RNA id: XR_002470225.2


Basic Information

Item Value
RNA id XR_002470225.2
length 4454
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC110501594
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21788428 ~ 21913721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagagagggagagaaagagagggggcacTGAAGTGGAAGTATGAGTGAGCatcagagagaaggacagaaataGAGCGCTAAAGGAACGAATTGCAGAGggaggatcagagagagagagcaatggtgGTGCACATGGGTTTATGGTATTGTTGCAAGAGCCTTTTCTGTCATTTTCTGTGGACATGAACCTCACGTGGATTTTCTCAGACTCCCAGTGGATTTCCCTGCAATTCCTCCCTGGATCTAAACAGCTGTTGAAGACTTGAAGACCAAACCATGCCTTCTCTTCATTGTAGCTTCAACATGGGACCTTGACTGGGTTCCCTGGCTGGATTCTGACTACCACGGATACCCTtcacaattttttatttaactctaTCTTAGTCCAAATGAGATCAAAATACctatttttcaagggagacctgacGACGAAGGATGGCGCTATGTGGCACCTCCACTAAGCACCACCCCTCAGTGCATGCTCTGCAGTGAAGATTCCTCCATGTGCTATCTATACTGACGTCCCTAATCGTGGATAGCCACTGACAGGCCTGAGCGATCCGAAAGTCTAGCCGGAGAACAAACAACATCTGGGcgtggggagagaggacagggacgAGACTCAGCAAGGATATTAGCAGATGGTGTCACTACAACAACACTTTGTCAGTATGGAGGAGACTGTGAGGAGCCTGCTACAGAACCAGGACACACTGGAGGGCCCCAGCGTGGATCCACTGGACCTTATGAAAGCCTACAAGAACAAACTCCTGGAGGAGATGTGGAAACAGCAGAACAGTCTGGAAGGCCCAACACCCCCTTTGATAGATAGGAGGCCCAACTCTCCAGGATGCAGCAGTAGGGGACATGAGGAGGACTCCCACGAGGCCAAGCCCCTTCTAGAGCGACTACGGGCCCTGGCGGTGGAGAACTCTGCCTTGACGATGGAGAACGATAACCAGAGGAAGCAGTATGAACGTTGTCTGGATGAGGTGGCTAATCAGGTTGTTCAAGCACTCCTCACTCAAAAGGACCTAAAAGAGGAGTGTGTGAAGCTGAGGACACGCGTGTTTGACTTGGAGCAGCAGAACCGCATACTGAACGTTCTGTTCCAGCAGAGGGTCAAAATATCCAGCAACCCTGTCTCCCAGGAGGTCCAACGGAATGGGAAGGCCGGTGTTCCTGCAGTGAGGTGGCCCAGCCTGCTGAGTCTGACCTGTCCACACAGTAGCTGCAGTGGCAGTGAGGCCTCCTTATCCAGTGCCTGTAGTGAGTACTCCAGTGGCTCACATACTTGGGCAGAAGGACGCGGCTCCACCAAGCAGTCTGCAATAAATCGAGAGAAGAGGATGAGTGCAACTTATTGCTCTGTCTCAGCAGAGCAGCCGGACCTAAGCTGGAAAGAGGGCCACATTCTGAAGGGCCTAAAGAGGCTCCAAATGCGCAGCCCAGCTCCCCAGGAGCCATCTTCACTTGCCTCCACGTCACATTTCAAGAACTGCATGACCTCCAACGAGGGCATATACTCTCTAGGGGTCAAGTGTCATCCAATAGGGGTACTGCCCGCATTGGCAAAGGGAAAGCCTTTCAAGCCAGGAGCAGGAGTCAGTACCTTAATCTCTGACTCGGACGATGCAGATGATGAATCGCCTCAATCCCCAGTCAGGGAGTCTTGCTGCCCACCCATCAAAGACACTCATCATCTGGAAGGACAGCCTGCGTCTGAATTGGAAATGGCACAAGGGGAAAAGAGCTTTACGGACTACAACTCCCAAGAGGAGCCTGTAAGACTCGTAAGAAGTCCCAGCAACCCCCCCTCACCTATCAAAGACGTCTTCTTGCTCAAGGGTCCTACACTGAAGCCTGGACTTAGCCCAACAGCGACCCCTACCACTGTGAGTGGACTTGAGAATACAAACTGGATAGAAAAAGACAAGCAGTCTGCCTTTACAAACTGGAATGTTATGGACAGTTGCAATTTGAGGCCAGAGAGTGTTAAACAGCCACAAGAAAAAGTTACAGACAAACAActagagacaggggctagggaaGTGAGACAACCCATTCATCATTCAGCATCCAGAGCTCTGAGTTGGGTTAGTGAGGTCAGACAGCGCAGTGCTTCCATGGATACGAAGCATTACAGAGAGCCGAACAGCCAGGGTGAAATTGATACCAAGGACTACACCATTTTGGAGTCCCGACAGAGGAAAGCAAAGCCTAAGGCCTGCAACTCAGCAAGGAAGGCCTTTTTCCTCCGAAGCAAGAGTGCGGACGGAGGCCCAGACCAGGCCAAGCTACACCAGCCTCTACATCAGAAGCTGATAAAGGTCAATCAAAGGTCCAAGAACCACATGAACACTCCTGAGTCCAGTGGCCCTGGCACAAAGACTTACCTCAACAAGGCACCAGGTCCAGCAAAGGCATCAGTACAAATGTTTGAGAAAGGTAAGAATGCTACTGGTGCAAGAACTTCAGGGCCACTTGAGAATAGGGTACAGAGGTCCCCTTCTTCTTCACCTCAGAAACTGGTCAAGGTATTTAAGCCCCCTGGGCTGAATGATTACCCCAAGAGACCATCTAAAGTATCCCAACCAGTCTCCAAACTCCCATCAAGTGGAGCAAAAGCCCCCAACTCCAACAATTCAGCTTGCTTTCCACTCAAACAGAGACAGCAAGACCAGCACTCCGATCCACCTCGCAATGATATCACGTCCCTttctcctccacccccaccaggtCGGACCACCTCCCTACTAATACGACCTGATCATGACTCATTACCTCAGGCGCATAAGCCTGTGGTTCAGCCCCAAACCTCTAGCACTGTGAAGGCAACCACCAATAGCACCAAATCTCAGTCAGGTCATCATTCATCTATTTTACAAAAGCAAGCTCAAGCCCCCATCAAAATGCAAGACACTCATCATATGGATCACAAAATGGGCTCTCAGATGAAAAAGTATCCGAAACTGGTCCCTACCAAAGTTCACCATACCTTACCAACTTCTACCCCTATTCGAGAATCTAAGGAAACAGCCTATTCCCAATCCTCACTGAGCTGGACTGTGGCACAAGCTTCCCATCAGGAAAATAGTGCCCCCTTTGTGGTGCCAAACCAGGGCTGTTTACCTGTGTCCCAGCAAAGCAATGATGAGCTACAAAGTACAGAGCTCTTACCTCAGGCCTCAGCATCTCTTCTCTGCCATGGCATAGTTAGTAACTCTCAACATTCTATGACCAGGGTAGTGAAGTCATCCATTATTTTTGGCTCCAAAACCAATGAGTCAACCTCAAAGCCGGGCAACAACTCTACAGTTAACACTGCTACAAGGGGAGTGCAGACTTTTGAAAACCTTTACCAGGACACCTACACACGTCCAATGATGCACTGTGTCAATGCAGCTGTAGCCAAGGTCAATGCTAGGAGAAATCTCAAGACCCGCTGTAGCTCACTAGAGGAGCCTACACTCCCACCTACAGCAGCAGAGAATGGTGTAACTTTGGACTGGGGATTTGATGAAGAGGGCTGGCTATTCAAGCGCTCAGTCTCAGTCTCTACCCAGCCTCCTATCCACCCAGTTATggggatgaacggagcaaaggcTCGCAGTCAAAGCTTCGGAGCACGTTACATGGACAGACCAAACGTCAGCAGATCAGGAAAAGTCCGTTCTCACATCAAAACTAACTCAGGAAGCTCTTTGAACTCTCTTGGTGATGTATTTTGGGGCAGTATGAGTTGCTCCAACAGCTACCATTGTCCCATGAACAGATCCCACGTTAACAATTTCATGATTGAGGAAGGCTTACCACTACCTCCACATCTGGGGGCTTCCAGTGATCGATTTGATCTGAAACACAAGAGGTTAAACTCAACATCACATCTCCAGACTGAGATACAGCTCTCTAGCACCTTCTGTGAACCCATCCATGGGGAACCAGAAAGGCAGTCCATCATCGAGGAGAAGGTCATGATGGGAATCAAGGAGAATTTGCAGAAATCTCAGGAGCAGGAGAAGACAACTGAAACTAAGCAGAAATCCGTCTCATCCCTGGCAAACTGGTTCGGATTCCGTAAGAACAAGCTCCCAGCTCCGAGTGGCAAAAACGTAGATACTCaaaagggaaaggaggagaagaaggagccTAAGCTTGGATCTCTCTTGGGTGGGAAGCAGGCAAAGTCCGAcaaaaaggagaggaggaaaagtgAAGGTCATCGAATGGACAGacaaaaacacagaggATGAACCTCAGGACTGATAACGACAATGGAGCTGCATTAAAGAGCCCCGGTCAAGATCACGTGACCGGCTCTGGCTGCAAGATGCGAACATTGGACAGCGGCATTGGAACGTTCACCCTCCTTgattcctcctccttcctccacttCCTTCCCAAGTCCCCATCGGCCCGGGGTCACTCCCTCAGCCCACCCACTGTGCCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047641 lncRNA downstream 19520 21788858 ~ 21789151 (-) False LOC110501594
