RNA id: XM_021579280.2


Basic Information

Item Value
RNA id XM_021579280.2
length 7192
RNA type mRNA
GC content 0.52
exon number 30
gene id hecw2a
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21969152 ~ 22021354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATACACAGCTCTGCAGGCTGGGTCTATCTCCTTTAAGTCACCGCCCATTTCAACAGAGGAGGCACGGTTTACGCATCAGCCACCATGCGTCCCTCACTTGCCACAGCGGTCCTTCCAAGGACCCGTAACCATCCCCACACGGCCCACCCCCACAATGCACACGGATTGTCCGGACACTTGGGACGGGAGCACCTGTCAGCGCCTCGGAGGCGCAGCCCGCACCTGCGACACACACTCAGCCCGGAGAACCTTCGGAGCCTGGCAGAGCGCAGTGGCGCCGCCGGGGACATGGCTTCCGTGGTGAGTAGCCCCATTGGCCTCCCGAGGGCCAACAGTGACACGGACCTGGTGACGTCGCAGAGCCGCTCGTCGCTGACGGCGTCCACGCTGGAGTTCACGCTGGGTATGGGTGAGAACCTGGTCATCTCCTGGGACATCAAGGAGGAGGTGGATGCCACCGACTGGATTGGCCTCTACCACATCGATGAGACCAGCCCGTCTAATGTGTGGGACTGTAAGAATCGCGGGGTGAATGGGACACAGAGGGGTCAGATTGTCTGGAGACTGGAGCCTGGTCCTTACTTCATGGACGCTGAGACCAAGATCTGCTTCAAGTACTACCACGGTGTCAGTGGAGCCCTGAGAGCAACCACCCCCTGCATCACTGTGAAGAATCCTGgagtcctgggAGAAGGTCAAAGTGAGGGGCAGTCATCCACAGATCATCCTCGCAAACTAATCAGCTTTACTTTAACAGATATGCGTGCGGTGGGGCTGAAGAAGGGAATGTTCTTCAACCCGGATCCCTACCTGAAGATGTCCATCCACCCTGGGAAGAGGAGCGGCTTCCCCACCTTCAGCCACCATGGACAGGAGAGACGCTCCGCCATCATCGCCAACACCACCAACCCTAAGTGGCATGGAGAGaaATACACTTTCGTAGCACTGATGACAGACATTCTGAACATCGAGGTGAAGGACAAGTTTGCCAAAAGTCGACCAATCATCAAGCGCTTCCTTGGTCAGCTGACCATTCCTGTCCAGAGGCTGATTGAGAAGATACCTGGTGTCCAGCCTCTGAGCTTCTCTCTGTGTCGACGGTTGCCCACTGAGCATGTGAGTGGCCAGATGCAGTTCAAAGTGGAGCTTACATCCACTGGACCTGACGGGGCCTCACTAGACTTTATCATCGGTGTGCCCAATAATGGGGCCCCGGGGACTCCGTCAGATGACGAGGATCTTCCCCACCCACTCCCAGGGGTGGTCACTGGAGGCCCCTCCCCTACTGGCTCTCTGGGCTCACAGAGGTCCTGGGAAGGTGGGGCCACAGCTTATCCAGTCCCAGACTACAGGGACTTCAGCGGTACAGAGGGCGGAACCACAGAGGGCGAATCCTACTCTGGCCCTCAACGGCTGCAGAGATCCCTAAGTGAAGGCCTGGATGCCATCGAGGCCCCCAAGGGTCCCGGAGAGAGGCCCCTCGGCGCTGCCTCCCCGAAGCTGCGGTCTAGCTTTCCCACTCACACACGTCTCAGCGCCAtgctgcacattgactcggaCGAAGAAGAGGAGCGCTCGGGGTCCACTGACATCTACCCGGTGCCCGGGTCCCCCCTGCTGCTCAACGGCGGCCATGAAGAAGATCTCTTCCCAGAGCTACAACAAGACTCTGACACTGAGCAGCCTCAGCCCAGGGTGGAGGGTGATGAACAGGAGGGGGTAAAGGGGGAAGAATGTGCCACTGGTGGTGAATCTTATGTGGCCCCTGAGTTAGACCTGGCCCTCGACTTGGAAGACGCCTCCGAGCCTGATGTTTTCTCAGAGGTGGAGGAAGTTCCTTTCTTCTCAGAGGTGCTGTCCCAGAGTATTTTGACTGAGGTCCTGGAGGGGCCAGAAGAGGGCCAGGGGCCTGCTGACGACCCCTCGTCAGAGATTGACTCATGCTCCATGGCAACAGCCCCACAGACAGTCTTCTCTTCCTCAGAGAGTTGCCCAATCACAATGTCCACAGCTCAGGAGGCGGATGCAGGGGCAGAAGCTGCCATTGACCCAGGAGGAGATACCATCACCGACAACTCACCCACCAGTCAGCATGTAGACGATGTGGAAGACGAGCAGACGCCAGCCAATGAGGTTGAAGGAGATGCTCCATCAGCCAATGAGCTGGAGCCAGGAGAGGAGATAAGTGAGCTTAGGCGGAGCTTGCAGGCATCTGGGGGGGTGTCCCAGGATGAGGTGGGGGAGGAGCCAAGGCCAGCGGGAGATGCAGGAACTGTGGATTCAGATGCAGTTGCCACGGAGACGGATGGAGAGGACGGTGCTCAAGTGAACGGTCACCCCGTTCACTCGCTCCCCACAGTGCGCCATGACATCCACCGATACCAACGAGTGGACGAACCCTTACCTCCTAACTGGGAGGCGAGGATCGATAGTCACGGTCGTATTTTCTTTGTGGATCATGTGAACCGGACCACCACGTGGCAGCGCCCCACCGGACCACCCGCCCCCCAGGGCCTGACCCGCTCCAACTCCATCCAACAGATGGAGCAGCTCAACCGCAGGTATCAGAGCATAAGGAGGACAATGACCAGCGAGAGGTCCGAGGAGAACACAGTTGACCTCCCGCCAGAGCTCACAGAGAGTGACCTTCTACCCCAGACCATCCCTGAGTACAGGAGAGAGAGTGCGGTGGGTCACCCCAGCTCCCGGTCGcgtctctctctgctgctccaGTCCCCCAGCGCAAAGTTCCTGTGCAGCCCAGACTTCTTCACCATGCTGCATTCTAACCCTagTGCCTACCGCATGTTTACGAGCAACAATTGCCTGAAGCACATGATCAGTAAGGTGCGTCGGGACGCCCACCACTATGAGCGCTACCAGCACAACAGGGAcctggtggcctttctcaatatgTTCACCAACAAACAGCTGGAGCTACCCAGGGGCTGGGAGATGAAGCACGACCAGTCCGGCAAGAGTGCACGTTCCACTGGCCTGTTGACCCACCGCCAGCACCTCAGCCGCCAACGCAGCCACAGCGCAGGCGAGGTGGTAGATGACACGCGACACTCCAACCCACCTGTCATGCCCCGCCCCTCCAGCACCTTCAGTGGGTCCACTCGCAATCAATACCAGGACCTCGTGCCTGTAGCCTACAATGACAAGATTGTGGCATTTCTACGGCAACCCAACATCATTGAGATCCTGCAAGAGAGGCAACCAGAACTCGTCAGGAACCACTCACTCAAGGAAAGGTTACAGTTCATTCGCAGCGAGGGTGTTTCTGGGCTTGCTCGTCTCTCTAGCGATGCTGATCTAGTCATTTTGCTCAGCCTGTTTGACGAGGAGGTCATGTCCTATGTGCCACCTGCTGCCTTACTGCACCCTAGCTACTGCTCCTCCCCTCAAAGCTCccctgGTACTCAGAGAGCTAATGCACGTGCCCCTGCCCCGTACAAACGTGACTTTGAGGCCAAACTGAGAAACTTCTATCGCAAGCTGGAGACAAAGGGCTATGGCCAGGGACCTGGGAAAGTCAAATTGATCGTTCGTAGAGATCACCTGTTGGAGGATGCCTTCAATCAGATCATGTGCTACTCCCGCAAAGACCTGCAGAGGAGTAAGCTGTATGTCAGCTTTGTGGGAGAGGAAGGGCTGGACTACAGCGGCCCTTCGAGGGAGTTCTTCTTCTTGGTGTCAAGGGAGTTGTTTAACCCTTACTACGGTCTGTTTGAGTACTCTGCCAACGACACCTACACTGTGCAGATCAGCCCCATGTCTGCCTTCGTGGACAACCATCACGAGTGGTTTCGTTTCAGTGGGCGTATCCTGGGCCTGGCTCTGATCCACCAGTATCTGTTGGATGCCTTCTTTACCCGCCCGTTCTACAAGGGCCTGCTGCGTATCCCATGTGACCTGAGTGACCTGGAGTTCCTGGACGAGGAGTTCCACCAGAGTTTACAGTGGATGAAGGACAATGACATCGAGGACATGCTGGACCTCACCTTCACCGTCAACGAGGAGGTCTTCGGGCAGatcacagagagagagctgaagcCAGGCGGTGCAGGTGTTCCAGTGTCAGAGAAGAATAAGAAGGAGTACATCGAGCGCATGGTTAAGTGGCGCATTGAAAGGGGTGTGGCTCAGCAGACTGAGAGCCTGGTGCGAGGCTTCTATGAGGTGGTGGACGTGAGGCTGGTGTCTGTGTTTGATGCCAGAGAGCTGGAGTTGGTGATTGCTGGCACTGCAGAGATCGACCTGGCCGACTGGAGAAACAACACAGAGTACAGAGGAGGTTACCATGACAACCACATAGTCATTCGCTGGTTCTGGGCAGCAGTGGAGAGGTTCAACAATGAGCAGAGACTCCGACTGCTGCAGTTTGTGACGGGCACCTCCAGTATTCCCTATGAGGGCTTTGCCTCCCTCAGAGGTAGCAATGGACCACGAAGGTTCTGTGTGGAGAAGTGGGGTAAAATAACCTCCTTACCCAGGGCTCACACATGCTTTAACCGTCTGGACCTCCCGCCGTACCCTTCTTTCTCCATGCTCTATGAGAAGATGCTGACAGCCGTAGAGGAAACCAGCACCTTTGGCCTGGAGTAAACTCTCCAAAATGGCTGCCACAGCCAGGGGTCGAATTGGGAAAGAACAATGGTGGAGAGGAAATCCTGTCACCGTAGCTTGAGGCGAGACAGTACTCACAGTACACAATGGAAACTGAATAGACATCTACCAGAAATTATCATTTTGGAGAAGCAACAGAACTTTTGGGGACAATTTCACCACCAAGACAATCCcaatttgcccccccccccccccctccggctTGGCTATACCTCGCGCCTCCATGATCCCACACTTCCTGGAATCACGTTACTGTTCCATTACCTGCACTGATGCCCTCCATTTGATTCCTGTGTACAACAACCACACTTGTGCTTTCTCTTATCTGTTTATTGGCCTTGGTTACTGTATCTCCTTTTTCCTACAGGGGCTCAGCCTGCCCTTCAAGTCCAGAGACACCTCTTCCTAATACCCTATGCTTCCTCCTGGATTGACCCCCTGTTCTGGACCTCGGAACTGTGTCTTTCTACTCTGGGACTGGAGACTACGTACACTATAATACATAATTTGACTAATTCCTTGTCttcaaacacacactcattcactctcACACACTTTCAAGATGACTCTCATGATTAATTTCTGAGGGGATTAAATTGCATGTCACAGCTCCTAAGGTGCACCAAAGGCATTGACTCACTCCAAAACACATTGTACTTGTCTTCTTATGCTAGACTACATGAGCAAGGCTCTAAAATTGGCACACACTAACTCACGATAACAAATACAATTGTAGCGTCACTCTTTTTCAAAATAAATGAGATGCACTTTCTCATACACATATGTAGctccacacacacagtgagacattGCCTAACATGGCTCTATTTCTCACTAATGATATTGCCTCCCATCCACAACTGATGAATGTATCACATAAAAGACTGAATGTATGAAACTTCAGCACCTCTGGCTTGCTGTAGTGGGAGGAGGAGCCTTTGCAGCCAAAGACAAATAAACACCAGGAAGTGGATCACCTAAAATTTGTTGAATATGGAAGCCAAGGCTGAAAGTGGCACCGGACACGTGCCTTGTTATGACAGACACTTTCACTCAGTGTTTTGAGGAGGGTTGGTTGGGGACCCGATAGTGGGGCGCACCCATTTCTTCCTCTTGGCTCACAGCCGAAAAGTTGTAACGAGAGACTTTGTAATGTTTATTTGGTCGGTCAAAAGAACATTCAAATGGCTAGGTGTGTTACACACAACAAAAACAGAGCTACAACTCTTAATTGTATTCTATAATAGTTCCAGGATACAAACACGAGGGCAGCACATGATATGGTACTTACTTCAGTATCGTACACACAGCTATGGAAGCATATATAAGCTCGGGACATACACTACACACCTACACAGATGCTTATGATCTCTTGAAAGCAAGTGTTCATCCTGGTTTTGGACTTCTCAGTGCATATCCCCTACCCAACGGACTCATTCAGACACAGACGCACACGTGTTCACAGACACACCCTTTTTATGTGTGTACGCATGATTACAACTACTGTACAGAGGTCTGTGCGAGCTAGACAGACCACTCGGGCTGGAAGCCCCACTGTGATGCATTGTGGAGGAAGCCTTCATATCTCAGCCTGGCTTGAAACTGCATGCAAGGTCCATCTCAGCAACTCTGTGAGCTGCACTGAGCCTGGGACCCCTAGATGGTGTTGTGTTATATCTCGATATTTGCATGCAGAAATAGTGCAACACAAGTCTGTCCTTAATAACTTTTGCATGAGGATATCGCTATCGATGTTGAGAAAAGGGCGGGAGGAGCCGGATAAGAACTGTAGGGTATGCTGCTATAATGCGTTATAAATGTGTCCTTGATGAGGTGGACGCGGTCAAATAAATATTTAGTTTTTGTGCCACATTGTTTATGGCTTCACAATTGTGAAATGTTATAAGCTTTATGTTTGTTTATATGAAGGGTTATGACTAATGTTAACGAAGTACTATGGCAACACACTTTAAGGGAATTGTTTTTGTTACATTCATGAGATCACCTGTCTTGATGataggtcagaggttagaggtcatggTTCATGGCTACACAGAAAACCACACGGTGTGTGCTGGTCTTGTATGTCTCATCCTTGTGTACATGTATGTCTGCACCtgttgtgggtgtgtgtaaatatattttttgcacTGAATGTACCAAAGGTTTGGGGCTTGCATAGTCAACCATGTCTCCCTAATTTTGTCAGGTTGACAGAATTAGGAATGACCCCAGCCTCGGCCACACATCCCCTTGAGTTTAGAGGGGCAGTTTCATGGCATGCCCAGTAACCATTCACAACTGTTTTTAAATCATTTCTGCCAATCAATACATTTTCCACGCTAAGGATTTTTCTTCTGCTGCAAATGTCCAAATAAGAATAAAGTCAGTTTGCTCCTCACCCAATGAGGACCAAGCTCACCGCCACCACCACTCCCCATGGCTGATCAATTACCAATAGGATTGGACATCTGTGTCAGAACTACTCTATGCAAAAGCTCCTGTATCTCTCCATTTCACCACCATTATTGTATTAAAAGACAATGACAAATGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2047773 lncRNA downstream 2065 21966782 ~ 21967087 (-) True G1788981
