RNA id: XM_036958955.1


Basic Information

Item Value
RNA id XM_036958955.1
length 3620
RNA type mRNA
GC content 0.47
exon number 24
gene id LOC110501587
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21143084 ~ 21447203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGgatagggagagatagggagaggagaagCCAGTTGCGCGCGGTATACACGACTCTCGGGTGGTGAAAGTGTCAGTCGTCAAATAATCGGAGTCCACATATCCAACGGGGAGTTGCTTCATAGACGGTGCCTGGTTTATATTTTAATTTGGTCGTGTTTACCAGGTGTTTTACATTTTTTGGATAGGAACGTCTCTTAGGTTTCCAAGATGAACCAAACTGCCGGCGTTTCGCACCAATTGAAATACCAGTCTTCTGCGTCTTCGAAGGCTATGGCCAAGgACCTTGGTGCGGGAGCTCCACCTGACAGGAACTGGAAAGGAATTGCTATTGCTCTGCTGGTTATTTTGGGGGTCTGCTCTCTTATCACCATGTCTGTCATCCTCCTCACCCCAGcggACAGCCAAGCTGGCAGTGATACCAAACTCACAGTGGAAGATCTGTTCAAGCCTGAGTTTGTTGCCCACGACCCGGAGGCCAAATGGATCAACGACTCAGAAGTGATCTACAGGAATCGCGATGGCCACGTAATCAAGTTTAACATCCTCACCAATGAGACTGAAATTGTACTGACAAACACAACATTTGTCAATTTCAATGTTGCAAAGTACTCCGTTTCCCCGGACTTGAAATATGTGCTCTTTGCCTATGATGTTAAACAGATCTACATATTTGAGAACAATATTTACTACCAATCAGATGTGAAGAGCAACTCCCTCAGACTGACATCGTCTGGAAAGGAAGGGGTCATTTTCAATGGGATCGCTGACTGGCTGTACGAGGAGGAGATTCTCCAGTCACATATAGCACACTGGTGGTCACCGGATGGAGAGAGGTTGGCCTTCCTGGTCCTCAATGACACTCTGGTGCCCAATATGGCCCTTCCTCGCTTCACTGGCGCTTCATACCCCAAAGGAAAGCAATACCCCTACCCTAAGGCTGGCCAACCCAACCCCACAGTGAAGTTATATGTGGTGAATCTGTAcggaccgacacacacacaggagctcaCACCACCAGACAGCCTCAAACTAAGGGAGCACTATGTCGCCATGGTCAGTTGGATCAGTAAAACCAAGACGACGGTCAGGTGGATGAACCGTGCCCAGAATGTGTCCATCCTGACCGTATGTGAGACCACCACGGGGGCCTGTGTTAAGAGGCATGAGGAGGTCTCAGAGCTCTGGCTTTCAAAGCAGAACCAGGAACCAGTGTTCTCCAGGGATGGCAGCATATTCTTCCTGACAGTGCCCGTCAAGCAAGGCGGGCGTGGAGAGTTCCATCACATCGCCATGTTCACCACACAGTTCAGAGCAGATCAAAACGAGGTCCGCCATCTAACATCAGGAAACTGGGAAGTAACTAAGATCCTGGCCTATGATGAAAGCAATGACAACATATATTTTCTCAGCACTGAAGGCTCACCGCGAAGAAGACAGCTTTTCAGTGTGAAGACTGTCGGGTTGTTCCCTCGACACTGTCTGACGTGTGAGCTAAATAAGGCGCACTGTCTGTTCTTTAATGCTGAGATAAGCCCCAATGATAAGCATATCATCCTCCACTGTAAAGGTCCCGGAGCACCCACTGTGATCTTACACAGCCTCAATAATGCCAATTACTACATCCTTGAGAACAACTCTCTACTAAAGGCCGCTTTAAAGGTCAAGAGGATTCAGATGACGGATTTCAGAACAATCCAGATGGAACATTTTGATCTGCCTTTGAAGATCTCTTACCCACCAGACTTTTCTGAATCGCGTCACTATGGCTTGCTATTGATAGTCGATGGCTCCCCCGGTGGCCAGGCGGTGAGTGACCGTTTCGTCCTGGACTGGGACTCGGTTCTGGTCAGCTCGGATAACGTCATAGTGGCTCGTCTGGACGGCAGAGGGAGTGGCTTCCTGGGCCAGAGGGTTCTTCATGAAGTCCACCGGCGTTTGGGAACCGTAGAGGTGCAGGATCAAATCACAGCTGTGGAATACATGTTGACATTCCCGTACATTGATCGGACACGGATAGGAGTATTTGGGAGGGGTTATGGTGCCTATATTACATTAATGATGCTCAAATCAACTGACAGCCTGTTCAAATGTTCAGTAGCAATGTCCCCTGTCACGGACTGGAAACTATATGCATCAGCGTTTTCCGAGAGGTACCTTGGCATGCCATTACGGGACGACAGCAGATATCAGTTCTCCAGTGTGTTGCAGAACGTCCAGCCACTGAGGGAACAGACTCTGATGCTTGTCCACGGCACAGCAGATGCCAATGTTCACTTTCAGCATACTGCTGAGCTCATCAGGAACCTTGTGAAAGTTGGAGCAAACTACTCAATGCAGCTCTATCCAGATGAGGGTCATTTCCTGTCCCAGCGGAGTCGGCAGCACCTCTTCGCGTCGCTCACCAACTTCTACAGGGAGTGTCTCAGGGAAGAGATCCTACCACTGCccgatgatgatgaggaggaggaagaagagtagGAGTTATGATGTGTTGGGAACCTTCGGCAGGACTTTGGCAGGACTTCCTCTCTGTAAACATTTGCTGAAGCCTGCACTAAAGGCTGGTGGCTTTTGGACCAAGTGTTAAGACAGAGGTGGACAGTGAGAGTTGCTTATgcttctagtgtgtgtgtgtgtgtgtgtgtgtgtacattagaTAATTTGTGTTGGTTTGAGAAAGAGAGTTTGATAGTGCTTgtgcgtgtgtctgcgtgtgtacgtttgtgtgtgcatgtgttttcaTTCAGAGAACTTCCAAGGACACCTGTCAAAGACAATGGAGACGGGCATTGTCGAGACTACAAGCTGGAACTCTCACTAATCCAAAATGCCACTTCGATCACTTTCGGCAAAGCACATAGCAGACTGCCTCCATCATCGATGGCGGCCATTAGTGTTGCAACATCCACACTTGCAAGTGCATGGTTCTTTTCCCCTTGCAGCTTCACTAGTTTTGTTAGTCTTTGTTGTAGTAGTCATTGGAAAGAGACAAACACAGATGAAGTACCCTTTTCAATTCCTCCCCCTCAATATTATTTGTTCTTGTTGCACAAGGAAATGCTCCACTGCTCTTCAGAGACATACTGTAGGCAATGCAAGTTCACCATCACTGTGACGTTGTCCACGAATAAGTGTAATTCCTGCTGAATGCTCTCTCATTGTCAACCCCCACTGAAAAGAACAGTCCTTTGGGCACACTTAAACAATGGTCTTATGTAGACATGTCCAATGCCTTATGAAGTGCTTCATAAGACCATAAAACCACGTACTGGCATTCATAGCCATTCATTATTAGCAGCTTCATTACCAACCTGTGTCAGCTCAGTCCTTTGAGACGCAATATGACATAGTGCAGTTATAAGGTCAGGTCATAAACCAGTTATAACTCCAGTGAGTAGAGAGTGGTCACAAAGGCCATAACATGACATTGTGTAGGCCTAAGTAAGGGGTTTGCATGTCTACAGCAGTGTGtacatacatatattttttagatATGTCAGATCTCGTGGATAGGTTAGTCTATGGGAATGGAATGATTTGACCTGTATGTCTTGTACATTTTCCAGTTGATTTTGGTTTCGGTTTATTTTTCTTCCAAGGGTAGATTTTGTAATGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2046737 lncRNA downstream 1539 21141058 ~ 21141545 (-) True G1788014
TU2046736 lncRNA downstream 3957 21138329 ~ 21139127 (-) True G1788013
TU2046732 lncRNA downstream 6335 21136543 ~ 21136749 (-) True G1788010
TU2046704 lncRNA downstream 20726 21098313 ~ 21122358 (-) True G1787982
TU2045931 lncRNA downstream 610085 20524773 ~ 20532999 (-) True G1787259
TU2046980 lncRNA upstream 6214 21453414 ~ 21453619 (-) True G1788252
TU2046994 lncRNA upstream 29324 21476524 ~ 21476740 (-) True G1788266
TU2047005 lncRNA upstream 41921 21489121 ~ 21489349 (-) True G1788277
TU2047006 lncRNA upstream 42990 21490190 ~ 21490390 (-) True G1788278
TU2047240 lncRNA upstream 117134 21564334 ~ 21564604 (-) True G1788496
NM_001124521.3 mRNA downstream 365927 20765912 ~ 20777157 (-) True LOC100136257
XM_021579257.2 mRNA downstream 403130 20730910 ~ 20739954 (-) True LOC110501586
XM_021579256.2 mRNA downstream 403664 20730910 ~ 20739420 (-) False LOC110501586
XM_021579255.2 mRNA downstream 403686 20730910 ~ 20739398 (-) False LOC110501586
XM_036958954.1 mRNA downstream 404007 20730910 ~ 20739077 (-) False LOC110501586
XM_021579261.2 mRNA upstream 125364 21572564 ~ 21590999 (-) True LOC110501588
XM_021579266.2 mRNA upstream 261681 21708881 ~ 21766231 (-) True LOC110501591
XM_021579269.2 mRNA upstream 341228 21788428 ~ 21913721 (-) False LOC110501594
XM_021579271.2 mRNA upstream 341228 21788428 ~ 21913721 (-) False LOC110501594
XM_021579268.2 mRNA upstream 361110 21808310 ~ 21895607 (-) False LOC110501594
TU2045833 other downstream 687101 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 797070 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 1483984 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 1821225 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 1963900 19175567 ~ 19179184 (-) True LOC110501547
TU2047639 other upstream 343556 21790756 ~ 21820945 (-) True LOC110501594
TU2048419 other upstream 970930 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1717281 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1985794 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2879529 24326729 ~ 24327127 (-) True G1791405

Expression Profile