TU2047640 lncRNA downstream 20485 21787890 ~ 21788186 (-) True G1788859
TU2047635 lncRNA downstream 23046 21783215 ~ 21785625 (-) True G1788854
TU2047426 lncRNA downstream 27002 21781441 ~ 21781669 (-) True G1788664
TU2047423 lncRNA downstream 30449 21777792 ~ 21778222 (-) True G1788661
TU2047753 lncRNA upstream 27021 21940742 ~ 21941547 (-) True G1788964
TU2047770 lncRNA upstream 50901 21964622 ~ 21965058 (-) True G1788980
TU2047773 lncRNA upstream 53061 21966782 ~ 21967087 (-) True G1788981
TU2047775 lncRNA upstream 55445 21969166 ~ 21969530 (-) True hecw2a
TU2047780 lncRNA upstream 64665 21978386 ~ 21978618 (-) True G1788988
XM_021579266.2 mRNA downstream 42440 21708881 ~ 21766231 (-) True LOC110501591
XM_021579261.2 mRNA downstream 217672 21572564 ~ 21590999 (-) True LOC110501588
XM_021579260.2 mRNA downstream 361468 21143084 ~ 21447203 (-) True LOC110501587
XM_021579258.2 mRNA downstream 361471 21143084 ~ 21447200 (-) False LOC110501587
XM_036958958.1 mRNA upstream 9079 21922800 ~ 21936414 (-) False ftcdnl1
XM_021579274.2 mRNA upstream 9589 21923310 ~ 21929159 (-) True ftcdnl1
XM_021579275.2 mRNA upstream 22793 21936514 ~ 21957694 (-) False stk17b
XM_021579276.2 mRNA upstream 22793 21936514 ~ 21957694 (-) False stk17b
XM_021579277.2 mRNA upstream 22793 21936514 ~ 21957704 (-) True stk17b
TU2045833 other downstream 1352688 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1462657 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2149571 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2486812 19321188 ~ 19321859 (-) True G1785753
TU2044262 other downstream 2629487 19175567 ~ 19179184 (-) True LOC110501547
TU2048419 other upstream 504409 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1250760 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1519273 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2413008 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2934870 24848591 ~ 24849752 (-) True G1792342

Expression Profile