TU2047770 lncRNA downstream 4094 21964622 ~ 21965058 (-) True G1788980
TU2047753 lncRNA downstream 27605 21940742 ~ 21941547 (-) True G1788964
TU2047637 lncRNA downstream 71024 21897596 ~ 21898128 (-) True G1788856
TU2047641 lncRNA downstream 180001 21788858 ~ 21789151 (-) False LOC110501594
TU2047839 lncRNA upstream 62281 22083635 ~ 22091952 (-) True G1789047
TU2047856 lncRNA upstream 115443 22136797 ~ 22137042 (-) True G1789062
TU2047860 lncRNA upstream 117214 22138568 ~ 22144965 (-) True G1789066
TU2047868 lncRNA upstream 137467 22158821 ~ 22164293 (-) False G1789072
TU2047869 lncRNA upstream 137467 22158821 ~ 22164963 (-) True G1789072
XM_021579277.2 mRNA downstream 11448 21936514 ~ 21957704 (-) True stk17b
XM_021579275.2 mRNA downstream 11458 21936514 ~ 21957694 (-) False stk17b
XM_021579276.2 mRNA downstream 11458 21936514 ~ 21957694 (-) False stk17b
XM_036958958.1 mRNA downstream 32738 21922800 ~ 21936414 (-) False ftcdnl1
XM_036958960.1 mRNA upstream 217824 22239178 ~ 22636495 (-) False LOC110502069
XM_036958961.1 mRNA upstream 217824 22239178 ~ 22636505 (-) False LOC110502069
XM_036958962.1 mRNA upstream 219391 22240745 ~ 22636498 (-) False LOC110502069
XM_036958963.1 mRNA upstream 219391 22240745 ~ 22636506 (-) False LOC110502069
XM_021579286.2 mRNA upstream 969340 22990694 ~ 22996267 (-) True LOC110501602
TU2047639 other downstream 148207 21790756 ~ 21820945 (-) True LOC110501594
TU2045833 other downstream 1513169 20390516 ~ 20455983 (-) True G1787166
TU2045476 other downstream 1623138 20345699 ~ 20346014 (-) True G1786832
TU2044972 other downstream 2310052 19656282 ~ 19659100 (-) True znf142
TU2044318 other downstream 2647293 19321188 ~ 19321859 (-) True G1785753
TU2048419 other upstream 396776 22418130 ~ 22419498 (-) True G1789581
TU2049161 other upstream 1143127 23164481 ~ 23169363 (-) True G1790280
TU2049906 other upstream 1411640 23432994 ~ 23460360 (-) True LOC110501997
TU2050435 other upstream 2305375 24326729 ~ 24327127 (-) True G1791405
TU2051421 other upstream 2827237 24848591 ~ 24849752 (-) True G1792342

Expression Profile