RNA id: XM_021579275.2


Basic Information

Item Value
RNA id XM_021579275.2
length 4213
RNA type mRNA
GC content 0.44
exon number 7
gene id stk17b
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21936514 ~ 21957704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACAAAATGTCAAAACCGTCCGAACGAGATTGGTCGCAATCTAAATTTGAAGACGTGTTGCTCACATCAACGGGAGGAAGGATTTTATCCAGATGCTAGCTAGGCACTAAACTCGCTTATTAATGAACACAGTCAATAGGGAAAGTTTAAGTTGTTTGTCAATCAACCCGATAAGTGACAATTCGTGATGTATAGTTAGCTGTCTATTAAAGAAAAGTAAAAAGGAGCTAGTACGGTTGTTTAGAtggatagctagctagcgaacGGTAGCCGTTGTTCTTCGTGACCTGTCTTTCAAGTAACTAACCTGCTGTTCTACTACTAACTAGTTATTATCCACAGCTAAAGCATCTcaaactagctagctattagctAGTAACTTAGTTAACGTTACTATGTAGCTATCCAGCTAATAGTTACAACATTGGCTAACTAAATAACTTTCAGCTAACTGGTTTAGCACTGGCTAAACACATTAGCTACTAGCTGGCTAGATAGTCTACGGCCTTGATTCGGCTTGACAGGTGCTAATTTATTGCCACAGTGAAGTCCGGCTAACAACAACGATGTCTCGCAGGCGGATTGACGGCCGCAATGGACCGACTGGGCTATTTGGAGAAATTCAAACCCATATCAATACGGAACCGATGGACAGTGTTTATGACATCACTGGCGAGTTGGGCAGGGGGAAATTTGCGGTGGTGAAGCGGTGCGTGGAGAGGTCCACAGGGAAGGTGTTTGCCGCCAAGTTCCTTCGGAAGCGGCGGCGGGGCCGAGACTGCCGGGCCGAGGTGGTGCACGAGATGGGTGTGCTGGAGGCGGCCCGCAACAACCCTCGCGTGGTTAACCTGCACGCTGCCTATGAGACAGACCACGACATCATCCTGCTGCTGGAATATGCGGCGGGGGGTGAGATCTTTGACCACTGTGACTGTGATGAGCTGCTCCCAGAGGGCCAAATCACACGGCTGATCAGACAGACGCTGGAGGGCGtccacctcctccaccagacCAGCGTGGTGCACCTGGACCTCAAGcCCCAGAACATCCTTCTAACCAGCCTGGCACCGCTGGGGGACATAAAGATTGTGGACTTTGGCCTGGCACGCAAACTGGGCATGGTCGGAGAGCTTCGAGAGATCTTGGGCACGCCCGAGTACGTGGCTCCAGAGATCCTGAACTATGAGCCTATTACAACGGCAACTGACTTGTGGAGTGTCGGAGTGATTGCCTACATGCTGGTGACGGGTGAGTCTCCATTTGCAGGGGATGACAAGCAGGAGACGTACCTGAACGTGTCCCAGGTCAACGTGGACTATAGCCAAGAGGCCTTCTCCAGGGTGTCGGAGCTCGCTGTCGACTTCATCCGCAAGCTGCTGGTCAAAACTCCAGAGGACCGGCCCAGTGCAGCCGACTGCATGACCCACCCCTGGCTGTGGCAGCAGCATCAATACCCAAGTACCGAGCCTGTCCTGCCACAAACCCCCCGTGAGAGGAGCAGCGGTACCAAGTGGGCTGCCCCAGCCGAGGACCCAGAGGACAAGGAGAACTTCACCTTGGACTCACCCCACACCCAGGCCAAGAGGTTTCGCTTTGAGGAGGAGACACCTGCCACCACCAATGGTGGAGACGGGGACTTCTGAGGGGGAAAGAGCGACTCAGGCGCACCCCTCCCACAAGCTCCTATTTTGCTTTTATTGGTTTTATGCAGCAAGGAACCTGCCGGCAAGTGTCACCTACCCAAGAGcgcttctgttctgttctactgctCGCCAGTATCCAAGAGCGCCCAGCCAAACCAAAGATAGCCAGCTTCCTTTGTGATCTAACGTCAATTTGTCACTGTTTCTGTGTAGTTCGTGTTTCTAAATAATGCATTGATTTAAGATTAGTATTCTATTTTATTGTGAGCTGATTTGGTCATTTCTAGTGTCTTTGTTTTGTCAGGTATATTTTGTCCCTGAATTTAAAGAATGAGGCCAGATATATCTCAAGGGAAATTTATGCAATACTGTTTTGCCACAAGTAACTTTTAAAGGAGACATTTAAATAGTCAACAAATTATTACTTGACCATTTTTGCCAGGCCAGTAAGTGGTCGTCAGTGTTCTTAGTATTTTGTGCTAAAATCATTCGACAGAACACTGAACTGTGCAGATATGGGCTAAATCAGACTTTGAGGAAGTGAAAGTAAAGTACGTCCTCACACTATGTCCTTGTTTGCCTGACCCAAGCTGTACATTACCTCCCTACTGTCAAACAAGCTTCAGGCCATGGCTTGCGCACATTATATTCTGTGACATTGTGACATTCCCTTATCTTGCTCTCCAGCACGCCACATCTCAAAGCACAGTATGATGTCATCTTAGACAGGTTGTCTATGCACAGTACCAAGCCCTGGCCTGCATAATTAGTAAGCCAGCAAGTCACACTGGTGTCTGTCTATAACATTTACAGTTTACTGTTAACCCCAACTCTTCCTCTGATTTACAATTCCACAGTAATAGAGATTTAAGAGGGTTCTGTAAAAAGGTGACTCATGGACAGTAAACACCACACCCCACCCATGCTTACTCGAATGTCTTTCTTCAAATGTTTTCAGTTCCTCTTGAGTCATTTGCTTAGGGGAACTGTGACTGAAGCATTTAACTATTTATCATCTGGGTATTTAATTTGCTTACTCAACTGGAAAAAGTTGTTTTGCATTACATGTTATTTTTGTGTAACTTGAACACAATGTATTTCCTGATATTTACTGAAGTAATTTAATCTGCATTCCTTTAATTGGTATTAAAAAGCTACTGTGGTTTTTTTTTATGGCTAGGAAGCCTTAAGTTTAATGGGAGTCGGGTAGATTTGGGAATCATAACAGATTGTCTGTGTATGAAGGTGAGTTTATTCAGTCTTACTCCTCTGTTCATTCCATTTCCTCATCTCAGGGCAAATTACCATTCACTTTGGTCGTAACTACCGTGTGCCTCTTTATATTTGCTCTTTAAATAAGTTTTATATTCTAATCTGATTCTCAATATATTTATGTAATGGGATGGTGTTTTGTTTATATTTAGATGTACATATGTGTGTGCTTTATTTAACTGGATTCAAATGGGTTTATGAAGATACGGGTTGTATGGGATAGTATTGATGGCACTGCTTAACAAAAAGCTGTTTTGGTAAGGTGACATGAAATTGAAATATGCTTTGGTGGTGAATGTGGGATTTCCATGAAAGGTTTGGAAAAGTGATTAGAGATGGATTTAAAAGAGAAAAGATGGTTATGAGGATAGGGTATGACATTGAGATGGTTACAGAGAATGAGAACACATTGATTACGGAAGTGATGTATGTAAAGGTTTCGACTGAGATATTTGTACAGTTTTACCAGCAGAGCACTTCCATGTAGAAAATGAAAGTGCTCTTTTGTTGTTGTTCCCCATccatttgtgaatttatgaaagaATAACCCACCCTGAAGAATTTTTGTGAACCCTAACTGCCAGCAGACCTCAGCTGAACATGTCACTTTGTTCAAGGAGGTGCAAAGACCACATATCCTTGTTTGTTGTGGTCCTCAAGGTTTCCCAGAGATGTCACTGCCCTGGCACACACAATAGCCTTTGTCTTCGAGAGGGCTGTCTCCAGTCACGGCCATGCTCTCATTGTATGCTGTCATCCTAAAGGAGAACTGGAACACCAATACGTCATTAATGAGTGGTTCAGTAGTCAGTACTGTCCTCCGTTTAAAGACAGACACTTAAATGAAAAGCAGACGTCCGAGGCACTGCTGACACCAATCGGCACAAAGTGGACTTGTACAACTTGATTATATTTGTAAGATCTCCACTGCTGATTTCATTTTGTATGGCTGTCTGAATTTACTTTTACATACAGATACTAGTCAAGTGACCTGTGTGTTCTCTGGGGGCAAAGGTGACCAGTTTGCACTTCACATTCCTGTGGTGAGATCTTCTCCCACTTTACCAGGGTAATACTGAAGGAAACATCTGAGTCAAACTCATACCAGTTAGAAGCACAAGCAATAACCTTCAGACCGATGTTTATTTCACATTTGATAGATTTGTgggtatattacatttgtttttagaATGGATAATTTCAAATCCCCATTTGTATCTTCTGATCAACATCAATCTAATATTTAGGTGTCATCAGCAAACAAGAATGCTCATTAAAGATGATAGAAAACCTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047637 lncRNA downstream 38386 21897596 ~ 21898128 (-) True G1788856
TU2047641 lncRNA downstream 147363 21788858 ~ 21789151 (-) False LOC110501594
TU2047640 lncRNA downstream 148328 21787890 ~ 21788186 (-) True G1788859
TU2047635 lncRNA downstream 150889 21783215 ~ 21785625 (-) True G1788854
TU2047426 lncRNA downstream 154845 21781441 ~ 21781669 (-) True G1788664
TU2047770 lncRNA upstream 6928 21964622 ~ 21965058 (-) True G1788980
TU2047773 lncRNA upstream 9088 21966782 ~ 21967087 (-) True G1788981
TU2047775 lncRNA upstream 11472 21969166 ~ 21969530 (-) True hecw2a
TU2047780 lncRNA upstream 20692 21978386 ~ 21978618 (-) True G1788988
TU2047782 lncRNA upstream 23967 21981661 ~ 21981879 (-) True G1788990
XM_036958958.1 mRNA downstream 100 21922800 ~ 21936414 (-) False ftcdnl1
XM_021579274.2 mRNA downstream 7355 21923310 ~ 21929159 (-) True ftcdnl1
XM_021579269.2 mRNA downstream 22793 21788428 ~ 21913721 (-) False LOC110501594
XM_021579278.2 mRNA upstream 11458 21969152 ~ 22021354 (-) False hecw2a
XM_021579280.2 mRNA upstream 11458 21969152 ~ 22021354 (-) False hecw2a
XR_005038799.1 mRNA upstream 15343 21973037 ~ 22021354 (-) False hecw2a
XM_036958960.1 mRNA upstream 281484 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 281484 22239178 ~ 22636505 (-) False LOC110502069
TU2047639 other downstream 115569 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1480531 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1590500 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2277414 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2614655 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 460436 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1206787 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1475300 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2369035 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2890897 24848591 ~ 24849752 (-) True G1792342

Expression Profile