RNA id: NM_001124521.3


Basic Information

Item Value
RNA id NM_001124521.3
length 2421
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC100136257
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20765912 ~ 20777157 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGAAGAGTTCCACGTGTGTGAGTGCTCAGCTGCAATCATGGCAGATCTTCAGATGAGGCTTCTTCGgcagaaaatccagaaaagaaGCGTAAAGAACAAAGAGCGAAAGCTACTTCAGAAACGGAAACAGGAGAAGGATAATGACGACGCAAACGGACTTCCAGAGGAGTGTTGTGATGAAAAGAGTCAGGTGGCCACAGCCATATCAAAGCCACAGAATGCCAAACCCACGAATAAGCAGCAAAAAGAGAAGAATGGGCCGGCAGAGGTGGACACAGAACATTTTgtcaagaagaaaaataaaagaAAGCTCAACACCACTGAACAGCCAGGTGTGAAAAAAGCGAAGAAGGAGGAAGATGTGACAGAGGAGGATGCTGATCAGACCACAGACAAAGCCACACAGCCTCTTGAACAGGGAGATGAGGGGGGGGATGATGAAGAGGAAAGTGAGAATGGGGCGGAAGGAGAAAAGTTTGAGGATACTGAGGAGGAAGATGAACCAAAGCTCCCATCTGGCTTGACAGGTGCGTTTGAGGACACGTCGTTTGCCTCTCTAGCGCCTCTGGTGAGTGAGAACACTCTAAAGGGTGTGAAGGAGATGGGCTTTGAGCACATGACTGAGATCCAACACAAAAGCATACAGCCCCTATTGGAGGGAAGAGATATCCTGGCTGCTGCTAAGACTGGCAGTGGTAAAACCCTGGCCTTCCTCATCCCTTCCATCGAGCTCATCTACAAACTTAAGTTCATGCCCAGAAATGGTACAGGCGTGGTGATCTTGTCCCCAACGCGCGAGTTGGCCATGCAGACGTACGGCGTGATGAAGGAGCTGATGACCCACCACGTGCACACCTTCGGCCTGATCATGGGCGGCAGCAACCGCACGGCCGAGGCCCAGAGGCTGGCCAATGGCGTCAACATCCTGGTGGCCACGCCCGGGAGACTGCTTGACCACCTCCAGAATACTGCTGGCTTCATGTATAAGAACCTCCAGTGTCTGATTATTGACGAAGCTGACCGTATCCTGGAGGTCGGCTTCGAGGAGGAGCTGAAGCAGATCATCAAACTCCTGCCAAAGCGGAGGCAGACGATGCTGTTCTCGGCCACCCAGACCCGTAAGGTGGAGGACCTGGCCCGTATTTCCCTGAAGAAGGAGCCCCTCTACGTGGGTGTGGACGACAACAAGGACAATGCAACCGTGGACGGCCTGGAGCAGGGCTATGTGGTGTGTCCCTCAGAGAAGCGCTTCATGCTGCTCTTCACCTTCCTGAAGAAGAACCGCAAGAAGAAGCTGATGGTGTTCTTCTCCTCCTGCATGTCGGTCAAGTTCCACTACGAGCTGCTCAACTACATTGACCTGCCTGTCATGGCCATCCACGGGAAGCAAAAGCAGACCAAGCGTACCACCACCTTCTTCCAGTTCTGTAACGCCGACTCAGGCATCCTGCTGTGTACAGATGTGGCGGCCAGAGGCCTGGACATCCCTGAGGTGGACTGGATTGTCCAATATGACCCCCCAGATGACCCCAAGGAATATATCCACAGGGTGGGCAGAACGGCTCGCGGGATCAACGGCATAGGCCATGCCCTCCTAATCCTCAGGCCAGAGGAGCTGGGTTTCCTGCGCTTCCTCAAACAAGCCAAGGTTCCTTTGAGTGAGTTTGAATTCTCTTGGGCAAAGATCTCTGATATCCAGGGTCAGCTGAATAAGCTGATTGAGAAGAACTACTACCTGCACAAGTCAGCCCAGGAGGCCTACAAGTCCTATGTGCGGGCGTACGACTCTCATTCCCTCAAAGCGATCTACAGTGTCAACACGCTCAACCTCCCCATGGTGGCACAGTCTTTCGGCTTTACTGTGCCTCCCTACGTCGACCTCAACGTTCACAGCAAAGGAGGACTGAAGATGACGAAGAGGGGTGGAGGTGGCGGCTTCGGCTACCAGAAGGGCAAGCCCGCTCACAAAGCCAAAATCTTCAAGCACGTCAACAAAGGCAAGGGGGACAAGAGGCAATTCTCACGCTGACCTGCGGTCCTTGGGGGGCCActacaaaatggcttcctggCCTGGACGCACTCCCCTCTCAATCTCTATCTTATCTAGAGACCCTGTAATGGGCGTCATGTCTCGCTCCCTAATTGTATGTGTTAGAACAGTCTCTTGCTACCTGTCGGAGGCCCAATTTCCGCTTCAATGCCTCCACCTGTCTTTCTGGACAGGTATTTTGTATCTAGTGACAGGGCTCTCTGGGCTAGTAACTGTTGAGACAGCCCCTGCAGTCCTTTACTCACAGCAGATGTGGATTTTACCTTGGACTGTCTTTGATTTAATTATACAGAACTGTACATTGCTAAATGTATTTCCATGATTTTCATCCTTCTACTTTACTGGCTAATTAAAACGTTTATACACCC

