCTGCCCGCACACGGTGGACTGCTTTGTGTCGCGCCCCACAGAGAAGACCATCTTTTTGCTCATCATGTACGGGGTGAGTGCCCTCTGTCTGCTCTTCACCTTGCTGGAGATCCTCCACCTGGGCTATAGCGGCATCCGGGACTGTCTCTGCCGCCCTCGTCCCCCAATTCCCCACCAACTGGCTAGCCAGCGTCCCACACTATGTGGCCACCGGGTCCCCACAGCTCCTCCGGGCTACAACACAGCTCTGAAGAAGGACCCCAAGGGCATGCGGTTGGACTACAACCTGGGCGACTCGGGCCGCGAGTCGTTTGGGGACGAGACTTCACAGCGGGAgctggagaggctgaggaggCACCTGAAGCTGGCCCAGCAGCACCTGGACCTGGCCCACCTGAACGAGGACAACCGCAGTCCGTCGCGGAGCAGCAGCCCCGAGTCCAATGGGACGGCCGTGGAGCAGAACCGCCTCAACTTTGCCCAGGAGAAGCAGAGCAGCACCTGCGAGAAAGGTTTGCGAGCCTAACTTCTTAATTTGCCCACCTGGCCCTCTAATGATATATTCTCGCATCTGGGACAGTGGGGGTATGAGGGAGCATTGTGTGGGAACAGGTGTTGTGTATATGTGACTTGAGAAGGATTAATTGGTCTGCCTTTCAGTATTGAGGCCAGTGAACGCTCAACTGAAACATGCCAAACTCAACGAGCAGGCTCTTCCTACCCAGCTACACTTGACCATGTCTGAAGATCCAAAGTGACCCAACTGTTTTCAGAACATGCCTATTAGTATCTCAGGGcagctgtgctgttttgttgaaCTTcctttagtagtttgtaattatTCCTCTTTGCTGGAGTTTAGAGGGGTCCATCTCAAGTTGGCCTTGAACCTAAAACTGTAGTTTAAATTTCAGCCATTCCAAGAGGGAATGGAAAGTGTGTCACAAAACCATGTCAAATTTTTTTGGGTGTGTTTTGTGAGGAATAAGGAACCACAGTGAGTCAGTGTTTGAACTGGTATGGTAATATACAGGGCTCTTTGCTGTTGAGCATAAGAAAAGGTACTAAGTGGCCAATTCAGAGGGTGTTGGTGATATTATGCTGTGAATAACTGTCTTCCATGTGCAACAGCTTACAATTAGTAAATGGTTAAAACTATATGTTATAACTGTTATATTCGAGTTGTAGCACACCAACAGCAATACGTAGTTTgcagaaataacttattttgaACATGAACCCCCCCCCAAATCTGATGCCAAGTCTGGGAACTGGAAGCCTTTTTTGGCACCTTTGTCCAAAGGATCAAAAACCTGGGTAATGCTTGAATTCATGTACATTATCTTGTATGTTTTATGTAACACATGCTTTTTGATACTGTTCTTTCATTTAGTTTTATATGGTAAATGTTTGGATGATATTGACACTTGGAAGTACAAAATGAAGCCTTTAAGGCAGTGGTATTCAAAGTTGTGGTCAAGCCCAAATAGTTTTGAACACATTTTTGTATGGGACAATAAACATTTTGAGAAAGATaattagaaaaaaaattgtgTTCAGTAAATGTATCTATTGGTTTCTTCATTTTGATAAGAGATTAAAACGTAatgaattgaaggttatttgttgatgtaaagataggaattcacacaaaaaaaatcattttaaGGTTGTCATTAGATTCGGGTTGGGGTTGCAATACATTTTTGTGAGGGTGGGGAAATGGGGTACCGCTAAAAAATGTTTGAATACCACTGCTTTAAGGCCACTGTGACCAACTAGTAACAAGTATGAAGTTccctgcttggggggggggggggggggggggggtccaggtcCGGTTAACTAAGCATTTCTTCTGTCGAATAGCATTTTCAGAAAGCAAGCCAATTGTCCCCCAACTCGgggttatatttttttatacattgtgTTTCCCCTGAAATTTGGACCTGTATATTTGTGGCTTTGTTACTTCTCTACACATTTCAAAATCTTACGATCGGTTCATTGAGGCAGcgagtatgtttacatgcacactaataattcgaTGTTCAACTTATGGCAATGGTCATGTAAACACTACTCTCTTCATCTTGAATCGGCATAATGTTAAAATCGAAATAAGCATACGTTGATTAAAACACCCGGTTTTCTGAAATCTGTAGAATTAAGATGGCTGATTCGGGGTTCCagctgtgtatttgatctgcCATGTGCCAGTAGTGCAAGCCTGCCTCTTATCTGCAAGTGAGTTCGGAAAAACTGAAGGTATGCATCTTAGAAATAGTTCACATGCAAACGTTATatgtccgaactcagaatcaaataggTGTCACAAACAACATGGTCAAATGTTTATTTTGATGGCTTTCTGCATTTATTTAAGTCCCATTAGGTAGCCCGGTTACATACGTGAaaaggattattagggaaattgtTCTTGCAGAGCTTTTAAACAAACGATTCGATATTAATCTGGTTATGCACAAACCGTGTGCATGTTACTGTACTCTGATGCAAATCAAATTCAAGCGCCTTAAACTGTTAAGAATGACCTCCATGGTCCTGTCTGTTTTATCTTTTAACAGTTAAAACAACTCAATGCCTTGAACATGATCATCTATAATGCAAACGTTCATGTTATCTTTTGAAGGTTAAAATGACCCAATGCCTTGAATGTGATCTGATGCTGTCAGTGCACTCTAACAGCAGTGCCATGAAGTGTAAACTCATCTCAAAACTATTTTTTTATACTTGCTTTAGTACTTTTTTTATTTCTTACactttttcaaataaattcatgtcTACCTTGAGTATCTGCAAATTGTATGTAATGCAATGTGTAGGCTGGTGTATATTAGGTATGTACATTTTCGGTCTACAATATAACACTGAATTGTGCTATCAAAATATCTTGGCACTCACAGGATTTGCAGCTGGATTCGTGTGAGGGGCCGTACTTATTTGATCCCATCGATGCAATTCCTGGCTGCAGTGTTCCAAACGTGTTTTGCGCCATCATAATTTGGTGATATTGGCAAATGTCACCCTATGAGGGTTTGCGTTTGCTTGGTT

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2045931 lncRNA downstream 197911 20524773 ~ 20532999 (-) True G1787259
TU2045880 lncRNA downstream 330797 20398852 ~ 20400113 (-) True G1787208
TU2045490 lncRNA downstream 376833 20353747 ~ 20354077 (-) True G1786846
TU2045478 lncRNA downstream 384278 20346146 ~ 20346632 (-) True G1786834
TU2045456 lncRNA downstream 405975 20324712 ~ 20324935 (-) True G1786815
TU2046704 lncRNA upstream 358359 21098313 ~ 21122358 (-) True G1787982
TU2046732 lncRNA upstream 396589 21136543 ~ 21136749 (-) True G1788010
TU2046736 lncRNA upstream 398375 21138329 ~ 21139127 (-) True G1788013
TU2046737 lncRNA upstream 401104 21141058 ~ 21141545 (-) True G1788014
TU2046927 lncRNA upstream 650258 21390212 ~ 21395471 (-) True G1788199
XR_005038959.1 mRNA downstream 38596 20690516 ~ 20692314 (-) True LOC118943627
XM_036958951.1 mRNA downstream 69932 20379465 ~ 20660978 (-) False hdac4
XM_036958952.1 mRNA downstream 69932 20379465 ~ 20660978 (-) True hdac4
XM_036958949.1 mRNA downstream 179305 20379465 ~ 20551605 (-) False hdac4
NM_001124521.3 mRNA upstream 25958 20765912 ~ 20777157 (-) True LOC100136257
XM_021579259.2 mRNA upstream 403130 21143084 ~ 21295829 (-) False LOC110501587
XM_021579258.2 mRNA upstream 403130 21143084 ~ 21447200 (-) False LOC110501587
XM_036958955.1 mRNA upstream 403130 21143084 ~ 21447200 (-) False LOC110501587
XM_021579260.2 mRNA upstream 403130 21143084 ~ 21447203 (-) True LOC110501587
TU2045833 other downstream 274927 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 384896 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 1071810 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 1409051 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 1551726 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 1050802 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 1678176 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 2424527 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 2693040 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 3586775 24326729 ~ 24327127 (-) True G1791405

Expression Profile