RNA id: TCONS_00006009


Basic Information

Item Value
RNA id TCONS_00006009
length 2050
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id XLOC_002625
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10712178 ~ 10714227 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgatctgcttgatgactcgactgatcatcacggctgcttcgcgctccagtctctgtgtatctgtgttttcaCTGGGTGAAGAGCTGTAAAAAATGAATCTTGAGGCttgtaattttcatttaaaaaaatgatgtggtcattaaaaataatgtgcatattttcttaaaaaaatcgaTATTctggatttattataaaatattgagaGAATGTCGCTAATATAACTAGGATTTAAATTTCACTTATTTGTTTAAGCAAACCAGTGCAATTATTAGGCTTACTTTGAGAGACCagttaagctaaaaaaaattgaGGAAAGATGGCTTCacctttattttaagaaaatttacACAATTTTGTGGATTTAATTGAGATGTTTGCATTTGAATCTCAACAACGGCAGTGATCAGACGACATTTTGAAGGAGCAGATTAACATCGAGCATGTTAAGAGGTAagcattaacattttattttattatggagCAGTTTATCATTTTATTGTCTTAAATAGCCTAAGCTCTTTCAAGAAAGACAAATGCTGTTCAAGCTTGTTCAGGAGCCATATGTTGTTTTTGCCATATGATGTGTTAAGGGATACACGGGTATTTTTAACCACCCATTCCTATTTGAAATTGATTTACATTAATGTTCATTCTGAATTATATAATGAAATTGAACAAATTATTTTCATTGTAATATTTACAGCAGTGATCAGGCAACAGTTAAGCAGGGTGGGCGAACAACAGTGAGCTTGTTAAGTGGTAAGTCTAAGCTATAGCTAATCATGGGgttttccttttacagcattgatgatgtaatgtaatgaactgtgtttatatataatactgtatataaatactaACATGTGTTTGCTTAATttttcagattaataaagaaaatgttcacagtattttcccACTGAAGAGGAGCGGTTTATTCGGGCAGATTTTGATAAAGAGAATGGGTGCCAAACAGCaggtatttttaataatgttatttgtgtattattattattattattattattattattattaggcaataTTACTAATTTCTACACTTTTTTGCATCAGACCTCACAATAAATCAAGGAGGAGATGAGAGATGTCGTCCTCTGTTGCTGGTCTATCTCTATGAATAAGAGGAGGAGCTCATCCATGAGTGCAATGTAAGTGTCTCAAACAGTTTTAGATATTAATGGTCTTCAGAAAActgcattttatatttttgcatgtttacaaaaaacaaaaatatagctcAAGCACTACATTGTTGAATGCACTATTCTTTGTATAAACatggtttgtttttataaatttatatttttgtacactagtatacattttaaaaagaccCTGTCCATTATAAGTCAAAATACTTGTGCACTTGTGTCAGTCAGCAAGGTCTATTCAAACATTTTGAAGAATTACTGTTCACAGAGATACAAAGAAATGGtttgtttccttaatatatttccttaatgtgtttttgtaaaccttaaacatttgaaatgtacaactgcataatttaataataataaacttaatgtttattttacagtgtgggaTTGCACAGAGAATTGCTGTCTGCTAGAGGAATGACCAACCATGAGGACTTCTGCCTTGTCTTGGAGGATGAGTGATTCATGACTCATGGCTAGCTTAAAAAATCTAGAATTGCTGAACTGGATTTATacaaatattccccaaattaaaatcacttacaaagaAACATATATTTCTGACACAATTCACTGCTACAACCTTTTGGGGAATTTTCActgcattgattgattgattgtgttgCTAATATTTGAGATGCAGCTTTTATACTGGTTTTATATGTTATGCAATACACACATTCTGTCAGATTTTGTCTAAAATGTGAATACTCCTACAAATGAAAGttgacagaacattttttttctatgGCATGGATAAAGGAATTTTATCAGAGATTAACATTGCTGTAAACTTTATATAGATTTGTTTAAcatattgtaccatttttttgAATCGGTGGAACGTGTAATAAAATGATATTTGgcaaaaa

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0007498 mesoderm development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0043034 costamere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004881 lncRNA downstream 133346 10564261 ~ 10578832 (-) False XLOC_002624
TCONS_00006008 lncRNA downstream 381047 10327167 ~ 10331131 (-) False XLOC_002623
TCONS_00006007 lncRNA downstream 381558 10324509 ~ 10330620 (-) False XLOC_002623
TCONS_00006006 lncRNA downstream 423495 10287455 ~ 10288683 (-) True XLOC_002621
TCONS_00006005 lncRNA downstream 433645 10273729 ~ 10278533 (-) True XLOC_002622
TCONS_00006010 lncRNA upstream 70107 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00004895 lncRNA upstream 617742 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006011 lncRNA upstream 1181146 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00006012 lncRNA upstream 2584612 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006013 lncRNA upstream 4316779 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00004882 mRNA downstream 105060 10564447 ~ 10607118 (-) True XLOC_002624
TCONS_00004875 mRNA downstream 693384 9835679 ~ 10018794 (-) False XLOC_002620
TCONS_00004877 mRNA downstream 694058 9884403 ~ 10018120 (-) False XLOC_002620
TCONS_00004876 mRNA downstream 695830 9837292 ~ 10016348 (-) False XLOC_002620
TCONS_00004874 mRNA downstream 750690 9834896 ~ 9961488 (-) False XLOC_002620
TCONS_00004884 mRNA upstream 146532 10860759 ~ 10863936 (-) False XLOC_002627
TCONS_00004885 mRNA upstream 146532 10860759 ~ 10864331 (-) True XLOC_002627
TCONS_00004886 mRNA upstream 165310 10879537 ~ 10969444 (-) False XLOC_002628
TCONS_00004887 mRNA upstream 166438 10880665 ~ 10969596 (-) True XLOC_002628
TCONS_00004888 mRNA upstream 286667 11000894 ~ 11012000 (-) True XLOC_002629
TCONS_00004879 other downstream 379751 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 382624 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 1173852 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 1570499 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 1622542 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004903 other upstream 1047153 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 2590838 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 2892800 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 2897906 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 3217342 13931569 ~ 13931696 (-) True XLOC_002648

Expression Profile

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