Function

GO: NA

KEGG:

id description
K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2045931 lncRNA downstream 232913 20524773 ~ 20532999 (-) True G1787259
TU2045880 lncRNA downstream 365799 20398852 ~ 20400113 (-) True G1787208
TU2045490 lncRNA downstream 411835 20353747 ~ 20354077 (-) True G1786846
TU2045478 lncRNA downstream 419280 20346146 ~ 20346632 (-) True G1786834
TU2045456 lncRNA downstream 440977 20324712 ~ 20324935 (-) True G1786815
TU2046704 lncRNA upstream 321156 21098313 ~ 21122358 (-) True G1787982
TU2046732 lncRNA upstream 359386 21136543 ~ 21136749 (-) True G1788010
TU2046736 lncRNA upstream 361172 21138329 ~ 21139127 (-) True G1788013
TU2046737 lncRNA upstream 363901 21141058 ~ 21141545 (-) True G1788014
TU2046927 lncRNA upstream 613055 21390212 ~ 21395471 (-) True G1788199
XM_021579257.2 mRNA downstream 25958 20730910 ~ 20739954 (-) True LOC110501586
XM_021579256.2 mRNA downstream 26492 20730910 ~ 20739420 (-) False LOC110501586
XM_021579255.2 mRNA downstream 26514 20730910 ~ 20739398 (-) False LOC110501586
XM_036958954.1 mRNA downstream 26835 20730910 ~ 20739077 (-) False LOC110501586
XR_005038959.1 mRNA downstream 73598 20690516 ~ 20692314 (-) True LOC118943627
XM_021579259.2 mRNA upstream 365927 21143084 ~ 21295829 (-) False LOC110501587
XM_021579258.2 mRNA upstream 365927 21143084 ~ 21447200 (-) False LOC110501587
XM_036958955.1 mRNA upstream 365927 21143084 ~ 21447200 (-) False LOC110501587
XM_021579260.2 mRNA upstream 365927 21143084 ~ 21447203 (-) True LOC110501587
XM_021579261.2 mRNA upstream 795407 21572564 ~ 21590999 (-) True LOC110501588
TU2045833 other downstream 309929 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 419898 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 1106812 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 1444053 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 1586728 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 1013599 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 1640973 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 2387324 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 2655837 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 3549572 24326729 ~ 24327127 (-) True G1791405

Expression Profile